Wall clock time and date at job start Tue Mar 31 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 O 1.21283 * 120.00218 * 240.00192 * 4 2 1 6 6 N 1.34780 * 119.99465 * 60.00368 * 4 2 1 7 7 C 1.46505 * 119.99662 * 179.97438 * 6 4 2 8 8 H 1.08996 * 112.84716 * 336.19374 * 7 6 4 9 9 C 1.53781 * 113.61289 * 107.50498 * 7 6 4 10 10 C 1.53776 * 87.08229 * 89.11338 * 9 7 6 11 11 H 1.09002 * 113.69226 * 270.87152 * 10 9 7 12 12 C 1.53001 * 113.61315 * 139.97687 * 10 9 7 13 13 N 1.46496 * 109.46827 * 87.50412 * 12 10 9 14 14 C 1.36944 * 119.99984 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99867 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99998 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99985 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47458 * 89.99664 * 18 16 14 20 20 H 1.48506 * 109.46949 * 210.00233 * 18 16 14 21 21 H 1.48499 * 109.46976 * 329.99431 * 18 16 14 22 22 C 1.53779 * 113.61048 * 205.00192 * 7 6 4 23 23 C 1.50706 * 109.46859 * 120.00432 * 2 1 3 24 24 C 1.38415 * 120.02540 * 59.72139 * 23 2 1 25 25 F 1.35091 * 120.01530 * 0.02562 * 24 23 2 26 26 C 1.38476 * 119.97078 * 179.79558 * 24 23 2 27 27 C 1.38212 * 120.02795 * 0.47850 * 26 24 23 28 28 C 1.38208 * 120.04582 * 359.75179 * 27 26 24 29 29 C 1.38417 * 120.02024 * 239.99524 * 23 2 1 30 30 F 1.35105 * 120.01737 * 0.02562 * 29 23 2 31 31 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 32 32 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 33 33 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00110 * 0.02562 * 6 4 2 35 35 H 1.09005 * 113.61159 * 203.66470 * 9 7 6 36 36 H 1.08997 * 113.61494 * 334.56109 * 9 7 6 37 37 H 1.09000 * 109.47271 * 207.49884 * 12 10 9 38 38 H 1.08999 * 109.47342 * 327.50484 * 12 10 9 39 39 H 0.96999 * 120.00012 * 0.02562 * 13 12 10 40 40 H 0.97003 * 119.99938 * 179.97438 * 17 16 14 41 41 H 1.08993 * 113.61768 * 25.43416 * 22 7 6 42 42 H 1.09004 * 113.61102 * 156.25626 * 22 7 6 43 43 H 1.08007 * 119.98823 * 180.23049 * 26 24 23 44 44 H 1.07991 * 119.97446 * 179.73100 * 27 26 24 45 45 H 1.08001 * 119.98453 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 1 3.1010 -1.5180 -3.4657 9 6 1.1042 -1.7242 -4.3987 10 6 0.8302 -0.4344 -5.1899 11 1 0.0933 0.2183 -4.7219 12 6 0.5535 -0.6739 -6.6755 13 7 -0.8757 -0.9299 -6.8709 14 6 -1.3622 -1.1726 -8.1277 15 1 -0.6925 -1.1749 -8.9749 16 6 -2.7165 -1.4147 -8.3129 17 7 -3.1842 -1.6475 -9.5210 18 14 -3.8753 -1.4086 -6.8478 19 1 -4.4027 -0.0362 -6.6395 20 1 -5.0038 -2.3389 -7.1054 21 1 -3.1406 -1.8461 -5.6337 22 6 2.2849 -0.0353 -4.8908 23 6 2.0323 -0.7105 1.2305 24 6 1.6934 -2.0340 1.4528 25 9 0.9126 -2.6897 0.5667 26 6 2.1590 -2.6871 2.5817 27 6 2.9537 -2.0150 3.4912 28 6 3.2887 -0.6921 3.2725 29 6 2.8281 -0.0384 2.1419 30 9 3.1547 1.2552 1.9292 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1494 0.5390 -2.5435 35 1 1.4931 -2.5379 -5.0110 36 1 0.2738 -2.0313 -3.7629 37 1 0.8460 0.2074 -7.2463 38 1 1.1270 -1.5353 -7.0177 39 1 -1.4774 -0.9267 -6.1101 40 1 -4.1305 -1.8170 -9.6503 41 1 2.4077 1.0212 -4.6525 42 1 2.9976 -0.3864 -5.6371 43 1 1.8979 -3.7209 2.7536 44 1 3.3127 -2.5238 4.3734 45 1 3.9093 -0.1677 3.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700636155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:20 Heat of formation + Delta-G solvation = -68.347801 kcal Electronic energy + Delta-G solvation = -29094.880944 eV Core-core repulsion = 24749.345770 eV Total energy + Delta-G solvation = -4345.535173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.43504 -49.23829 -40.57366 -39.32665 -38.30597 -34.74438 -34.69209 -33.09968 -31.16108 -30.68228 -29.89167 -27.25868 -25.59864 -25.26924 -23.55344 -23.24875 -22.55532 -21.35804 -20.51629 -19.26279 -18.50080 -18.09942 -17.52339 -17.03894 -16.53844 -16.18633 -15.92197 -15.81256 -15.58796 -15.22282 -14.98224 -14.75952 -14.49497 -14.39382 -14.07212 -13.84693 -13.48129 -13.14285 -13.01196 -12.74357 -12.57314 -12.52546 -12.48263 -12.33215 -12.28069 -11.95032 -11.74633 -11.41460 -11.32450 -10.89703 -10.64072 -10.24641 -10.17343 -10.00409 -9.89788 -9.57021 -9.29462 -9.11066 -9.09687 -8.86148 -7.20347 -5.75484 -3.10383 0.53516 0.60814 2.42843 2.80270 3.09706 3.37785 3.40445 3.45578 3.50921 3.86662 4.01892 4.18242 4.36060 4.52114 4.60040 4.61436 4.65501 4.70179 4.73854 4.82043 5.01187 5.01787 5.20032 5.32097 5.36281 5.48178 5.55067 5.55240 5.59789 5.65016 5.69291 5.73694 5.77812 5.83281 5.85792 5.95836 6.11837 6.13034 6.26674 6.35365 6.54815 6.69512 6.82939 7.32425 8.01452 8.03778 8.43915 9.23469 9.95998 10.16244 11.43115 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.002403 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.073450 B =11648.403353 C =12202.202865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.072 4.072 3 H 0.114 0.886 4 C 0.523 3.477 5 O -0.530 6.530 6 N -0.706 5.706 7 C 0.116 3.884 8 H 0.100 0.900 9 C -0.140 4.140 10 C -0.119 4.119 11 H 0.086 0.914 12 C 0.167 3.833 13 N -0.755 5.755 14 C -0.243 4.243 15 H 0.089 0.911 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.136 4.136 23 C -0.141 4.141 24 C 0.164 3.836 25 F -0.120 7.120 26 C -0.168 4.168 27 C -0.061 4.061 28 C -0.169 4.169 29 C 0.135 3.865 30 F -0.130 7.130 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.401 0.599 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.909 4.192 29.924 33.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 H 0.132 0.868 4 C 0.308 3.692 5 O -0.405 6.405 6 N -0.357 5.357 7 C 0.011 3.989 8 H 0.118 0.882 9 C -0.179 4.179 10 C -0.137 4.137 11 H 0.104 0.896 12 C 0.040 3.960 13 N -0.401 5.401 14 C -0.373 4.373 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.583 5.583 18 Si 0.716 3.284 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.175 4.175 23 C -0.143 4.143 24 C 0.144 3.856 25 F -0.098 7.098 26 C -0.187 4.187 27 C -0.079 4.079 28 C -0.188 4.188 29 C 0.115 3.885 30 F -0.109 7.109 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.236 0.764 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.395 3.461 29.691 33.177 hybrid contribution -1.339 0.501 0.611 1.555 sum 13.056 3.963 30.302 33.232 Atomic orbital electron populations 1.21891 0.91117 1.04203 1.03469 1.20167 0.98492 1.00687 0.89948 0.86841 1.20243 0.80115 0.84518 0.84315 1.90716 1.37532 1.25738 1.86545 1.45609 1.53377 1.31765 1.04948 1.21949 0.98272 0.95064 0.83607 0.88180 1.23441 0.98527 0.97514 0.98411 1.22814 0.95907 0.97269 0.97734 0.89596 1.20618 0.86227 0.97891 0.91308 1.42702 1.03461 1.87474 1.06444 1.19081 0.92861 1.40328 0.84996 0.89273 1.24683 0.96680 1.01884 0.96095 1.69704 1.13651 1.55254 1.19739 0.86527 0.81249 0.77557 0.83098 1.21153 1.21757 1.20332 1.23298 0.98003 0.99542 0.96609 1.19337 1.02891 0.94269 0.97791 1.17099 0.91688 0.89065 0.87735 1.91537 1.71085 1.80312 1.66859 1.21238 1.01340 1.01727 0.94363 1.20849 0.95230 0.93175 0.98614 1.21143 1.03849 0.96060 0.97698 1.17142 0.97150 0.79046 0.95142 1.91512 1.90753 1.33865 1.94742 0.90995 0.90921 0.90885 0.76419 0.88864 0.91458 0.95526 0.95382 0.80745 0.93100 0.91145 0.88478 0.83922 0.83883 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.87 37.16 0.33 -0.90 16 2 C -0.07 -0.69 2.79 -92.92 -0.26 -0.95 16 3 H 0.11 0.91 7.13 -51.93 -0.37 0.54 16 4 C 0.52 6.43 6.60 -10.98 -0.07 6.35 16 5 O -0.53 -8.39 14.18 5.55 0.08 -8.31 16 6 N -0.71 -7.68 5.16 -53.01 -0.27 -7.95 16 7 C 0.12 1.41 4.32 -67.12 -0.29 1.12 16 8 H 0.10 1.32 7.46 -51.93 -0.39 0.93 16 9 C -0.14 -1.99 7.43 -25.92 -0.19 -2.18 16 10 C -0.12 -1.70 3.63 -89.81 -0.33 -2.03 16 11 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 12 C 0.17 3.16 6.10 -4.04 -0.02 3.14 16 13 N -0.76 -18.07 5.41 -59.91 -0.32 -18.39 16 14 C -0.24 -6.97 10.47 -15.06 -0.16 -7.13 16 15 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 16 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 17 N -0.94 -29.73 13.97 55.49 0.78 -28.96 16 18 Si 0.89 22.34 27.74 -169.99 -4.71 17.62 16 19 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 21 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 22 C -0.14 -1.54 7.39 -25.92 -0.19 -1.74 16 23 C -0.14 -1.44 4.40 -104.49 -0.46 -1.90 16 24 C 0.16 1.75 6.14 -39.43 -0.24 1.51 16 25 F -0.12 -1.52 13.81 2.25 0.03 -1.49 16 26 C -0.17 -1.34 10.02 -39.50 -0.40 -1.74 16 27 C -0.06 -0.37 10.04 -39.60 -0.40 -0.77 16 28 C -0.17 -1.16 10.02 -39.50 -0.40 -1.55 16 29 C 0.13 1.22 7.25 -39.43 -0.29 0.93 16 30 F -0.13 -1.20 16.19 2.25 0.04 -1.17 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 33 H 0.07 0.71 6.29 -51.93 -0.33 0.39 16 34 H 0.40 3.45 8.12 -40.82 -0.33 3.12 16 35 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.36 8.40 5.53 -40.82 -0.23 8.18 16 40 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -35.08 375.36 -8.44 -43.52 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.25 Total: 7.33 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.46 Total: -7.86 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.18 Total: -55.30 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.08 Total: -8.31 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.07 Total: -2.66 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.08 -8.44 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700636155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.833 kcal (2) G-P(sol) polarization free energy of solvation -35.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds