Wall clock time and date at job start Tue Mar 31 2020 21:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47250 * 2 1 4 4 C 1.53002 * 109.46958 * 119.99826 * 2 1 3 5 5 N 1.46498 * 109.47057 * 175.00358 * 4 2 1 6 6 C 1.46504 * 120.00012 * 269.99493 * 5 4 2 7 7 C 1.36938 * 120.00248 * 89.99875 * 5 4 2 8 8 H 1.08000 * 120.00283 * 23.66895 * 7 5 4 9 9 C 1.38813 * 120.00370 * 203.66910 * 7 5 4 10 10 N 1.31623 * 119.99545 * 11.23228 * 9 7 5 11 11 Si 1.86794 * 120.00421 * 191.23422 * 9 7 5 12 12 H 1.48502 * 109.47036 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47148 * 119.99786 * 11 9 7 14 14 H 1.48502 * 109.47226 * 240.00020 * 11 9 7 15 15 N 1.46498 * 109.47620 * 239.99536 * 2 1 3 16 16 C 1.34780 * 119.99411 * 84.99829 * 15 2 1 17 17 O 1.21548 * 120.00503 * 0.02562 * 16 15 2 18 18 C 1.47848 * 119.99714 * 179.97438 * 16 15 2 19 19 C 1.39574 * 120.14612 * 359.72965 * 18 16 15 20 20 C 1.37954 * 119.85372 * 179.73952 * 19 18 16 21 21 C 1.38354 * 120.14670 * 0.53677 * 20 19 18 22 22 P 1.81403 * 119.85746 * 179.71925 * 21 20 19 23 23 C 1.82305 * 109.46758 * 330.01795 * 22 21 20 24 24 C 1.82297 * 109.47114 * 90.01482 * 22 21 20 25 25 O 1.47991 * 109.47263 * 210.02049 * 22 21 20 26 26 C 1.38353 * 120.29136 * 359.73622 * 21 20 19 27 27 C 1.37962 * 120.14824 * 359.97438 * 26 21 20 28 28 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47090 * 60.00434 * 1 2 3 30 30 H 1.09003 * 109.47540 * 300.00231 * 1 2 3 31 31 H 1.09003 * 109.47137 * 294.99951 * 4 2 1 32 32 H 1.09001 * 109.47424 * 55.00025 * 4 2 1 33 33 H 1.09001 * 109.46365 * 94.62328 * 6 5 4 34 34 H 1.08997 * 109.47247 * 214.62150 * 6 5 4 35 35 H 1.08999 * 109.46972 * 334.62778 * 6 5 4 36 36 H 0.97006 * 119.99628 * 179.97438 * 10 9 7 37 37 H 0.96997 * 120.00629 * 265.00482 * 15 2 1 38 38 H 1.08006 * 120.06977 * 359.97438 * 19 18 16 39 39 H 1.08005 * 119.92508 * 180.27185 * 20 19 18 40 40 H 1.09003 * 109.46955 * 60.00252 * 23 22 21 41 41 H 1.08999 * 109.46910 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47053 * 300.00128 * 23 22 21 43 43 H 1.09005 * 109.47165 * 60.00465 * 24 22 21 44 44 H 1.08999 * 109.47005 * 180.02562 * 24 22 21 45 45 H 1.08997 * 109.47581 * 299.99973 * 24 22 21 46 46 H 1.08005 * 119.93038 * 180.02562 * 26 21 20 47 47 H 1.07999 * 120.07623 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2797 0.1649 1.7241 8 1 3.8836 0.8066 2.4972 9 6 5.5795 0.3451 1.2712 10 7 5.9914 -0.2792 0.1881 11 14 6.7439 1.4733 2.1988 12 1 6.0428 2.0503 3.3739 13 1 7.9235 0.6972 2.6588 14 1 7.1913 2.5688 1.3016 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8584 1.1611 -2.4116 18 6 2.6406 -0.7151 -3.5640 19 6 2.9793 -2.0678 -3.5032 20 6 3.4341 -2.7133 -4.6344 21 6 3.5651 -2.0202 -5.8246 22 15 4.1711 -2.8751 -7.3054 23 6 5.3034 -4.2161 -6.8123 24 6 2.7602 -3.5772 -8.2218 25 8 4.8916 -1.9139 -8.1698 26 6 3.2365 -0.6779 -5.8904 27 6 2.7749 -0.0218 -4.7680 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.7515 -0.1582 2.1370 32 1 1.6053 -1.7198 1.2953 33 1 4.3546 -1.7636 -0.4795 34 1 5.0463 -2.2396 1.0899 35 1 3.4420 -2.8396 0.6056 36 1 6.8996 -0.1530 -0.1286 37 1 2.2491 -1.6318 -1.1525 38 1 2.8821 -2.6087 -2.5735 39 1 3.6924 -3.7611 -4.5897 40 1 4.7726 -4.9240 -6.1757 41 1 5.6678 -4.7294 -7.7021 42 1 6.1469 -3.7962 -6.2643 43 1 2.0832 -2.7754 -8.5167 44 1 3.1244 -4.0913 -9.1113 45 1 2.2296 -4.2852 -7.5852 46 1 3.3406 -0.1427 -6.8227 47 1 2.5190 1.0261 -4.8205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699473935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:17 Heat of formation + Delta-G solvation = -46.347471 kcal Electronic energy + Delta-G solvation = -27318.992750 eV Core-core repulsion = 23581.493947 eV Total energy + Delta-G solvation = -3737.498804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -39.95901 -38.18466 -36.36957 -34.12560 -33.16338 -31.95628 -31.20075 -30.84680 -29.79557 -29.07227 -27.95656 -26.26702 -25.67474 -24.02147 -22.75393 -21.77493 -20.49793 -19.94678 -18.00625 -16.87450 -16.80458 -15.89022 -15.09756 -14.99655 -14.90318 -14.74740 -14.47063 -14.06640 -13.84616 -13.76543 -13.71157 -13.59809 -13.37102 -13.25179 -13.11770 -12.96527 -12.78049 -12.38508 -12.21873 -12.13109 -11.98116 -11.62866 -11.50603 -11.26421 -11.17250 -10.89815 -10.81635 -10.61378 -10.28009 -9.99909 -9.91573 -9.88724 -9.85404 -9.50731 -9.24729 -9.09831 -8.66290 -8.45045 -6.80778 -5.77671 -3.24331 0.57873 1.26324 1.34625 2.96842 3.36336 3.43909 3.45705 3.56916 3.93271 4.29717 4.47186 4.47928 4.52808 4.63847 4.69620 4.75862 4.93132 5.08496 5.21449 5.22983 5.29395 5.35560 5.43331 5.59217 5.59861 5.64747 5.71456 5.77068 5.82550 5.91880 6.00177 6.02529 6.10672 6.16409 6.30337 6.40537 6.45905 6.53824 6.76427 6.80586 7.06583 7.22387 7.35413 7.56408 7.76537 7.97963 8.34048 8.65492 9.17725 9.79745 10.27632 11.27725 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003201 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.987947 B = 8745.025003 C = 9793.021407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.088 0.912 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.160 3.840 7 C -0.258 4.258 8 H 0.069 0.931 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.689 5.689 16 C 0.554 3.446 17 O -0.542 6.542 18 C -0.081 4.081 19 C -0.098 4.098 20 C -0.083 4.083 21 C -0.717 4.717 22 P 2.559 2.441 23 C -0.811 4.811 24 C -0.808 4.808 25 O -1.003 7.003 26 C -0.049 4.049 27 C -0.081 4.081 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.044 0.956 35 H -0.007 1.007 36 H 0.251 0.749 37 H 0.394 0.606 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.147 0.853 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -10.353 -13.175 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.388 4.388 8 H 0.087 0.913 9 C -0.192 4.192 10 N -0.549 5.549 11 Si 0.734 3.266 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.216 1.216 15 N -0.339 5.339 16 C 0.340 3.660 17 O -0.421 6.421 18 C -0.084 4.084 19 C -0.117 4.117 20 C -0.101 4.101 21 C -0.706 4.706 22 P 2.629 2.371 23 C -0.856 4.856 24 C -0.853 4.853 25 O -1.107 7.107 26 C -0.067 4.067 27 C -0.099 4.099 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.011 0.989 36 H 0.062 0.938 37 H 0.229 0.771 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.108 0.892 46 H 0.165 0.835 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.032 -10.134 -12.671 18.570 hybrid contribution 0.446 -0.605 1.238 1.448 sum -8.586 -10.738 -11.434 17.882 Atomic orbital electron populations 1.22152 0.96711 1.01103 1.01838 1.21939 0.91753 0.99320 0.86159 0.89397 1.21212 0.85860 0.97186 0.94348 1.43885 0.99018 1.20858 1.68155 1.20867 0.94596 0.85047 0.97938 1.19206 0.94595 1.10644 1.14341 0.91348 1.25031 0.98908 0.98980 0.96306 1.70035 1.17237 1.45550 1.22032 0.86194 0.80970 0.80266 0.79153 1.20332 1.21666 1.21640 1.45733 1.65298 1.13657 1.09178 1.18126 0.78025 0.86537 0.83297 1.90727 1.50877 1.15265 1.85209 1.20385 0.99175 0.94150 0.94714 1.21412 0.97525 0.93984 0.98762 1.20859 0.97451 0.99207 0.92536 1.33114 1.13347 1.05899 1.18234 0.89712 0.48741 0.50275 0.48417 1.31856 1.19742 1.22827 1.11163 1.31848 1.25080 1.13001 1.15408 1.95054 1.76680 1.67664 1.71252 1.20956 0.93780 0.92663 0.99257 1.21494 0.96255 1.00821 0.91367 0.93222 0.92930 0.91887 0.92085 0.94071 0.95067 0.93746 0.98876 0.93830 0.77070 0.85234 0.85549 0.89157 0.87404 0.86758 0.87112 0.87493 0.89182 0.83486 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.15 0.35 -2.01 16 2 C 0.12 2.15 2.88 -67.93 -0.20 1.95 16 3 H 0.09 1.98 7.58 -51.93 -0.39 1.59 16 4 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 5 N -0.60 -14.12 2.78 -181.11 -0.50 -14.62 16 6 C 0.16 3.63 7.60 59.85 0.46 4.09 16 7 C -0.26 -6.94 9.66 -15.06 -0.15 -7.09 16 8 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 9 C 0.01 0.18 5.13 -17.43 -0.09 0.09 16 10 N -0.90 -25.88 10.66 55.49 0.59 -25.29 16 11 Si 0.90 22.04 29.57 -169.99 -5.03 17.01 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 N -0.69 -12.58 4.36 -54.75 -0.24 -12.82 16 16 C 0.55 10.86 7.74 -12.33 -0.10 10.76 16 17 O -0.54 -12.26 16.01 5.32 0.09 -12.17 16 18 C -0.08 -1.35 5.87 -104.97 -0.62 -1.97 16 19 C -0.10 -1.37 9.54 -39.19 -0.37 -1.74 16 20 C -0.08 -0.91 9.56 -39.64 -0.38 -1.29 16 21 C -0.72 -7.56 6.19 -39.50 -0.24 -7.81 16 22 P 2.56 19.40 5.23 -42.89 -0.22 19.17 16 23 C -0.81 -5.73 10.54 101.05 1.06 -4.66 16 24 C -0.81 -5.08 11.06 101.05 1.12 -3.97 16 25 O -1.00 -11.84 18.40 21.61 0.40 -11.44 16 26 C -0.05 -0.60 9.67 -39.64 -0.38 -0.98 16 27 C -0.08 -1.22 9.60 -39.18 -0.38 -1.60 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 33 H 0.03 0.75 6.90 -51.93 -0.36 0.39 16 34 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 35 H -0.01 -0.14 7.84 -51.93 -0.41 -0.54 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.39 6.50 5.21 -40.82 -0.21 6.29 16 38 H 0.13 1.64 6.41 -52.48 -0.34 1.30 16 39 H 0.13 0.90 7.26 -52.48 -0.38 0.52 16 40 H 0.09 0.47 7.64 -51.93 -0.40 0.08 16 41 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.15 1.43 8.03 -52.48 -0.42 1.01 16 47 H 0.14 2.12 7.65 -52.49 -0.40 1.72 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -36.63 397.19 -6.31 -42.93 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.44 Total: 4.78 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.15 Total: -52.73 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.48 Total: -23.62 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Atomic # 15 Polarization: 19.40 SS G_CDS: -0.22 Total: 19.17 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.63 -6.31 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699473935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.415 kcal (2) G-P(sol) polarization free energy of solvation -36.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds