Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47159 * 2 1 4 4 C 1.53005 * 109.47059 * 119.99784 * 2 1 3 5 5 C 1.50696 * 109.46916 * 295.00153 * 4 2 1 6 6 C 1.38239 * 120.00649 * 264.72063 * 5 4 2 7 7 C 1.38222 * 120.01359 * 179.76853 * 6 5 4 8 8 C 1.38267 * 120.02408 * 0.51141 * 7 6 5 9 9 C 1.38196 * 120.01463 * 359.74618 * 8 7 6 10 10 C 1.38328 * 120.01038 * 84.99969 * 5 4 2 11 11 Cl 1.73609 * 120.00897 * 359.95500 * 10 5 4 12 12 C 1.50701 * 109.47553 * 239.99775 * 2 1 3 13 13 O 1.21282 * 120.00060 * 240.00198 * 12 2 1 14 14 N 1.34777 * 119.99840 * 59.72435 * 12 2 1 15 15 C 1.46499 * 120.00274 * 180.27571 * 14 12 2 16 16 C 1.52994 * 109.47455 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47359 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47265 * 180.02562 * 17 16 15 19 19 C 1.46502 * 120.00270 * 89.99926 * 18 17 16 20 20 C 1.36944 * 119.99783 * 269.99702 * 18 17 16 21 21 H 1.08000 * 119.99804 * 23.04922 * 20 18 17 22 22 C 1.38810 * 120.00044 * 203.04539 * 20 18 17 23 23 N 1.31617 * 119.99860 * 12.92964 * 22 20 18 24 24 Si 1.86797 * 119.99994 * 192.93102 * 22 20 18 25 25 H 1.48501 * 109.47109 * 90.00357 * 24 22 20 26 26 H 1.48504 * 109.47062 * 209.99704 * 24 22 20 27 27 H 1.48500 * 109.47299 * 329.99959 * 24 22 20 28 28 H 1.09000 * 109.47254 * 300.00386 * 1 2 3 29 29 H 1.09000 * 109.47135 * 60.00048 * 1 2 3 30 30 H 1.09007 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46906 * 55.00028 * 4 2 1 32 32 H 1.09001 * 109.46989 * 175.00451 * 4 2 1 33 33 H 1.07999 * 119.99258 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.98642 * 180.23021 * 7 6 5 35 35 H 1.08004 * 119.99197 * 179.76499 * 8 7 6 36 36 H 1.08001 * 120.00754 * 180.02562 * 9 8 7 37 37 H 0.97009 * 119.99993 * 0.27599 * 14 12 2 38 38 H 1.08998 * 109.46800 * 300.00407 * 15 14 12 39 39 H 1.09004 * 109.46807 * 60.00151 * 15 14 12 40 40 H 1.09011 * 109.46951 * 300.00418 * 16 15 14 41 41 H 1.08996 * 109.47202 * 59.99928 * 16 15 14 42 42 H 1.08997 * 109.47014 * 299.99844 * 17 16 15 43 43 H 1.09004 * 109.47080 * 60.00018 * 17 16 15 44 44 H 1.08992 * 109.46950 * 95.11977 * 19 18 17 45 45 H 1.09004 * 109.47094 * 215.12463 * 19 18 17 46 46 H 1.09001 * 109.46412 * 335.12129 * 19 18 17 47 47 H 0.96998 * 120.00144 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 6 2.5261 0.9554 3.0433 7 6 2.1587 1.6729 4.1661 8 6 0.9101 1.4849 4.7294 9 6 0.0266 0.5833 4.1669 10 6 0.3919 -0.1313 3.0397 11 17 -0.7177 -1.2636 2.3321 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7023 -0.2533 -2.4545 15 6 2.1857 -0.9474 -3.6507 16 6 1.6717 -0.2291 -4.8999 17 6 2.1760 -0.9543 -6.1491 18 7 1.6844 -0.2662 -7.3453 19 6 2.4755 0.8089 -7.9492 20 6 0.4852 -0.6278 -7.8990 21 1 -0.2606 -1.1236 -7.2954 22 6 0.2284 -0.3572 -9.2361 23 7 1.2094 0.0085 -10.0337 24 14 -1.5095 -0.5122 -9.9033 25 1 -2.2117 0.7887 -9.7621 26 1 -1.4569 -0.8931 -11.3376 27 1 -2.2414 -1.5552 -9.1406 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7994 1.2057 33 1 3.5031 1.0996 2.6061 34 1 2.8490 2.3772 4.6063 35 1 0.6250 2.0430 5.6090 36 1 -0.9489 0.4369 4.6067 37 1 1.1445 0.5354 -2.5436 38 1 3.2756 -0.9478 -3.6548 39 1 1.8219 -1.9749 -3.6464 40 1 0.5816 -0.2282 -4.8959 41 1 2.0358 0.7983 -4.9040 42 1 3.2660 -0.9555 -6.1533 43 1 1.8115 -1.9816 -6.1449 44 1 3.0868 0.4018 -8.7544 45 1 1.8069 1.5708 -8.3500 46 1 3.1212 1.2540 -7.1921 47 1 1.0300 0.1973 -10.9681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707410958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = -10.160093 kcal Electronic energy + Delta-G solvation = -26037.716637 eV Core-core repulsion = 22246.501353 eV Total energy + Delta-G solvation = -3791.215285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38150 -39.44826 -36.81995 -36.33331 -35.22840 -34.72882 -32.16561 -31.40047 -31.00611 -29.76924 -27.06853 -26.01796 -25.53615 -23.84763 -23.01738 -22.03178 -21.35107 -20.50982 -19.59584 -17.62730 -16.98112 -16.71997 -16.22142 -15.98859 -15.60201 -15.52443 -14.92574 -14.58427 -14.48419 -14.28776 -13.94160 -13.59251 -13.32223 -13.15491 -12.96947 -12.76418 -12.61928 -12.50419 -12.03559 -11.85621 -11.79403 -11.65765 -11.42621 -11.30774 -11.22915 -11.00370 -10.80009 -10.77999 -10.60382 -10.47075 -10.19267 -9.86905 -9.79479 -9.72363 -9.31664 -9.02046 -8.94160 -8.53812 -6.73182 -5.71029 -3.18269 0.71852 0.82090 1.79274 2.66381 3.11407 3.30659 3.38504 3.44699 3.46170 4.26932 4.33837 4.50509 4.53044 4.56309 4.70424 4.79720 4.88809 4.94930 5.13425 5.22664 5.27366 5.38358 5.44104 5.46715 5.50060 5.53990 5.61638 5.79353 5.82990 5.89729 5.91731 5.94508 5.98031 6.08283 6.11820 6.20885 6.36449 6.42507 6.59611 6.75356 6.77543 6.94836 7.38134 7.56268 7.74270 7.81658 8.25819 8.41529 9.25257 9.88829 10.37928 11.33761 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.001880 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.612684 B =14893.634952 C =15509.159213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.067 4.067 5 C -0.068 4.068 6 C -0.105 4.105 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.110 4.110 10 C -0.034 4.034 11 Cl -0.062 7.062 12 C 0.515 3.485 13 O -0.544 6.544 14 N -0.725 5.725 15 C 0.120 3.880 16 C -0.150 4.150 17 C 0.155 3.845 18 N -0.603 5.603 19 C 0.162 3.838 20 C -0.254 4.254 21 H 0.068 0.932 22 C 0.000 4.000 23 N -0.908 5.908 24 Si 0.905 3.095 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.400 0.600 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.049 0.951 44 H 0.031 0.969 45 H 0.039 0.961 46 H -0.003 1.003 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 4.543 31.101 31.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 H 0.115 0.885 4 C -0.105 4.105 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.061 4.061 11 Cl -0.033 7.033 12 C 0.301 3.699 13 O -0.422 6.422 14 N -0.376 5.376 15 C -0.004 4.004 16 C -0.191 4.191 17 C 0.027 3.973 18 N -0.326 5.326 19 C 0.018 3.982 20 C -0.384 4.384 21 H 0.086 0.914 22 C -0.198 4.198 23 N -0.553 5.553 24 Si 0.735 3.265 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.234 0.766 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.016 0.984 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.561 3.753 30.869 31.102 hybrid contribution -1.356 0.381 -0.568 1.519 sum -0.795 4.134 30.301 30.592 Atomic orbital electron populations 1.22249 0.92639 1.03225 1.02740 1.21249 0.97967 1.00644 0.92504 0.88530 1.20482 1.02531 0.98625 0.88855 1.19812 0.92259 0.97544 0.97257 1.21105 0.99548 0.95589 0.96063 1.21272 0.96613 0.99293 0.95948 1.21125 0.93805 0.98140 1.00172 1.21080 1.00623 0.96365 0.94777 1.20876 0.91984 0.96425 0.96785 1.98384 1.61834 1.60088 1.82959 1.20529 0.80116 0.84625 0.84674 1.90695 1.38199 1.26359 1.86914 1.46156 1.53454 1.32085 1.05902 1.21455 0.99081 0.96505 0.83349 1.22524 1.01795 1.00213 0.94558 1.20597 0.96068 0.94836 0.85798 1.43898 1.22073 1.38175 1.28439 1.20787 0.93744 0.90059 0.93626 1.19190 0.91330 1.35644 0.92236 0.91439 1.25042 0.97504 1.01456 0.95815 1.70070 1.29517 1.51195 1.04534 0.86250 0.84369 0.77796 0.78099 1.21548 1.21750 1.20486 0.91098 0.92275 0.91450 0.89413 0.89558 0.84963 0.85372 0.85199 0.84979 0.76601 0.91835 0.91678 0.91585 0.92270 0.94436 0.93290 0.95086 0.94187 0.98436 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.32 37.15 0.27 -1.07 16 2 C -0.10 -0.97 2.71 -91.77 -0.25 -1.22 16 3 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.07 -0.64 3.97 -27.88 -0.11 -0.75 16 5 C -0.07 -0.56 4.86 -104.59 -0.51 -1.07 16 6 C -0.10 -0.73 9.68 -39.59 -0.38 -1.11 16 7 C -0.11 -0.66 10.05 -39.58 -0.40 -1.06 16 8 C -0.11 -0.66 10.05 -39.59 -0.40 -1.06 16 9 C -0.11 -0.75 9.83 -39.55 -0.39 -1.14 16 10 C -0.03 -0.28 5.18 -39.50 -0.20 -0.49 16 11 Cl -0.06 -0.54 23.12 -51.86 -1.20 -1.74 16 12 C 0.51 6.64 7.16 -10.98 -0.08 6.56 16 13 O -0.54 -9.04 15.92 5.56 0.09 -8.95 16 14 N -0.73 -8.96 5.44 -60.30 -0.33 -9.29 16 15 C 0.12 1.74 5.67 -4.05 -0.02 1.71 16 16 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 17 C 0.16 3.14 5.64 -4.04 -0.02 3.12 16 18 N -0.60 -15.19 2.92 -181.12 -0.53 -15.72 16 19 C 0.16 4.02 8.98 59.85 0.54 4.56 16 20 C -0.25 -7.00 9.65 -15.06 -0.15 -7.14 16 21 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 22 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 23 N -0.91 -26.73 10.71 55.49 0.59 -26.13 16 24 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H 0.07 0.59 5.29 -51.93 -0.27 0.32 16 29 H 0.06 0.48 7.55 -51.93 -0.39 0.09 16 30 H 0.07 0.67 6.73 -51.93 -0.35 0.32 16 31 H 0.09 0.95 7.13 -51.93 -0.37 0.58 16 32 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 33 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 35 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.40 4.09 7.88 -40.82 -0.32 3.77 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 43 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 44 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 45 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 46 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -32.38 390.90 -10.34 -42.72 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -7.49 Total: -0.81 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.34 Total: -2.88 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.26 Total: -51.14 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.20 Total: -1.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.38 -10.34 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707410958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.556 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds