Wall clock time and date at job start Tue Mar 31 2020 20:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 N 1.46500 * 109.46757 * 180.02562 * 5 4 2 7 7 C 1.36944 * 119.99630 * 180.02562 * 6 5 4 8 8 H 1.07992 * 120.00236 * 359.97438 * 7 6 5 9 9 C 1.38812 * 119.99426 * 179.97438 * 7 6 5 10 10 N 1.31625 * 119.99844 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00477 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.46802 * 90.00048 * 11 9 7 13 13 H 1.48500 * 109.47425 * 209.99678 * 11 9 7 14 14 H 1.48498 * 109.47060 * 330.00070 * 11 9 7 15 15 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 16 16 C 1.34778 * 119.99771 * 274.99826 * 15 2 1 17 17 O 1.21279 * 120.00041 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99935 * 180.02562 * 16 15 2 19 19 C 1.52997 * 109.54307 * 59.82481 * 18 16 15 20 20 F 1.39897 * 109.47458 * 60.00193 * 19 18 16 21 21 F 1.39908 * 109.47008 * 180.02562 * 19 18 16 22 22 F 1.39902 * 109.46981 * 299.99783 * 19 18 16 23 23 C 1.53177 * 109.54287 * 299.55671 * 18 16 15 24 24 C 1.53091 * 109.16307 * 297.11465 * 23 18 16 25 25 O 1.42910 * 109.41629 * 302.39024 * 24 23 18 26 26 C 1.42899 * 114.09272 * 61.15629 * 25 24 23 27 27 C 1.53090 * 109.41784 * 298.84348 * 26 25 24 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 0.96999 * 120.00502 * 359.97438 * 6 5 4 36 36 H 0.96993 * 120.00182 * 180.02562 * 10 9 7 37 37 H 0.96998 * 120.00630 * 95.00428 * 15 2 1 38 38 H 1.08998 * 109.52526 * 57.01980 * 23 18 16 39 39 H 1.08998 * 109.52386 * 177.20996 * 23 18 16 40 40 H 1.09004 * 109.48209 * 182.40934 * 24 23 18 41 41 H 1.08997 * 109.48493 * 62.37109 * 24 23 18 42 42 H 1.09010 * 109.47714 * 178.86233 * 26 25 24 43 43 H 1.09002 * 109.49348 * 58.83545 * 26 25 24 44 44 H 1.09003 * 109.52285 * 297.70463 * 27 26 25 45 45 H 1.09000 * 109.52262 * 177.52124 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3035 -2.5100 7 6 5.3954 -1.3402 -2.7794 8 1 6.0938 -0.8600 -2.1101 9 6 5.8580 -1.9946 -3.9128 10 7 7.1480 -2.0295 -4.1721 11 14 4.6500 -2.8257 -5.0701 12 1 4.2148 -1.8584 -6.1094 13 1 5.3069 -3.9882 -5.7199 14 1 3.4681 -3.2912 -4.3010 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8581 1.1584 2.4117 18 6 2.6498 -0.7285 3.5875 19 6 4.0508 -1.2830 3.3218 20 9 4.9166 -0.2307 3.0054 21 9 4.5158 -1.9425 4.4647 22 9 4.0008 -2.1835 2.2522 23 6 1.7002 -1.8776 3.9398 24 6 0.3218 -1.3044 4.2791 25 8 0.4461 -0.3752 5.3578 26 6 1.2847 0.7451 5.0689 27 6 2.7018 0.2543 4.7612 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.4260 -1.7351 -3.1110 36 1 7.4713 -2.4864 -4.9642 37 1 2.2490 -1.6318 1.1527 38 1 1.6143 -2.5532 3.0887 39 1 2.0902 -2.4218 4.8000 40 1 -0.3466 -2.1141 4.5721 41 1 -0.0852 -0.7950 3.4057 42 1 1.3101 1.4120 5.9308 43 1 0.8905 1.2816 4.2058 44 1 3.1121 -0.2468 5.6380 45 1 3.3322 1.1035 4.4976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699102690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:27 Heat of formation + Delta-G solvation = -252.231158 kcal Electronic energy + Delta-G solvation = -32305.840020 eV Core-core repulsion = 27521.561842 eV Total energy + Delta-G solvation = -4784.278179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.39284 -48.88155 -48.82855 -42.03780 -39.62637 -37.98858 -36.29897 -35.64879 -33.81333 -32.60562 -31.90646 -29.78343 -28.68125 -25.84993 -25.02753 -24.87718 -23.78646 -23.06060 -21.87745 -21.07194 -19.77126 -19.59507 -19.55426 -19.40558 -17.87384 -17.52051 -17.02828 -16.71686 -16.41791 -16.10650 -15.90707 -15.84435 -15.75256 -15.56228 -15.37498 -15.24720 -15.06731 -14.98534 -14.95759 -14.78201 -14.66616 -14.34706 -13.97905 -13.55420 -13.49693 -13.36972 -13.18680 -12.98761 -12.94586 -12.49237 -12.44249 -12.22146 -12.05162 -12.02258 -11.87754 -11.78480 -11.70368 -11.10082 -11.00451 -10.57181 -10.23609 -9.34214 -8.05129 -5.40531 0.94723 1.36877 1.42581 1.49934 1.64078 1.76470 2.47467 2.49183 2.60669 2.79966 2.87586 3.25932 3.34902 3.36832 3.38376 3.52268 3.78516 3.96952 4.05167 4.14264 4.17721 4.21478 4.33471 4.42637 4.50538 4.56510 4.57488 4.70219 4.71761 4.79287 4.82228 4.89534 4.96089 4.98611 5.12994 5.21439 5.31380 5.42793 5.71466 6.12391 6.18190 6.24978 6.90402 7.05230 7.79022 8.01203 9.16677 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.016311 B = 0.003541 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.257725 B = 7904.953133 C = 8819.337396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.125 4.125 5 C 0.154 3.846 6 N -0.756 5.756 7 C -0.243 4.243 8 H 0.046 0.954 9 C -0.065 4.065 10 N -0.986 5.986 11 Si 0.964 3.036 12 H -0.276 1.276 13 H -0.295 1.295 14 H -0.244 1.244 15 N -0.708 5.708 16 C 0.524 3.476 17 O -0.539 6.539 18 C -0.122 4.122 19 C 0.460 3.540 20 F -0.188 7.188 21 F -0.169 7.169 22 F -0.178 7.178 23 C -0.147 4.147 24 C 0.063 3.937 25 O -0.388 6.388 26 C 0.059 3.941 27 C -0.135 4.135 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.010 0.990 34 H 0.018 0.982 35 H 0.370 0.630 36 H 0.259 0.741 37 H 0.410 0.590 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.064 0.936 44 H 0.104 0.896 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.378 0.113 20.315 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.163 4.163 5 C 0.028 3.972 6 N -0.402 5.402 7 C -0.374 4.374 8 H 0.064 0.936 9 C -0.257 4.257 10 N -0.636 5.636 11 Si 0.790 3.210 12 H -0.202 1.202 13 H -0.222 1.222 14 H -0.168 1.168 15 N -0.361 5.361 16 C 0.308 3.692 17 O -0.416 6.416 18 C -0.127 4.127 19 C 0.405 3.595 20 F -0.169 7.169 21 F -0.150 7.150 22 F -0.160 7.160 23 C -0.185 4.185 24 C -0.014 4.014 25 O -0.307 6.307 26 C -0.017 4.017 27 C -0.172 4.172 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.248 0.752 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.149 0.851 41 H 0.067 0.933 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.433 0.968 20.541 28.293 hybrid contribution 1.129 -0.804 -1.327 1.918 sum -18.304 0.165 19.215 26.538 Atomic orbital electron populations 1.22075 0.92483 1.03411 1.02914 1.20992 0.95572 0.96511 0.82595 0.90844 1.22012 0.93757 1.02478 0.98069 1.20756 0.93959 0.94337 0.88178 1.42637 1.03475 1.66533 1.27549 1.18993 0.84009 1.28408 1.05957 0.93593 1.25631 0.97745 1.01885 1.00400 1.69913 1.14476 1.49763 1.29431 0.85291 0.79007 0.77872 0.78866 1.20234 1.22208 1.16780 1.46308 1.65713 1.14925 1.09174 1.19862 0.78339 0.86871 0.84118 1.90674 1.50661 1.15824 1.84481 1.22338 0.91325 1.01035 0.98024 1.20371 0.88722 0.75946 0.74416 1.93219 1.73139 1.57646 1.92910 1.93198 1.90267 1.81512 1.50012 1.93173 1.96514 1.69057 1.57206 1.22482 0.95620 0.94755 1.05629 1.22695 0.94835 0.93308 0.90516 1.87934 1.68298 1.35097 1.39370 1.22782 0.87326 0.88388 1.03211 1.22184 1.01321 0.98458 0.95278 0.90094 0.90629 0.92779 0.89467 0.88627 0.97151 0.96371 0.79655 0.93217 0.75247 0.87557 0.87101 0.85103 0.93280 0.86470 0.91789 0.87737 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.48 71.98 0.68 -1.76 16 2 C 0.15 3.25 2.57 44.99 0.12 3.37 16 3 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 4 C -0.13 -3.13 4.87 30.60 0.15 -2.98 16 5 C 0.15 5.80 6.15 86.38 0.53 6.33 16 6 N -0.76 -35.17 5.41 -343.44 -1.86 -37.03 16 7 C -0.24 -14.22 10.47 84.03 0.88 -13.34 16 8 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 9 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 10 N -0.99 -64.13 13.97 21.65 0.30 -63.83 16 11 Si 0.96 44.77 27.74 68.60 1.90 46.67 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 14 H -0.24 -9.86 6.52 99.48 0.65 -9.21 16 15 N -0.71 -15.28 4.10 -442.53 -1.82 -17.10 16 16 C 0.52 12.13 4.85 87.66 0.43 12.55 16 17 O -0.54 -15.09 13.50 -3.03 -0.04 -15.13 16 18 C -0.12 -2.34 0.25 -52.81 -0.01 -2.36 16 19 C 0.46 10.68 2.22 71.98 0.16 10.84 16 20 F -0.19 -5.41 16.58 44.97 0.75 -4.67 16 21 F -0.17 -3.59 16.18 44.97 0.73 -2.86 16 22 F -0.18 -4.45 14.65 44.97 0.66 -3.79 16 23 C -0.15 -1.93 4.61 30.68 0.14 -1.79 16 24 C 0.06 0.82 6.62 72.01 0.48 1.29 16 25 O -0.39 -6.67 10.77 -148.98 -1.60 -8.28 16 26 C 0.06 1.02 6.55 72.01 0.47 1.49 16 27 C -0.13 -2.40 4.31 30.68 0.13 -2.26 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.02 0.72 7.75 -2.39 -0.02 0.70 16 35 H 0.37 15.77 5.53 -92.71 -0.51 15.26 16 36 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 37 H 0.41 8.06 6.18 -92.71 -0.57 7.49 16 38 H 0.11 1.10 7.29 -2.39 -0.02 1.08 16 39 H 0.11 1.25 7.73 -2.39 -0.02 1.23 16 40 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.05 0.71 7.38 -2.39 -0.02 0.69 16 42 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.06 1.34 5.80 -2.39 -0.01 1.33 16 44 H 0.10 1.56 7.73 -2.39 -0.02 1.54 16 45 H 0.08 1.71 7.79 -2.39 -0.02 1.69 16 Total: -1.00 -74.52 364.35 3.53 -70.99 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.11 Total: 27.04 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 4.62 Total: 7.97 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -3.37 Total: -117.95 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -1.64 Total: -23.40 kcal Atomic # 9 Polarization: -13.45 SS G_CDS: 2.13 Total: -11.32 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -74.52 3.53 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699102690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.239 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds