Wall clock time and date at job start Tue Mar 31 2020 21:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.08996 * 112.84823 * 316.19572 * 8 7 6 10 10 C 1.53787 * 113.61355 * 87.50373 * 8 7 6 11 11 C 1.53783 * 87.08023 * 139.98452 * 10 8 7 12 12 H 1.08996 * 113.60854 * 220.01945 * 11 10 8 13 13 N 1.46499 * 113.61670 * 89.11251 * 11 10 8 14 14 C 1.36938 * 119.99690 * 107.50005 * 13 11 10 15 15 H 1.07998 * 120.00135 * 0.02562 * 14 13 11 16 16 C 1.38808 * 119.99915 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99885 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99960 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47164 * 90.00380 * 18 16 14 20 20 H 1.48508 * 109.46914 * 210.00062 * 18 16 14 21 21 H 1.48499 * 109.46984 * 329.99727 * 18 16 14 22 22 C 1.53782 * 113.61417 * 185.00090 * 8 7 6 23 23 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 24 24 C 1.38231 * 119.98977 * 299.99797 * 23 2 1 25 25 C 1.38189 * 120.05161 * 179.97438 * 24 23 2 26 26 C 1.38490 * 120.02553 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.01487 * 180.02562 * 26 25 24 28 28 C 1.38401 * 119.97699 * 0.02761 * 26 25 24 29 29 C 1.38444 * 119.94313 * 359.70023 * 28 26 25 30 30 F 1.35104 * 120.00603 * 180.29609 * 29 28 26 31 31 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 33 33 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 36 36 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 37 37 H 1.08998 * 113.61128 * 254.53330 * 10 8 7 38 38 H 1.08998 * 113.61325 * 25.42994 * 10 8 7 39 39 H 0.96996 * 120.00346 * 287.50269 * 13 11 10 40 40 H 0.97008 * 119.99619 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.61616 * 334.56263 * 22 8 7 42 42 H 1.09000 * 113.61435 * 105.38746 * 22 8 7 43 43 H 1.08000 * 119.97331 * 0.02562 * 24 23 2 44 44 H 1.08001 * 119.98791 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.02546 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 1 1.7614 0.8578 4.8304 10 6 0.2900 -0.7087 5.3607 11 6 0.8197 -0.6050 6.8007 12 1 0.4952 -1.4220 7.4451 13 7 0.6186 0.7136 7.4065 14 6 -0.3259 0.8812 8.3837 15 1 -0.9223 0.0413 8.7081 16 6 -0.5162 2.1305 8.9581 17 7 0.2109 3.1540 8.5631 18 14 -1.8041 2.3589 10.2917 19 1 -1.1885 2.1165 11.6211 20 1 -2.3331 3.7455 10.2366 21 1 -2.9146 1.3966 10.0774 22 6 2.2270 -0.8051 6.2137 23 6 2.0322 -0.7103 -1.2305 24 6 1.6981 -2.0337 -1.4492 25 6 2.1575 -2.6861 -2.5774 26 6 2.9529 -2.0144 -3.4907 27 9 3.4014 -2.6523 -4.5939 28 6 3.2881 -0.6894 -3.2730 29 6 2.8226 -0.0352 -2.1451 30 9 3.1441 1.2599 -1.9343 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8898 34 1 1.1490 0.5383 2.5436 35 1 1.8264 -1.9720 3.6462 36 1 3.2802 -0.9450 3.6548 37 1 -0.5128 -0.0056 5.1391 38 1 0.0579 -1.7283 5.0531 39 1 1.1544 1.4680 7.1154 40 1 0.0777 4.0271 8.9643 41 1 2.5244 -1.8511 6.1395 42 1 2.9889 -0.1805 6.6801 43 1 1.0769 -2.5579 -0.7381 44 1 1.8955 -3.7200 -2.7474 45 1 3.9086 -0.1650 -3.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707090359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:59 Heat of formation + Delta-G solvation = -78.819270 kcal Electronic energy + Delta-G solvation = -28218.032888 eV Core-core repulsion = 23872.043637 eV Total energy + Delta-G solvation = -4345.989250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.37850 -49.34601 -40.48291 -39.07443 -38.36243 -34.74130 -34.46261 -33.20511 -31.18870 -30.29265 -29.49193 -27.39102 -25.13941 -25.02599 -23.80705 -23.49635 -22.51007 -21.62790 -20.22568 -18.61892 -18.44049 -17.82638 -17.44384 -16.94420 -16.52735 -16.27991 -16.04366 -15.69327 -15.61871 -15.18227 -14.97033 -14.80925 -14.46564 -14.28644 -14.17029 -13.64373 -13.48524 -13.21661 -13.03324 -12.92880 -12.72133 -12.35543 -12.32230 -12.08193 -11.96337 -11.63965 -11.55283 -11.41231 -11.07481 -10.88207 -10.52868 -10.21327 -10.14698 -9.81725 -9.73191 -9.51269 -9.41273 -9.05986 -8.98484 -8.91673 -7.04252 -5.84638 -3.13811 0.54730 0.66475 2.50037 2.86551 3.22489 3.39064 3.44544 3.45970 3.48791 3.95890 4.08119 4.17776 4.43571 4.52216 4.58480 4.72888 4.76655 4.89429 5.00578 5.03066 5.18826 5.24792 5.38169 5.41412 5.43251 5.48164 5.54104 5.57682 5.64829 5.66672 5.75637 5.83113 5.88900 5.91540 6.06137 6.16641 6.32989 6.35479 6.37666 6.54674 6.69694 6.85367 6.99726 7.42017 7.65306 8.10283 8.34504 9.45261 10.02583 10.36698 11.37695 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.001862 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.201761 B =15032.363649 C =15384.865568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.111 0.889 4 C 0.517 3.483 5 O -0.538 6.538 6 N -0.720 5.720 7 C 0.131 3.869 8 C -0.120 4.120 9 H 0.093 0.907 10 C -0.168 4.168 11 C 0.167 3.833 12 H 0.062 0.938 13 N -0.706 5.706 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.148 4.148 23 C -0.107 4.107 24 C -0.027 4.027 25 C -0.163 4.163 26 C 0.128 3.872 27 F -0.133 7.133 28 C -0.194 4.194 29 C 0.136 3.864 30 F -0.129 7.129 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.403 0.597 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.165 -8.792 -24.392 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.096 4.096 3 H 0.129 0.871 4 C 0.302 3.698 5 O -0.415 6.415 6 N -0.371 5.371 7 C 0.008 3.992 8 C -0.138 4.138 9 H 0.111 0.889 10 C -0.209 4.209 11 C 0.055 3.945 12 H 0.080 0.920 13 N -0.344 5.344 14 C -0.374 4.374 15 H 0.090 0.910 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.188 4.188 23 C -0.109 4.109 24 C -0.045 4.045 25 C -0.182 4.182 26 C 0.109 3.891 27 F -0.111 7.111 28 C -0.214 4.214 29 C 0.117 3.883 30 F -0.107 7.107 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.561 -9.462 -24.319 26.336 hybrid contribution -0.482 1.054 0.425 1.234 sum 3.079 -8.408 -23.894 25.517 Atomic orbital electron populations 1.21822 0.91144 1.03378 1.03568 1.20232 0.98358 1.00790 0.90252 0.87077 1.20296 0.80399 0.84673 0.84463 1.90716 1.37745 1.26286 1.86729 1.46046 1.53434 1.32074 1.05540 1.21501 0.98853 0.95998 0.82848 1.22716 0.98483 1.00133 0.92517 0.88881 1.23886 0.95679 0.99826 1.01499 1.21051 0.92268 0.89856 0.91326 0.91978 1.42167 1.43786 1.04847 1.43610 1.19287 1.11731 0.94536 1.11834 0.90988 1.24768 0.99950 0.95828 1.00347 1.69662 1.42632 1.00277 1.45453 0.86168 0.81067 0.76997 0.81812 1.21654 1.21756 1.20702 1.23450 0.99654 1.00302 0.95386 1.19420 1.00302 0.95285 0.95864 1.20687 0.96458 0.92311 0.95088 1.21191 1.00445 1.01620 0.94936 1.17298 0.96915 0.90275 0.84653 1.91530 1.87398 1.81568 1.50651 1.20943 1.05982 0.94649 0.99807 1.17070 0.97364 0.79047 0.94847 1.91523 1.90943 1.33629 1.94631 0.91554 0.90904 0.91017 0.76226 0.91517 0.91827 0.91503 0.91426 0.78112 0.93427 0.90486 0.91330 0.84032 0.83923 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.90 37.16 0.33 -0.63 16 2 C -0.07 -0.67 2.88 -92.92 -0.27 -0.93 16 3 H 0.11 0.92 7.12 -51.93 -0.37 0.55 16 4 C 0.52 6.01 7.02 -10.99 -0.08 5.93 16 5 O -0.54 -8.04 15.11 5.55 0.08 -7.96 16 6 N -0.72 -7.90 5.45 -60.29 -0.33 -8.23 16 7 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 8 C -0.12 -1.68 3.63 -89.80 -0.33 -2.01 16 9 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 10 C -0.17 -2.62 7.43 -25.91 -0.19 -2.82 16 11 C 0.17 3.14 4.56 -67.11 -0.31 2.83 16 12 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 13 N -0.71 -16.90 5.31 -52.64 -0.28 -17.18 16 14 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 17 N -0.93 -27.35 13.06 55.49 0.72 -26.62 16 18 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.15 -2.28 7.39 -25.91 -0.19 -2.47 16 23 C -0.11 -1.03 4.40 -104.55 -0.46 -1.49 16 24 C -0.03 -0.24 7.92 -39.60 -0.31 -0.56 16 25 C -0.16 -1.34 10.02 -39.51 -0.40 -1.74 16 26 C 0.13 1.14 7.30 -39.43 -0.29 0.86 16 27 F -0.13 -1.23 17.27 2.25 0.04 -1.20 16 28 C -0.19 -1.71 10.01 -39.45 -0.39 -2.11 16 29 C 0.14 1.32 7.24 -39.43 -0.29 1.04 16 30 F -0.13 -1.30 16.19 2.25 0.04 -1.27 16 31 H 0.07 0.44 7.39 -51.93 -0.38 0.05 16 32 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.40 3.77 7.89 -40.82 -0.32 3.45 16 35 H 0.07 0.85 7.84 -51.92 -0.41 0.45 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 39 H 0.38 9.76 7.90 -40.82 -0.32 9.44 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.14 1.15 7.51 -52.49 -0.39 0.75 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -31.12 383.24 -8.76 -39.88 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.35 Total: 9.60 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.44 Total: -9.61 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.12 Total: -52.03 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.08 Total: -7.96 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.08 Total: -2.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.12 -8.76 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707090359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.939 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds