Wall clock time and date at job start Tue Mar 31 2020 21:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47295 * 2 1 4 4 C 1.50704 * 109.46923 * 119.99942 * 2 1 3 5 5 O 1.21280 * 119.99905 * 120.00242 * 4 2 1 6 6 N 1.34776 * 120.00197 * 299.99884 * 4 2 1 7 7 C 1.46496 * 120.00015 * 180.02562 * 6 4 2 8 8 H 1.09004 * 112.90889 * 336.25053 * 7 6 4 9 9 C 1.53784 * 113.61524 * 107.50411 * 7 6 4 10 10 C 1.53779 * 87.08045 * 89.11591 * 9 7 6 11 11 H 1.09006 * 113.61307 * 270.88660 * 10 9 7 12 12 C 1.53003 * 113.69268 * 139.99100 * 10 9 7 13 13 N 1.46503 * 109.46622 * 87.46383 * 12 10 9 14 14 C 1.36941 * 119.99762 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.38807 * 119.99955 * 179.97438 * 14 13 12 17 17 N 1.31615 * 120.00155 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99893 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47233 * 59.99966 * 18 16 14 20 20 H 1.48503 * 109.46946 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47048 * 300.00139 * 18 16 14 22 22 C 1.53779 * 87.08402 * 25.43458 * 10 9 7 23 23 C 1.50697 * 109.47322 * 239.99731 * 2 1 3 24 24 C 1.38260 * 119.96629 * 299.72622 * 23 2 1 25 25 C 1.38214 * 120.06786 * 179.76479 * 24 23 2 26 26 C 1.38415 * 120.00151 * 0.50627 * 25 24 23 27 27 F 1.35101 * 120.03324 * 179.72224 * 26 25 24 28 28 C 1.38646 * 119.92519 * 359.75198 * 26 25 24 29 29 F 1.35102 * 120.03087 * 180.02562 * 28 26 25 30 30 C 1.38218 * 119.96215 * 120.00164 * 23 2 1 31 31 H 1.08994 * 109.47164 * 59.99818 * 1 2 3 32 32 H 1.09000 * 109.47295 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47406 * 299.99890 * 1 2 3 34 34 H 0.96998 * 119.99607 * 0.02562 * 6 4 2 35 35 H 1.09002 * 113.61478 * 203.66556 * 9 7 6 36 36 H 1.09004 * 113.61162 * 334.56734 * 9 7 6 37 37 H 1.08996 * 109.47332 * 207.46465 * 12 10 9 38 38 H 1.08996 * 109.47070 * 327.47082 * 12 10 9 39 39 H 0.96996 * 120.00465 * 359.97438 * 13 12 10 40 40 H 0.97000 * 120.00169 * 179.97438 * 17 16 14 41 41 H 1.08997 * 113.61646 * 220.02209 * 22 10 9 42 42 H 1.08998 * 113.69354 * 89.12517 * 22 10 9 43 43 H 1.07992 * 119.96273 * 0.02562 * 24 23 2 44 44 H 1.07998 * 119.99638 * 180.25467 * 25 24 23 45 45 H 1.07996 * 120.00178 * 359.97438 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6507 8 1 2.4403 -1.9864 3.4667 9 6 3.2980 -0.1718 4.3982 10 6 2.1731 0.5158 5.1897 11 1 1.8033 1.4275 4.7203 12 6 2.4896 0.6986 6.6754 13 7 3.2067 1.9613 6.8700 14 6 3.5973 2.3401 8.1267 15 1 3.3772 1.7078 8.9742 16 6 4.2771 3.5362 8.3111 17 7 4.5458 4.3064 7.2783 18 14 4.8106 4.0526 10.0252 19 1 5.7271 3.0286 10.5879 20 1 5.5124 5.3593 9.9525 21 1 3.6159 4.1807 10.8979 22 6 1.3127 -0.7233 4.8912 23 6 2.0323 -0.7104 -1.2304 24 6 1.7026 -2.0358 -1.4456 25 6 2.1582 -2.6880 -2.5758 26 6 2.9541 -2.0175 -3.4883 27 9 3.4044 -2.6560 -4.5905 28 6 3.2891 -0.6900 -3.2698 29 9 4.0653 -0.0332 -4.1594 30 6 2.8270 -0.0380 -2.1397 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.1487 0.5385 2.5436 35 1 3.9362 -0.8091 5.0104 36 1 3.8636 0.5092 3.7621 37 1 1.5607 0.7166 7.2453 38 1 3.1108 -0.1286 7.0190 39 1 3.4053 2.5286 6.1088 40 1 5.0206 5.1424 7.4072 41 1 0.2755 -0.4877 4.6531 42 1 1.4069 -1.5121 5.6375 43 1 1.0850 -2.5607 -0.7319 44 1 1.8965 -3.7221 -2.7448 45 1 3.0872 0.9961 -1.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700643933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:26 Heat of formation + Delta-G solvation = -96.361470 kcal Electronic energy + Delta-G solvation = -28112.085826 eV Core-core repulsion = 23765.335889 eV Total energy + Delta-G solvation = -4346.749937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.53831 -49.62431 -41.58888 -40.32258 -39.06698 -36.31734 -35.19161 -34.14907 -32.70463 -31.93081 -30.06364 -28.45395 -26.58935 -25.93677 -25.11837 -24.31274 -23.57576 -22.74815 -21.22019 -20.27558 -19.05810 -19.01102 -18.57976 -18.09912 -17.51240 -17.34891 -16.92653 -16.69684 -16.34954 -16.05346 -15.89108 -15.63061 -15.54596 -15.35122 -15.13059 -14.98541 -14.78594 -14.48308 -14.05177 -13.80742 -13.70061 -13.37305 -13.29592 -13.09698 -12.96464 -12.88125 -12.66209 -12.59587 -12.44070 -12.22501 -12.00559 -11.90986 -11.69944 -11.31529 -11.10912 -10.84377 -10.78978 -10.08717 -9.97074 -9.67520 -8.96544 -7.94392 -5.22279 -0.16609 -0.00345 1.47390 1.50255 1.56361 1.62878 2.05219 2.45756 2.56801 2.76071 3.24578 3.37951 3.38561 3.54411 3.63675 3.64247 3.81618 3.97553 3.98406 4.03530 4.08585 4.21275 4.26578 4.36068 4.60362 4.68266 4.76676 4.80891 4.82969 4.88799 4.91861 4.93589 4.96245 4.97845 5.02419 5.04130 5.19221 5.29637 5.31708 5.37790 5.40997 5.50417 5.70757 5.72855 6.28650 6.58880 7.27092 7.34656 8.13314 8.35276 9.28936 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.001892 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.164380 B =14799.473600 C =15533.767571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 H 0.131 0.869 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.697 5.697 7 C 0.129 3.871 8 H 0.095 0.905 9 C -0.146 4.146 10 C -0.111 4.111 11 H 0.088 0.912 12 C 0.158 3.842 13 N -0.745 5.745 14 C -0.246 4.246 15 H 0.074 0.926 16 C -0.078 4.078 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.276 1.276 22 C -0.116 4.116 23 C -0.051 4.051 24 C -0.066 4.066 25 C -0.123 4.123 26 C 0.047 3.953 27 F -0.141 7.141 28 C 0.045 3.955 29 F -0.141 7.141 30 C -0.117 4.117 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.415 0.585 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.022 0.978 38 H 0.017 0.983 39 H 0.373 0.627 40 H 0.251 0.749 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.168 -12.823 -20.844 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.088 4.088 3 H 0.149 0.851 4 C 0.306 3.694 5 O -0.451 6.451 6 N -0.349 5.349 7 C 0.023 3.977 8 H 0.113 0.887 9 C -0.185 4.185 10 C -0.129 4.129 11 H 0.107 0.893 12 C 0.032 3.968 13 N -0.387 5.387 14 C -0.378 4.378 15 H 0.092 0.908 16 C -0.270 4.270 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.206 1.206 20 H -0.222 1.222 21 H -0.202 1.202 22 C -0.154 4.154 23 C -0.051 4.051 24 C -0.084 4.084 25 C -0.142 4.142 26 C 0.027 3.973 27 F -0.120 7.120 28 C 0.025 3.975 29 F -0.120 7.120 30 C -0.136 4.136 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.035 0.965 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.167 0.833 44 H 0.184 0.816 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.625 -13.556 -20.808 27.859 hybrid contribution 1.117 1.125 0.288 1.612 sum -11.508 -12.431 -20.520 26.609 Atomic orbital electron populations 1.21866 0.89152 1.03880 1.04851 1.20369 0.99800 1.00813 0.87771 0.85145 1.20873 0.79289 0.84077 0.85156 1.90726 1.39123 1.28138 1.87136 1.45587 1.52893 1.32030 1.04342 1.21710 0.94986 0.96575 0.84397 0.88743 1.23429 0.96992 0.99374 0.98664 1.22689 0.97485 0.98373 0.94381 0.89346 1.20846 0.93889 0.87230 0.94830 1.42573 1.68161 1.22063 1.05928 1.19624 1.28514 1.02396 0.87264 0.90794 1.25564 1.02447 0.97974 1.00992 1.69800 1.47612 1.14022 1.30604 0.85224 0.78044 0.76829 0.79750 1.20580 1.22182 1.20244 1.23212 0.99038 0.97189 0.95985 1.19424 0.96502 0.94339 0.94878 1.21090 0.98207 0.93635 0.95513 1.21292 0.97404 1.02130 0.93357 1.17987 1.01872 0.90296 0.87119 1.91492 1.87791 1.81578 1.51135 1.17850 0.97996 0.90164 0.91495 1.91497 1.72769 1.80734 1.67016 1.21158 0.98038 1.02285 0.92083 0.89636 0.91523 0.89694 0.74781 0.90172 0.93094 0.96034 0.96494 0.79512 0.94047 0.88647 0.87937 0.83270 0.81635 0.81838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.90 71.98 0.64 -0.21 16 2 C -0.07 -0.76 2.90 -12.29 -0.04 -0.80 16 3 H 0.13 1.05 7.87 -2.39 -0.02 1.03 16 4 C 0.52 9.56 7.02 87.66 0.62 10.18 16 5 O -0.57 -15.34 14.69 -3.03 -0.04 -15.38 16 6 N -0.70 -11.49 5.16 -440.02 -2.27 -13.76 16 7 C 0.13 2.68 4.32 45.52 0.20 2.88 16 8 H 0.09 2.15 7.47 -2.39 -0.02 2.13 16 9 C -0.15 -4.01 7.43 31.12 0.23 -3.78 16 10 C -0.11 -3.04 3.63 -10.27 -0.04 -3.08 16 11 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 12 C 0.16 5.96 6.10 86.38 0.53 6.49 16 13 N -0.74 -37.23 5.60 -343.45 -1.92 -39.16 16 14 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 15 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.08 -4.45 5.50 84.86 0.47 -3.99 16 17 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 18 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 C -0.12 -2.19 7.39 31.12 0.23 -1.96 16 23 C -0.05 -0.76 4.40 -19.86 -0.09 -0.84 16 24 C -0.07 -0.99 7.92 22.27 0.18 -0.82 16 25 C -0.12 -1.92 10.02 22.31 0.22 -1.70 16 26 C 0.05 0.95 7.31 22.41 0.16 1.11 16 27 F -0.14 -3.17 17.18 44.97 0.77 -2.40 16 28 C 0.04 0.92 7.31 22.41 0.16 1.08 16 29 F -0.14 -3.27 17.18 44.97 0.77 -2.50 16 30 C -0.12 -1.90 9.65 22.31 0.22 -1.68 16 31 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.07 0.43 7.40 -2.39 -0.02 0.41 16 33 H 0.08 0.31 7.56 -2.38 -0.02 0.29 16 34 H 0.41 4.78 8.12 -92.71 -0.75 4.03 16 35 H 0.08 2.35 7.90 -2.39 -0.02 2.33 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.66 7.85 -2.39 -0.02 0.64 16 39 H 0.37 19.81 7.67 -92.71 -0.71 19.10 16 40 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.10 1.84 8.10 -2.39 -0.02 1.82 16 43 H 0.15 1.87 7.51 -2.91 -0.02 1.85 16 44 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 45 H 0.16 1.95 7.94 -2.91 -0.02 1.93 16 Total: -1.00 -73.18 383.84 3.72 -69.46 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.43 Total: 24.55 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 4.53 Total: -9.98 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -3.91 Total: -111.74 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.04 Total: -15.38 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.55 Total: -4.90 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -73.18 3.72 -69.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700643933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.900 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds