Wall clock time and date at job start Tue Mar 31 2020 21:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47065 * 2 1 4 4 C 1.50698 * 109.47207 * 120.00989 * 2 1 3 5 5 O 1.21283 * 120.00472 * 119.99880 * 4 2 1 6 6 N 1.34777 * 119.99538 * 299.99218 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 C 1.53004 * 109.47198 * 180.27868 * 7 6 4 9 9 H 1.08996 * 112.84823 * 316.19572 * 8 7 6 10 10 C 1.53787 * 113.61355 * 87.50373 * 8 7 6 11 11 C 1.53783 * 87.08023 * 139.98452 * 10 8 7 12 12 H 1.08996 * 113.60854 * 220.01945 * 11 10 8 13 13 N 1.46499 * 113.61670 * 89.11251 * 11 10 8 14 14 C 1.36938 * 119.99690 * 107.50005 * 13 11 10 15 15 H 1.07998 * 120.00135 * 0.02562 * 14 13 11 16 16 C 1.38808 * 119.99915 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99885 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99960 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47164 * 90.00380 * 18 16 14 20 20 H 1.48508 * 109.46914 * 210.00062 * 18 16 14 21 21 H 1.48499 * 109.46984 * 329.99727 * 18 16 14 22 22 C 1.53782 * 113.61417 * 185.00090 * 8 7 6 23 23 C 1.50698 * 109.46679 * 240.00551 * 2 1 3 24 24 C 1.38231 * 119.98977 * 299.99797 * 23 2 1 25 25 C 1.38189 * 120.05161 * 179.97438 * 24 23 2 26 26 C 1.38490 * 120.02553 * 359.97438 * 25 24 23 27 27 F 1.35098 * 120.01487 * 180.02562 * 26 25 24 28 28 C 1.38401 * 119.97699 * 0.02761 * 26 25 24 29 29 C 1.38444 * 119.94313 * 359.70023 * 28 26 25 30 30 F 1.35104 * 120.00603 * 180.29609 * 29 28 26 31 31 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47038 * 299.99432 * 1 2 3 33 33 H 1.08995 * 109.47475 * 59.99036 * 1 2 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 35 35 H 1.09009 * 109.47454 * 300.27637 * 7 6 4 36 36 H 1.08998 * 109.47492 * 60.27932 * 7 6 4 37 37 H 1.08998 * 113.61128 * 254.53330 * 10 8 7 38 38 H 1.08998 * 113.61325 * 25.42994 * 10 8 7 39 39 H 0.96996 * 120.00346 * 287.50269 * 13 11 10 40 40 H 0.97008 * 119.99619 * 179.97438 * 17 16 14 41 41 H 1.09001 * 113.61616 * 334.56263 * 22 8 7 42 42 H 1.09000 * 113.61435 * 105.38746 * 22 8 7 43 43 H 1.08000 * 119.97331 * 0.02562 * 24 23 2 44 44 H 1.08001 * 119.98791 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.02546 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1190 6 7 1.7068 -0.2502 2.4545 7 6 2.1902 -0.9445 3.6505 8 6 1.6757 -0.2266 4.8999 9 1 1.7614 0.8578 4.8304 10 6 0.2900 -0.7087 5.3607 11 6 0.8197 -0.6050 6.8007 12 1 0.4952 -1.4220 7.4451 13 7 0.6186 0.7136 7.4065 14 6 -0.3259 0.8812 8.3837 15 1 -0.9223 0.0413 8.7081 16 6 -0.5162 2.1305 8.9581 17 7 0.2109 3.1540 8.5631 18 14 -1.8041 2.3589 10.2917 19 1 -1.1885 2.1165 11.6211 20 1 -2.3331 3.7455 10.2366 21 1 -2.9146 1.3966 10.0774 22 6 2.2270 -0.8051 6.2137 23 6 2.0322 -0.7103 -1.2305 24 6 1.6981 -2.0337 -1.4492 25 6 2.1575 -2.6861 -2.5774 26 6 2.9529 -2.0144 -3.4907 27 9 3.4014 -2.6523 -4.5939 28 6 3.2881 -0.6894 -3.2730 29 6 2.8226 -0.0352 -2.1451 30 9 3.1441 1.2599 -1.9343 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8898 34 1 1.1490 0.5383 2.5436 35 1 1.8264 -1.9720 3.6462 36 1 3.2802 -0.9450 3.6548 37 1 -0.5128 -0.0056 5.1391 38 1 0.0579 -1.7283 5.0531 39 1 1.1544 1.4680 7.1154 40 1 0.0777 4.0271 8.9643 41 1 2.5244 -1.8511 6.1395 42 1 2.9889 -0.1805 6.6801 43 1 1.0769 -2.5579 -0.7381 44 1 1.8955 -3.7200 -2.7474 45 1 3.9086 -0.1650 -3.9845 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707090359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:58 Heat of formation + Delta-G solvation = -96.577626 kcal Electronic energy + Delta-G solvation = -28218.802948 eV Core-core repulsion = 23872.043637 eV Total energy + Delta-G solvation = -4346.759310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.11241 -50.04111 -41.35114 -40.16299 -39.36750 -35.99335 -35.28048 -34.81156 -32.07431 -31.83135 -30.27506 -28.56831 -26.41298 -25.96191 -25.45172 -24.23195 -23.49297 -22.72872 -21.12810 -19.76687 -19.33461 -19.30772 -18.56431 -17.88788 -17.38344 -17.00858 -16.78064 -16.71132 -16.52218 -16.35904 -16.06289 -15.80012 -15.61601 -15.52132 -15.10070 -14.87323 -14.68916 -14.48248 -13.93052 -13.83478 -13.64201 -13.37413 -13.26230 -13.00497 -12.92431 -12.89534 -12.77259 -12.62632 -12.27896 -12.18146 -12.14302 -12.03907 -11.52096 -11.45527 -10.99363 -10.86901 -10.68527 -10.08837 -10.03303 -9.67849 -8.98453 -7.94524 -5.22488 -0.14177 -0.00435 1.48994 1.49938 1.58331 1.60177 2.08504 2.44361 2.56608 2.80343 3.26692 3.38245 3.40891 3.51140 3.71257 3.76455 3.81777 3.87315 3.97614 4.07892 4.12790 4.17803 4.26767 4.35281 4.43294 4.65473 4.74506 4.76412 4.80949 4.84970 4.85743 4.90559 4.95297 5.01722 5.03002 5.13556 5.20109 5.26206 5.31176 5.37754 5.50462 5.57412 5.68803 5.71370 6.29279 6.53849 7.20860 7.34381 8.12037 8.33915 9.28628 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025915 B = 0.001862 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.201761 B =15032.363649 C =15384.865568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.069 4.069 3 H 0.117 0.883 4 C 0.517 3.483 5 O -0.572 6.572 6 N -0.715 5.715 7 C 0.141 3.859 8 C -0.102 4.102 9 H 0.080 0.920 10 C -0.150 4.150 11 C 0.142 3.858 12 H 0.059 0.941 13 N -0.720 5.720 14 C -0.241 4.241 15 H 0.077 0.923 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.972 3.028 19 H -0.289 1.289 20 H -0.297 1.297 21 H -0.269 1.269 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.034 4.034 25 C -0.159 4.159 26 C 0.118 3.882 27 F -0.136 7.136 28 C -0.195 4.195 29 C 0.121 3.879 30 F -0.135 7.135 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.412 0.588 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.374 0.626 40 H 0.250 0.750 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.149 0.851 44 H 0.163 0.837 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -10.077 -25.280 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 H 0.135 0.865 4 C 0.304 3.696 5 O -0.451 6.451 6 N -0.366 5.366 7 C 0.018 3.982 8 C -0.121 4.121 9 H 0.099 0.901 10 C -0.191 4.191 11 C 0.032 3.968 12 H 0.077 0.923 13 N -0.358 5.358 14 C -0.373 4.373 15 H 0.095 0.905 16 C -0.268 4.268 17 N -0.619 5.619 18 Si 0.801 3.199 19 H -0.216 1.216 20 H -0.223 1.223 21 H -0.194 1.194 22 C -0.176 4.176 23 C -0.117 4.117 24 C -0.052 4.052 25 C -0.177 4.177 26 C 0.099 3.901 27 F -0.115 7.115 28 C -0.214 4.214 29 C 0.102 3.898 30 F -0.113 7.113 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.167 0.833 44 H 0.181 0.819 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.841 -10.787 -25.226 27.582 hybrid contribution -0.225 1.353 0.666 1.524 sum 2.616 -9.435 -24.560 26.440 Atomic orbital electron populations 1.21841 0.89368 1.03891 1.04499 1.20229 0.99720 1.00474 0.88617 0.86514 1.20711 0.79614 0.84197 0.85066 1.90700 1.39300 1.27904 1.87214 1.45984 1.53303 1.32202 1.05128 1.21291 0.98520 0.95939 0.82491 1.22487 0.97186 0.99490 0.92915 0.90126 1.23690 0.95812 1.00926 0.98637 1.21398 0.95279 0.87441 0.92650 0.92306 1.42299 1.43306 1.06471 1.43716 1.19666 1.11495 0.94491 1.11610 0.90547 1.25539 1.02410 0.95850 1.03015 1.69810 1.44598 1.00431 1.47083 0.85162 0.79029 0.76615 0.79085 1.21643 1.22340 1.19384 1.23360 0.97153 1.01839 0.95218 1.19582 1.00365 0.95728 0.96023 1.20826 0.96721 0.92175 0.95457 1.21429 0.99512 1.02498 0.94281 1.17414 0.97389 0.90445 0.84845 1.91522 1.87506 1.81606 1.50834 1.21107 1.05763 0.94772 0.99778 1.17196 0.98085 0.79033 0.95485 1.91504 1.91096 1.33986 1.94724 0.91255 0.90215 0.89872 0.75188 0.91094 0.92241 0.93158 0.88886 0.79369 0.94074 0.87709 0.92626 0.83319 0.81945 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.90 71.98 0.64 -0.95 16 2 C -0.07 -1.13 2.88 -12.29 -0.04 -1.16 16 3 H 0.12 1.77 7.12 -2.39 -0.02 1.75 16 4 C 0.52 11.25 7.02 87.66 0.62 11.86 16 5 O -0.57 -16.36 15.11 -3.04 -0.05 -16.41 16 6 N -0.71 -14.42 5.45 -463.05 -2.52 -16.94 16 7 C 0.14 3.22 5.51 86.38 0.48 3.70 16 8 C -0.10 -2.70 3.63 -10.26 -0.04 -2.74 16 9 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 10 C -0.15 -4.42 7.43 31.12 0.23 -4.19 16 11 C 0.14 5.20 4.56 45.52 0.21 5.41 16 12 H 0.06 2.17 8.10 -2.39 -0.02 2.15 16 13 N -0.72 -34.64 5.31 -320.44 -1.70 -36.34 16 14 C -0.24 -12.96 9.97 84.03 0.84 -12.12 16 15 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 17 N -0.97 -57.85 13.06 21.65 0.28 -57.56 16 18 Si 0.97 45.10 29.55 68.60 2.03 47.12 16 19 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 20 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.14 -3.98 7.39 31.12 0.23 -3.75 16 23 C -0.12 -2.07 4.40 -19.82 -0.09 -2.16 16 24 C -0.03 -0.55 7.92 22.26 0.18 -0.37 16 25 C -0.16 -2.36 10.02 22.32 0.22 -2.14 16 26 C 0.12 1.98 7.30 22.37 0.16 2.14 16 27 F -0.14 -2.37 17.27 44.97 0.78 -1.60 16 28 C -0.19 -3.25 10.01 22.36 0.22 -3.03 16 29 C 0.12 2.25 7.24 22.37 0.16 2.41 16 30 F -0.13 -2.64 16.19 44.97 0.73 -1.91 16 31 H 0.07 0.76 7.39 -2.39 -0.02 0.75 16 32 H 0.08 0.81 7.56 -2.39 -0.02 0.79 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.41 6.96 7.89 -92.71 -0.73 6.23 16 35 H 0.07 1.61 7.84 -2.38 -0.02 1.59 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 2.30 7.90 -2.39 -0.02 2.28 16 39 H 0.37 19.34 7.90 -92.71 -0.73 18.61 16 40 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 41 H 0.10 2.50 8.10 -2.39 -0.02 2.48 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.15 2.16 7.51 -2.91 -0.02 2.14 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -66.73 383.24 3.61 -63.12 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.43 Total: 31.39 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.49 Total: -10.87 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -3.94 Total: -110.85 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.05 Total: -16.41 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 1.50 Total: -3.51 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -66.73 3.61 -63.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707090359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.456 kcal (2) G-P(sol) polarization free energy of solvation -66.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds