Wall clock time and date at job start Tue Mar 31 2020 21:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47295 * 2 1 4 4 C 1.50704 * 109.46923 * 119.99942 * 2 1 3 5 5 O 1.21280 * 119.99905 * 120.00242 * 4 2 1 6 6 N 1.34776 * 120.00197 * 299.99884 * 4 2 1 7 7 C 1.46496 * 120.00015 * 180.02562 * 6 4 2 8 8 H 1.09004 * 112.90889 * 336.25053 * 7 6 4 9 9 C 1.53784 * 113.61524 * 107.50411 * 7 6 4 10 10 C 1.53779 * 87.08045 * 89.11591 * 9 7 6 11 11 H 1.09006 * 113.61307 * 270.88660 * 10 9 7 12 12 C 1.53003 * 113.69268 * 139.99100 * 10 9 7 13 13 N 1.46503 * 109.46622 * 87.46383 * 12 10 9 14 14 C 1.36941 * 119.99762 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99955 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99893 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47233 * 59.99966 * 18 16 14 20 20 H 1.48503 * 109.46946 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47048 * 300.00139 * 18 16 14 22 22 C 1.53779 * 87.08402 * 25.43458 * 10 9 7 23 23 C 1.50697 * 109.47322 * 239.99731 * 2 1 3 24 24 C 1.38260 * 119.96629 * 299.72622 * 23 2 1 25 25 C 1.38214 * 120.06786 * 179.76479 * 24 23 2 26 26 C 1.38415 * 120.00151 * 0.50627 * 25 24 23 27 27 F 1.35101 * 120.03324 * 179.72224 * 26 25 24 28 28 C 1.38646 * 119.92519 * 359.75198 * 26 25 24 29 29 F 1.35102 * 120.03087 * 180.02562 * 28 26 25 30 30 C 1.38218 * 119.96215 * 120.00164 * 23 2 1 31 31 H 1.08994 * 109.47164 * 59.99818 * 1 2 3 32 32 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47406 * 299.99890 * 1 2 3 34 34 H 0.96998 * 119.99607 * 0.02562 * 6 4 2 35 35 H 1.09002 * 113.61478 * 203.66556 * 9 7 6 36 36 H 1.09004 * 113.61162 * 334.56734 * 9 7 6 37 37 H 1.08996 * 109.47332 * 207.46465 * 12 10 9 38 38 H 1.08996 * 109.47070 * 327.47082 * 12 10 9 39 39 H 0.96996 * 120.00465 * 359.97438 * 13 12 10 40 40 H 0.97000 * 120.00169 * 179.97438 * 17 16 14 41 41 H 1.08997 * 113.61646 * 220.02209 * 22 10 9 42 42 H 1.08998 * 113.69354 * 89.12517 * 22 10 9 43 43 H 1.07992 * 119.96273 * 0.02562 * 24 23 2 44 44 H 1.07998 * 119.99638 * 180.25467 * 25 24 23 45 45 H 1.07996 * 120.00178 * 359.97438 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6507 8 1 2.4403 -1.9864 3.4667 9 6 3.2980 -0.1718 4.3982 10 6 2.1731 0.5158 5.1897 11 1 1.8033 1.4275 4.7203 12 6 2.4896 0.6986 6.6754 13 7 3.2067 1.9613 6.8700 14 6 3.5973 2.3401 8.1267 15 1 3.3772 1.7078 8.9742 16 6 4.2771 3.5362 8.3111 17 7 4.5458 4.3064 7.2783 18 14 4.8106 4.0526 10.0252 19 1 5.7271 3.0286 10.5879 20 1 5.5124 5.3593 9.9525 21 1 3.6159 4.1807 10.8979 22 6 1.3127 -0.7233 4.8912 23 6 2.0323 -0.7104 -1.2304 24 6 1.7026 -2.0358 -1.4456 25 6 2.1582 -2.6880 -2.5758 26 6 2.9541 -2.0175 -3.4883 27 9 3.4044 -2.6560 -4.5905 28 6 3.2891 -0.6900 -3.2698 29 9 4.0653 -0.0332 -4.1594 30 6 2.8270 -0.0380 -2.1397 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.1487 0.5385 2.5436 35 1 3.9362 -0.8091 5.0104 36 1 3.8636 0.5092 3.7621 37 1 1.5607 0.7166 7.2453 38 1 3.1108 -0.1286 7.0190 39 1 3.4053 2.5286 6.1088 40 1 5.0206 5.1424 7.4072 41 1 0.2755 -0.4877 4.6531 42 1 1.4069 -1.5121 5.6375 43 1 1.0850 -2.5607 -0.7319 44 1 1.8965 -3.7221 -2.7448 45 1 3.0872 0.9961 -1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700643933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:27 Heat of formation + Delta-G solvation = -76.089019 kcal Electronic energy + Delta-G solvation = -28111.206747 eV Core-core repulsion = 23765.335889 eV Total energy + Delta-G solvation = -4345.870858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.74668 -48.82369 -40.78648 -39.46345 -38.15040 -34.62745 -34.43964 -33.02307 -31.28637 -30.85877 -29.41314 -26.90982 -25.55541 -25.22195 -23.65474 -23.55597 -22.56095 -21.44284 -20.47108 -19.15391 -18.27895 -17.85199 -17.36968 -17.09058 -16.72144 -16.54778 -16.04838 -15.62468 -15.23665 -15.04679 -14.81057 -14.68036 -14.51568 -14.28413 -14.14145 -13.83282 -13.47436 -13.32129 -13.26245 -12.88501 -12.75170 -12.44646 -12.31570 -12.14168 -12.02201 -11.90930 -11.66606 -11.44435 -11.05029 -10.82749 -10.51867 -10.38567 -10.13625 -9.99143 -9.86206 -9.62905 -9.40960 -9.07851 -8.96321 -8.85593 -6.91741 -5.77120 -3.05382 0.53176 0.65615 2.41142 2.78528 3.15300 3.43369 3.44541 3.47689 3.48763 3.91894 4.03740 4.16845 4.46400 4.56217 4.57888 4.62679 4.66698 4.71834 4.79340 4.81507 5.06807 5.09580 5.15421 5.29128 5.37802 5.42571 5.52990 5.56959 5.59979 5.68664 5.70004 5.82061 5.89653 5.96160 5.98427 6.07495 6.19724 6.27138 6.37640 6.39421 6.58497 6.75999 6.90761 7.33617 7.68713 8.03277 8.42218 9.53104 10.12050 10.46355 11.45793 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.001892 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.164380 B =14799.473600 C =15533.767571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.074 4.074 3 H 0.112 0.888 4 C 0.520 3.480 5 O -0.532 6.532 6 N -0.705 5.705 7 C 0.115 3.885 8 H 0.099 0.901 9 C -0.139 4.139 10 C -0.113 4.113 11 H 0.087 0.913 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.138 4.138 23 C -0.047 4.047 24 C -0.064 4.064 25 C -0.126 4.126 26 C 0.066 3.934 27 F -0.131 7.131 28 C 0.065 3.935 29 F -0.129 7.129 30 C -0.117 4.117 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.402 0.598 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.258 -12.381 -21.422 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.130 0.870 4 C 0.305 3.695 5 O -0.408 6.408 6 N -0.356 5.356 7 C 0.010 3.990 8 H 0.117 0.883 9 C -0.177 4.177 10 C -0.132 4.132 11 H 0.106 0.894 12 C 0.034 3.966 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.176 4.176 23 C -0.048 4.048 24 C -0.083 4.083 25 C -0.145 4.145 26 C 0.046 3.954 27 F -0.109 7.109 28 C 0.045 3.955 29 F -0.108 7.108 30 C -0.135 4.135 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.237 0.763 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.216 0.784 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.156 0.844 44 H 0.164 0.836 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.670 -13.094 -21.395 27.259 hybrid contribution 0.532 1.048 0.445 1.257 sum -10.138 -12.046 -20.950 26.207 Atomic orbital electron populations 1.21829 0.91309 1.03374 1.03510 1.20327 0.98184 1.00711 0.90274 0.86965 1.20322 0.80204 0.84621 0.84338 1.90737 1.37271 1.26204 1.86556 1.45656 1.53158 1.31799 1.04998 1.21958 0.96192 0.97185 0.83633 0.88266 1.23413 0.96571 0.99349 0.98414 1.22756 0.95985 0.96654 0.97759 0.89446 1.20638 0.94719 0.89852 0.91354 1.42337 1.67716 1.20365 1.07153 1.19199 1.29477 1.02495 0.85911 0.91292 1.24740 1.01526 0.97545 0.97282 1.69644 1.46333 1.13725 1.28631 0.86264 0.78314 0.77597 0.83992 1.21279 1.21694 1.21293 1.23310 0.98327 0.99396 0.96586 1.19194 0.96907 0.94128 0.94572 1.20867 0.98375 0.93471 0.95558 1.21056 0.98294 1.01247 0.93919 1.17718 1.00859 0.90021 0.86789 1.91527 1.87498 1.81386 1.50504 1.17569 0.97264 0.89794 0.90863 1.91536 1.72291 1.80488 1.66483 1.20951 0.98453 1.01444 0.92690 0.90861 0.91571 0.91109 0.76313 0.89134 0.91337 0.96415 0.96238 0.78356 0.93496 0.91264 0.88726 0.84393 0.83624 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.90 37.16 0.33 -0.34 16 2 C -0.07 -0.51 2.90 -92.92 -0.27 -0.78 16 3 H 0.11 0.62 7.87 -51.93 -0.41 0.21 16 4 C 0.52 5.32 7.02 -10.98 -0.08 5.24 16 5 O -0.53 -7.44 14.69 5.56 0.08 -7.36 16 6 N -0.71 -6.68 5.16 -53.01 -0.27 -6.95 16 7 C 0.12 1.31 4.32 -67.12 -0.29 1.02 16 8 H 0.10 1.21 7.47 -51.93 -0.39 0.82 16 9 C -0.14 -1.95 7.43 -25.92 -0.19 -2.14 16 10 C -0.11 -1.63 3.63 -89.81 -0.33 -1.96 16 11 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 12 C 0.16 3.12 6.10 -4.04 -0.02 3.10 16 13 N -0.73 -18.27 5.60 -59.91 -0.34 -18.61 16 14 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 15 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 16 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.14 -1.50 7.39 -25.92 -0.19 -1.69 16 23 C -0.05 -0.39 4.40 -104.62 -0.46 -0.85 16 24 C -0.06 -0.53 7.92 -39.58 -0.31 -0.84 16 25 C -0.13 -1.04 10.02 -39.52 -0.40 -1.44 16 26 C 0.07 0.66 7.31 -39.37 -0.29 0.38 16 27 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 28 C 0.07 0.66 7.31 -39.37 -0.29 0.38 16 29 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 30 C -0.12 -1.00 9.65 -39.53 -0.38 -1.38 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.32 7.40 -51.93 -0.38 -0.07 16 33 H 0.07 0.27 7.56 -51.93 -0.39 -0.13 16 34 H 0.40 2.96 8.12 -40.82 -0.33 2.63 16 35 H 0.09 1.32 7.90 -51.93 -0.41 0.91 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.39 7.85 -51.93 -0.41 -0.02 16 39 H 0.38 10.04 7.67 -40.82 -0.31 9.72 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.14 1.00 7.51 -52.49 -0.39 0.61 16 44 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.15 0.98 7.94 -52.49 -0.42 0.56 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -33.55 383.84 -8.73 -42.27 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.35 Total: 6.48 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.41 Total: -8.71 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.12 Total: -53.00 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.08 Total: -7.36 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.55 -8.73 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700643933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.815 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds