Wall clock time and date at job start Tue Mar 31 2020 21:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 O 1.21283 * 120.00218 * 240.00192 * 4 2 1 6 6 N 1.34780 * 119.99465 * 60.00368 * 4 2 1 7 7 C 1.46505 * 119.99662 * 179.97438 * 6 4 2 8 8 H 1.08996 * 112.84716 * 336.19374 * 7 6 4 9 9 C 1.53781 * 113.61289 * 107.50498 * 7 6 4 10 10 C 1.53776 * 87.08229 * 89.11338 * 9 7 6 11 11 H 1.09002 * 113.69226 * 270.87152 * 10 9 7 12 12 C 1.53001 * 113.61315 * 139.97687 * 10 9 7 13 13 N 1.46496 * 109.46827 * 87.50412 * 12 10 9 14 14 C 1.36944 * 119.99984 * 179.97438 * 13 12 10 15 15 H 1.07999 * 119.99867 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00016 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99998 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99985 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47458 * 89.99664 * 18 16 14 20 20 H 1.48506 * 109.46949 * 210.00233 * 18 16 14 21 21 H 1.48499 * 109.46976 * 329.99431 * 18 16 14 22 22 C 1.53779 * 113.61048 * 205.00192 * 7 6 4 23 23 C 1.50706 * 109.46859 * 120.00432 * 2 1 3 24 24 C 1.38415 * 120.02540 * 59.72139 * 23 2 1 25 25 F 1.35091 * 120.01530 * 0.02562 * 24 23 2 26 26 C 1.38476 * 119.97078 * 179.79558 * 24 23 2 27 27 C 1.38212 * 120.02795 * 0.47850 * 26 24 23 28 28 C 1.38208 * 120.04582 * 359.75179 * 27 26 24 29 29 C 1.38417 * 120.02024 * 239.99524 * 23 2 1 30 30 F 1.35105 * 120.01737 * 0.02562 * 29 23 2 31 31 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 32 32 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 33 33 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00110 * 0.02562 * 6 4 2 35 35 H 1.09005 * 113.61159 * 203.66470 * 9 7 6 36 36 H 1.08997 * 113.61494 * 334.56109 * 9 7 6 37 37 H 1.09000 * 109.47271 * 207.49884 * 12 10 9 38 38 H 1.08999 * 109.47342 * 327.50484 * 12 10 9 39 39 H 0.96999 * 120.00012 * 0.02562 * 13 12 10 40 40 H 0.97003 * 119.99938 * 179.97438 * 17 16 14 41 41 H 1.08993 * 113.61768 * 25.43416 * 22 7 6 42 42 H 1.09004 * 113.61102 * 156.25626 * 22 7 6 43 43 H 1.08007 * 119.98823 * 180.23049 * 26 24 23 44 44 H 1.07991 * 119.97446 * 179.73100 * 27 26 24 45 45 H 1.08001 * 119.98453 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 1 3.1010 -1.5180 -3.4657 9 6 1.1042 -1.7242 -4.3987 10 6 0.8302 -0.4344 -5.1899 11 1 0.0933 0.2183 -4.7219 12 6 0.5535 -0.6739 -6.6755 13 7 -0.8757 -0.9299 -6.8709 14 6 -1.3622 -1.1726 -8.1277 15 1 -0.6925 -1.1749 -8.9749 16 6 -2.7165 -1.4147 -8.3129 17 7 -3.1842 -1.6475 -9.5210 18 14 -3.8753 -1.4086 -6.8478 19 1 -4.4027 -0.0362 -6.6395 20 1 -5.0038 -2.3389 -7.1054 21 1 -3.1406 -1.8461 -5.6337 22 6 2.2849 -0.0353 -4.8908 23 6 2.0323 -0.7105 1.2305 24 6 1.6934 -2.0340 1.4528 25 9 0.9126 -2.6897 0.5667 26 6 2.1590 -2.6871 2.5817 27 6 2.9537 -2.0150 3.4912 28 6 3.2887 -0.6921 3.2725 29 6 2.8281 -0.0384 2.1419 30 9 3.1547 1.2552 1.9292 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1494 0.5390 -2.5435 35 1 1.4931 -2.5379 -5.0110 36 1 0.2738 -2.0313 -3.7629 37 1 0.8460 0.2074 -7.2463 38 1 1.1270 -1.5353 -7.0177 39 1 -1.4774 -0.9267 -6.1101 40 1 -4.1305 -1.8170 -9.6503 41 1 2.4077 1.0212 -4.6525 42 1 2.9976 -0.3864 -5.6371 43 1 1.8979 -3.7209 2.7536 44 1 3.3127 -2.5238 4.3734 45 1 3.9093 -0.1677 3.9840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700636155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:19 Heat of formation + Delta-G solvation = -90.871286 kcal Electronic energy + Delta-G solvation = -29095.857635 eV Core-core repulsion = 24749.345770 eV Total energy + Delta-G solvation = -4346.511865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.07783 -50.02970 -41.51973 -40.13527 -39.21813 -36.50388 -35.49654 -34.32489 -33.13776 -31.26626 -30.56270 -28.84040 -26.65804 -26.05900 -24.95331 -23.90241 -23.62238 -22.86934 -21.35458 -20.51389 -19.49727 -19.15587 -18.82794 -17.78607 -17.38159 -16.90986 -16.75597 -16.59562 -16.53925 -16.34589 -16.18358 -15.93097 -15.75745 -15.44479 -15.12035 -14.94575 -14.79267 -14.46511 -13.94277 -13.79662 -13.73976 -13.52066 -13.34913 -13.31638 -13.12734 -12.99822 -12.90791 -12.73991 -12.52373 -12.19169 -11.97591 -11.88595 -11.72963 -11.43295 -11.21195 -10.95279 -10.89954 -10.08410 -9.91396 -9.73211 -9.28666 -8.03917 -5.36878 -0.05891 -0.00208 1.36001 1.40072 1.47458 1.50487 2.02187 2.42971 2.47297 2.88727 3.21319 3.26700 3.39652 3.45405 3.52839 3.57728 3.81029 3.84773 3.87476 3.91554 4.03454 4.09467 4.19111 4.22900 4.51124 4.60704 4.68506 4.71948 4.81755 4.82722 4.86004 4.87474 4.88910 4.96665 5.01511 5.05260 5.10571 5.15180 5.20335 5.23838 5.32100 5.63262 5.75396 5.77763 6.20538 6.46151 7.07536 7.15151 7.84756 8.03715 9.17811 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019212 B = 0.002403 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.073450 B =11648.403353 C =12202.202865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 H 0.130 0.870 4 C 0.519 3.481 5 O -0.570 6.570 6 N -0.697 5.697 7 C 0.125 3.875 8 H 0.090 0.910 9 C -0.145 4.145 10 C -0.113 4.113 11 H 0.097 0.903 12 C 0.162 3.838 13 N -0.758 5.758 14 C -0.235 4.235 15 H 0.055 0.945 16 C -0.068 4.068 17 N -0.985 5.985 18 Si 0.959 3.041 19 H -0.274 1.274 20 H -0.297 1.297 21 H -0.254 1.254 22 C -0.116 4.116 23 C -0.158 4.158 24 C 0.130 3.870 25 F -0.141 7.141 26 C -0.172 4.172 27 C -0.051 4.051 28 C -0.162 4.162 29 C 0.119 3.881 30 F -0.134 7.134 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.027 0.973 38 H 0.022 0.978 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.157 0.843 44 H 0.182 0.818 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.653 5.470 33.384 36.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 H 0.148 0.852 4 C 0.306 3.694 5 O -0.448 6.448 6 N -0.349 5.349 7 C 0.019 3.981 8 H 0.109 0.891 9 C -0.184 4.184 10 C -0.132 4.132 11 H 0.115 0.885 12 C 0.036 3.964 13 N -0.403 5.403 14 C -0.366 4.366 15 H 0.073 0.927 16 C -0.259 4.259 17 N -0.636 5.636 18 Si 0.786 3.214 19 H -0.200 1.200 20 H -0.224 1.224 21 H -0.179 1.179 22 C -0.155 4.155 23 C -0.160 4.160 24 C 0.111 3.889 25 F -0.119 7.119 26 C -0.191 4.191 27 C -0.068 4.068 28 C -0.180 4.180 29 C 0.099 3.901 30 F -0.113 7.113 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.252 0.748 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.040 0.960 39 H 0.199 0.801 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.174 0.826 44 H 0.199 0.801 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 15.169 4.780 33.180 36.794 hybrid contribution -1.448 0.072 -0.488 1.530 sum 13.720 4.852 32.692 35.785 Atomic orbital electron populations 1.21885 0.90192 1.03365 1.04855 1.20193 0.99177 1.00964 0.88527 0.85205 1.20763 0.79346 0.84033 0.85242 1.90692 1.39410 1.27566 1.87148 1.45541 1.53164 1.31882 1.04273 1.21758 0.97056 0.95004 0.84263 0.89150 1.23451 0.98924 0.97467 0.98540 1.22754 0.98293 0.97859 0.94244 0.88523 1.20814 0.83391 0.97434 0.94744 1.42728 1.05615 1.87258 1.04731 1.19074 0.92552 1.38940 0.86080 0.92720 1.25560 0.98677 1.02371 0.99289 1.69894 1.13979 1.57232 1.22466 0.85352 0.78435 0.77809 0.79843 1.19996 1.22367 1.17860 1.23218 0.95637 1.00822 0.95811 1.19475 1.03695 0.94455 0.98382 1.17503 0.92993 0.89751 0.88674 1.91476 1.71898 1.80747 1.67800 1.21564 1.01140 1.02539 0.93820 1.21298 0.93670 0.92846 0.99000 1.21548 1.03016 0.96371 0.97102 1.17362 0.97656 0.79099 0.95937 1.91497 1.90825 1.34087 1.94868 0.89522 0.89599 0.92779 0.74834 0.89722 0.92603 0.95467 0.95998 0.80149 0.93342 0.88739 0.87788 0.82566 0.80114 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.87 71.98 0.64 -1.59 16 2 C -0.07 -1.23 2.79 -12.28 -0.03 -1.26 16 3 H 0.13 1.86 7.13 -2.39 -0.02 1.84 16 4 C 0.52 12.40 6.60 87.66 0.58 12.98 16 5 O -0.57 -18.19 14.18 -3.04 -0.04 -18.23 16 6 N -0.70 -14.01 5.16 -440.02 -2.27 -16.28 16 7 C 0.12 2.86 4.32 45.52 0.20 3.05 16 8 H 0.09 2.32 7.46 -2.39 -0.02 2.30 16 9 C -0.15 -3.97 7.43 31.12 0.23 -3.74 16 10 C -0.11 -3.03 3.63 -10.27 -0.04 -3.06 16 11 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 12 C 0.16 6.01 6.10 86.38 0.53 6.54 16 13 N -0.76 -35.68 5.41 -343.45 -1.86 -37.54 16 14 C -0.24 -13.71 10.47 84.03 0.88 -12.83 16 15 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 17 N -0.98 -64.15 13.97 21.65 0.30 -63.84 16 18 Si 0.96 46.05 27.74 68.60 1.90 47.95 16 19 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16 22 C -0.12 -2.35 7.39 31.12 0.23 -2.12 16 23 C -0.16 -3.12 4.40 -19.78 -0.09 -3.20 16 24 C 0.13 2.76 6.14 22.37 0.14 2.89 16 25 F -0.14 -3.69 13.81 44.97 0.62 -3.07 16 26 C -0.17 -2.52 10.02 22.32 0.22 -2.29 16 27 C -0.05 -0.47 10.04 22.26 0.22 -0.24 16 28 C -0.16 -1.78 10.02 22.32 0.22 -1.55 16 29 C 0.12 1.96 7.25 22.37 0.16 2.13 16 30 F -0.13 -2.26 16.19 44.97 0.73 -1.53 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.03 7.56 -2.39 -0.02 1.02 16 33 H 0.05 1.05 6.29 -2.39 -0.02 1.03 16 34 H 0.41 6.04 8.12 -92.71 -0.75 5.29 16 35 H 0.08 2.45 7.90 -2.38 -0.02 2.43 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.02 0.85 7.84 -2.39 -0.02 0.83 16 39 H 0.37 16.35 5.53 -92.71 -0.51 15.84 16 40 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 2.01 8.10 -2.39 -0.02 1.99 16 43 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.18 0.26 8.06 -2.92 -0.02 0.23 16 45 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -78.65 375.36 3.66 -74.99 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.29 Total: 25.45 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: 4.56 Total: -7.89 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -3.82 Total: -117.66 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.04 Total: -18.23 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 1.35 Total: -4.60 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.95 kcal Total: -78.65 3.66 -74.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700636155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.881 kcal (2) G-P(sol) polarization free energy of solvation -78.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds