Wall clock time and date at job start Tue Mar 31 2020 21:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47250 * 2 1 4 4 C 1.53002 * 109.46958 * 119.99826 * 2 1 3 5 5 N 1.46498 * 109.47057 * 175.00358 * 4 2 1 6 6 C 1.46504 * 120.00012 * 269.99493 * 5 4 2 7 7 C 1.36938 * 120.00248 * 89.99875 * 5 4 2 8 8 H 1.08000 * 120.00283 * 23.66895 * 7 5 4 9 9 C 1.38813 * 120.00370 * 203.66910 * 7 5 4 10 10 N 1.31623 * 119.99545 * 11.23228 * 9 7 5 11 11 Si 1.86794 * 120.00421 * 191.23422 * 9 7 5 12 12 H 1.48502 * 109.47036 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47148 * 119.99786 * 11 9 7 14 14 H 1.48502 * 109.47226 * 240.00020 * 11 9 7 15 15 N 1.46498 * 109.47620 * 239.99536 * 2 1 3 16 16 C 1.34780 * 119.99411 * 84.99829 * 15 2 1 17 17 O 1.21548 * 120.00503 * 0.02562 * 16 15 2 18 18 C 1.47848 * 119.99714 * 179.97438 * 16 15 2 19 19 C 1.39574 * 120.14612 * 359.72965 * 18 16 15 20 20 C 1.37954 * 119.85372 * 179.73952 * 19 18 16 21 21 C 1.38354 * 120.14670 * 0.53677 * 20 19 18 22 22 P 1.81403 * 119.85746 * 179.71925 * 21 20 19 23 23 C 1.82305 * 109.46758 * 330.01795 * 22 21 20 24 24 C 1.82297 * 109.47114 * 90.01482 * 22 21 20 25 25 O 1.47991 * 109.47263 * 210.02049 * 22 21 20 26 26 C 1.38353 * 120.29136 * 359.73622 * 21 20 19 27 27 C 1.37962 * 120.14824 * 359.97438 * 26 21 20 28 28 H 1.09001 * 109.47250 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47090 * 60.00434 * 1 2 3 30 30 H 1.09003 * 109.47540 * 300.00231 * 1 2 3 31 31 H 1.09003 * 109.47137 * 294.99951 * 4 2 1 32 32 H 1.09001 * 109.47424 * 55.00025 * 4 2 1 33 33 H 1.09001 * 109.46365 * 94.62328 * 6 5 4 34 34 H 1.08997 * 109.47247 * 214.62150 * 6 5 4 35 35 H 1.08999 * 109.46972 * 334.62778 * 6 5 4 36 36 H 0.97006 * 119.99628 * 179.97438 * 10 9 7 37 37 H 0.96997 * 120.00629 * 265.00482 * 15 2 1 38 38 H 1.08006 * 120.06977 * 359.97438 * 19 18 16 39 39 H 1.08005 * 119.92508 * 180.27185 * 20 19 18 40 40 H 1.09003 * 109.46955 * 60.00252 * 23 22 21 41 41 H 1.08999 * 109.46910 * 180.02562 * 23 22 21 42 42 H 1.09000 * 109.47053 * 300.00128 * 23 22 21 43 43 H 1.09005 * 109.47165 * 60.00465 * 24 22 21 44 44 H 1.08999 * 109.47005 * 180.02562 * 24 22 21 45 45 H 1.08997 * 109.47581 * 299.99973 * 24 22 21 46 46 H 1.08005 * 119.93038 * 180.02562 * 26 21 20 47 47 H 1.07999 * 120.07623 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4999 -0.8263 1.1907 6 6 4.1258 -1.9919 0.5614 7 6 4.2797 0.1649 1.7241 8 1 3.8836 0.8066 2.4972 9 6 5.5795 0.3451 1.2712 10 7 5.9914 -0.2792 0.1881 11 14 6.7439 1.4733 2.1988 12 1 6.0428 2.0503 3.3739 13 1 7.9235 0.6972 2.6588 14 1 7.1913 2.5688 1.3016 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8584 1.1611 -2.4116 18 6 2.6406 -0.7151 -3.5640 19 6 2.9793 -2.0678 -3.5032 20 6 3.4341 -2.7133 -4.6344 21 6 3.5651 -2.0202 -5.8246 22 15 4.1711 -2.8751 -7.3054 23 6 5.3034 -4.2161 -6.8123 24 6 2.7602 -3.5772 -8.2218 25 8 4.8916 -1.9139 -8.1698 26 6 3.2365 -0.6779 -5.8904 27 6 2.7749 -0.0218 -4.7680 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.7515 -0.1582 2.1370 32 1 1.6053 -1.7198 1.2953 33 1 4.3546 -1.7636 -0.4795 34 1 5.0463 -2.2396 1.0899 35 1 3.4420 -2.8396 0.6056 36 1 6.8996 -0.1530 -0.1286 37 1 2.2491 -1.6318 -1.1525 38 1 2.8821 -2.6087 -2.5735 39 1 3.6924 -3.7611 -4.5897 40 1 4.7726 -4.9240 -6.1757 41 1 5.6678 -4.7294 -7.7021 42 1 6.1469 -3.7962 -6.2643 43 1 2.0832 -2.7754 -8.5167 44 1 3.1244 -4.0913 -9.1113 45 1 2.2296 -4.2852 -7.5852 46 1 3.3406 -0.1427 -6.8227 47 1 2.5190 1.0261 -4.8205 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699473935.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:16 Heat of formation + Delta-G solvation = -71.190491 kcal Electronic energy + Delta-G solvation = -27320.070025 eV Core-core repulsion = 23581.493947 eV Total energy + Delta-G solvation = -3738.576078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.30170 -39.40023 -38.04377 -35.86135 -33.97972 -33.42316 -32.55080 -32.18934 -31.06149 -29.64911 -28.44207 -28.02702 -27.45441 -25.27171 -23.80761 -23.42040 -21.97684 -21.41162 -19.22163 -18.79651 -17.82759 -17.33154 -16.82864 -16.33289 -15.90283 -15.88211 -15.70458 -15.47613 -15.22383 -14.96947 -14.63522 -14.54134 -14.44963 -14.25926 -14.02965 -13.86912 -13.77938 -13.70014 -13.43348 -13.13563 -12.98836 -12.88979 -12.80418 -12.73426 -12.58271 -12.53021 -12.36296 -12.22108 -12.06740 -11.85896 -11.75050 -11.07470 -10.70439 -10.67568 -10.59488 -10.37335 -10.11382 -9.97554 -8.75868 -7.85737 -5.32180 -0.50975 0.24645 0.74804 1.40222 1.43313 1.51496 1.69234 2.20041 2.48097 2.69036 3.29030 3.59974 3.61652 3.69767 3.80192 3.84547 3.98113 4.12898 4.14675 4.22148 4.25309 4.28924 4.35933 4.46805 4.55462 4.61873 4.69578 4.71243 4.77582 4.83837 4.87562 4.94966 4.99573 5.06086 5.11957 5.17347 5.23556 5.25590 5.31579 5.32858 5.59559 5.62647 5.73869 5.77322 6.31424 6.53622 6.72526 7.14942 7.19829 7.86270 8.26514 9.16596 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.003201 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.987947 B = 8745.025003 C = 9793.021407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.119 3.881 3 H 0.037 0.963 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.172 3.828 7 C -0.261 4.261 8 H 0.067 0.933 9 C -0.048 4.048 10 N -0.929 5.929 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.301 1.301 15 N -0.684 5.684 16 C 0.544 3.456 17 O -0.588 6.588 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.079 4.079 21 C -0.705 4.705 22 P 2.622 2.378 23 C -0.832 4.832 24 C -0.826 4.826 25 O -1.051 7.051 26 C -0.055 4.055 27 C -0.102 4.102 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.012 0.988 34 H 0.012 0.988 35 H 0.038 0.962 36 H 0.244 0.756 37 H 0.404 0.596 38 H 0.141 0.859 39 H 0.174 0.826 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.169 0.831 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 -13.279 -13.499 21.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.056 0.944 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.027 3.973 7 C -0.391 4.391 8 H 0.085 0.915 9 C -0.243 4.243 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.215 1.215 14 H -0.229 1.229 15 N -0.333 5.333 16 C 0.332 3.668 17 O -0.471 6.471 18 C -0.118 4.118 19 C -0.126 4.126 20 C -0.096 4.096 21 C -0.694 4.694 22 P 2.688 2.312 23 C -0.876 4.876 24 C -0.870 4.870 25 O -1.151 7.151 26 C -0.072 4.072 27 C -0.121 4.121 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.030 0.970 34 H 0.031 0.969 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.241 0.759 38 H 0.158 0.842 39 H 0.192 0.808 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.186 0.814 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.945 -13.077 -12.987 20.942 hybrid contribution 0.664 0.237 1.326 1.502 sum -9.281 -12.840 -11.660 19.671 Atomic orbital electron populations 1.22021 0.93397 1.02976 1.02026 1.21778 0.94252 0.96545 0.86209 0.94433 1.21395 0.83295 0.99348 0.94447 1.44096 1.00848 1.20488 1.67981 1.20666 0.94387 0.86115 0.96122 1.19492 0.95042 1.10676 1.13906 0.91535 1.25678 1.00484 1.00824 0.97349 1.70185 1.16903 1.47102 1.23325 0.85335 0.79329 0.78396 0.78189 1.19163 1.21507 1.22873 1.45708 1.64856 1.13994 1.08751 1.18719 0.77319 0.86247 0.84486 1.90681 1.53081 1.17245 1.86072 1.20316 1.01947 0.95668 0.93844 1.21642 0.97633 0.92902 1.00438 1.21435 0.95473 1.01376 0.91310 1.33664 1.11140 1.05238 1.19388 0.87979 0.47798 0.49097 0.46314 1.31986 1.19761 1.23516 1.12356 1.31929 1.25032 1.13772 1.16280 1.95031 1.78054 1.69607 1.72426 1.21266 0.93158 0.93747 0.99078 1.21557 0.97691 1.00620 0.92249 0.90384 0.94351 0.90132 0.91507 0.90343 0.96966 0.96929 0.94402 0.94692 0.75941 0.84163 0.80839 0.86724 0.86303 0.87629 0.87137 0.86441 0.87237 0.81404 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.48 71.98 0.68 -3.43 16 2 C 0.12 4.43 2.88 44.99 0.13 4.56 16 3 H 0.04 1.77 7.58 -2.39 -0.02 1.75 16 4 C 0.14 5.15 5.33 86.38 0.46 5.61 16 5 N -0.61 -28.58 2.78 -726.92 -2.02 -30.60 16 6 C 0.17 7.64 7.60 127.77 0.97 8.61 16 7 C -0.26 -14.09 9.66 84.03 0.81 -13.28 16 8 H 0.07 3.55 7.85 -2.91 -0.02 3.53 16 9 C -0.05 -2.68 5.13 84.86 0.44 -2.25 16 10 N -0.93 -54.42 10.66 21.65 0.23 -54.19 16 11 Si 0.96 46.12 29.57 68.60 2.03 48.15 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 14 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 15 N -0.68 -25.11 4.36 -445.42 -1.94 -27.05 16 16 C 0.54 22.32 7.74 86.79 0.67 22.99 16 17 O -0.59 -28.51 16.01 -3.87 -0.06 -28.57 16 18 C -0.11 -3.93 5.87 -20.09 -0.12 -4.05 16 19 C -0.11 -2.88 9.54 22.52 0.21 -2.66 16 20 C -0.08 -1.51 9.56 22.23 0.21 -1.30 16 21 C -0.70 -13.43 6.19 22.32 0.14 -13.29 16 22 P 2.62 33.00 5.23 -40.88 -0.21 32.78 16 23 C -0.83 -9.00 10.54 113.37 1.19 -7.80 16 24 C -0.83 -7.78 11.06 113.37 1.25 -6.53 16 25 O -1.05 -23.29 18.40 -41.19 -0.76 -24.05 16 26 C -0.06 -1.33 9.67 22.23 0.22 -1.12 16 27 C -0.10 -3.24 9.60 22.53 0.22 -3.02 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 32 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 33 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 34 H 0.01 0.61 7.30 -2.39 -0.02 0.59 16 35 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 36 H 0.24 14.14 8.31 -92.70 -0.77 13.37 16 37 H 0.40 12.92 5.21 -92.71 -0.48 12.44 16 38 H 0.14 3.30 6.41 -2.91 -0.02 3.29 16 39 H 0.17 1.62 7.26 -2.91 -0.02 1.59 16 40 H 0.11 0.67 7.64 -2.39 -0.02 0.65 16 41 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.17 3.20 8.03 -2.91 -0.02 3.17 16 47 H 0.13 4.21 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -83.40 397.19 5.23 -78.18 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.48 Total: 22.30 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 7.49 Total: -16.95 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.73 Total: -111.84 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.82 Total: -52.62 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 15 Polarization: 33.00 SS G_CDS: -0.21 Total: 32.78 kcal Total: -83.40 5.23 -78.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699473935.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.985 kcal (2) G-P(sol) polarization free energy of solvation -83.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds