Wall clock time and date at job start Tue Mar 31 2020 20:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.47159 * 2 1 4 4 C 1.53005 * 109.47059 * 119.99784 * 2 1 3 5 5 C 1.50696 * 109.46916 * 295.00153 * 4 2 1 6 6 C 1.38239 * 120.00649 * 264.72063 * 5 4 2 7 7 C 1.38222 * 120.01359 * 179.76853 * 6 5 4 8 8 C 1.38267 * 120.02408 * 0.51141 * 7 6 5 9 9 C 1.38196 * 120.01463 * 359.74618 * 8 7 6 10 10 C 1.38328 * 120.01038 * 84.99969 * 5 4 2 11 11 Cl 1.73609 * 120.00897 * 359.95500 * 10 5 4 12 12 C 1.50701 * 109.47553 * 239.99775 * 2 1 3 13 13 O 1.21282 * 120.00060 * 240.00198 * 12 2 1 14 14 N 1.34777 * 119.99840 * 59.72435 * 12 2 1 15 15 C 1.46499 * 120.00274 * 180.27571 * 14 12 2 16 16 C 1.52994 * 109.47455 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47359 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47265 * 180.02562 * 17 16 15 19 19 C 1.46502 * 120.00270 * 89.99926 * 18 17 16 20 20 C 1.36944 * 119.99783 * 269.99702 * 18 17 16 21 21 H 1.08000 * 119.99804 * 23.04922 * 20 18 17 22 22 C 1.38810 * 120.00044 * 203.04539 * 20 18 17 23 23 N 1.31617 * 119.99860 * 12.92964 * 22 20 18 24 24 Si 1.86797 * 119.99994 * 192.93102 * 22 20 18 25 25 H 1.48501 * 109.47109 * 90.00357 * 24 22 20 26 26 H 1.48504 * 109.47062 * 209.99704 * 24 22 20 27 27 H 1.48500 * 109.47299 * 329.99959 * 24 22 20 28 28 H 1.09000 * 109.47254 * 300.00386 * 1 2 3 29 29 H 1.09000 * 109.47135 * 60.00048 * 1 2 3 30 30 H 1.09007 * 109.47159 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46906 * 55.00028 * 4 2 1 32 32 H 1.09001 * 109.46989 * 175.00451 * 4 2 1 33 33 H 1.07999 * 119.99258 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.98642 * 180.23021 * 7 6 5 35 35 H 1.08004 * 119.99197 * 179.76499 * 8 7 6 36 36 H 1.08001 * 120.00754 * 180.02562 * 9 8 7 37 37 H 0.97009 * 119.99993 * 0.27599 * 14 12 2 38 38 H 1.08998 * 109.46800 * 300.00407 * 15 14 12 39 39 H 1.09004 * 109.46807 * 60.00151 * 15 14 12 40 40 H 1.09011 * 109.46951 * 300.00418 * 16 15 14 41 41 H 1.08996 * 109.47202 * 59.99928 * 16 15 14 42 42 H 1.08997 * 109.47014 * 299.99844 * 17 16 15 43 43 H 1.09004 * 109.47080 * 60.00018 * 17 16 15 44 44 H 1.08992 * 109.46950 * 95.11977 * 19 18 17 45 45 H 1.09004 * 109.47094 * 215.12463 * 19 18 17 46 46 H 1.09001 * 109.46412 * 335.12129 * 19 18 17 47 47 H 0.96998 * 120.00144 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 6 2.5261 0.9554 3.0433 7 6 2.1587 1.6729 4.1661 8 6 0.9101 1.4849 4.7294 9 6 0.0266 0.5833 4.1669 10 6 0.3919 -0.1313 3.0397 11 17 -0.7177 -1.2636 2.3321 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7023 -0.2533 -2.4545 15 6 2.1857 -0.9474 -3.6507 16 6 1.6717 -0.2291 -4.8999 17 6 2.1760 -0.9543 -6.1491 18 7 1.6844 -0.2662 -7.3453 19 6 2.4755 0.8089 -7.9492 20 6 0.4852 -0.6278 -7.8990 21 1 -0.2606 -1.1236 -7.2954 22 6 0.2284 -0.3572 -9.2361 23 7 1.2094 0.0085 -10.0337 24 14 -1.5095 -0.5122 -9.9033 25 1 -2.2117 0.7887 -9.7621 26 1 -1.4569 -0.8931 -11.3376 27 1 -2.2414 -1.5552 -9.1406 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -1.7197 1.2952 32 1 3.1263 -0.7994 1.2057 33 1 3.5031 1.0996 2.6061 34 1 2.8490 2.3772 4.6063 35 1 0.6250 2.0430 5.6090 36 1 -0.9489 0.4369 4.6067 37 1 1.1445 0.5354 -2.5436 38 1 3.2756 -0.9478 -3.6548 39 1 1.8219 -1.9749 -3.6464 40 1 0.5816 -0.2282 -4.8959 41 1 2.0358 0.7983 -4.9040 42 1 3.2660 -0.9555 -6.1533 43 1 1.8115 -1.9816 -6.1449 44 1 3.0868 0.4018 -8.7544 45 1 1.8069 1.5708 -8.3500 46 1 3.1212 1.2540 -7.1921 47 1 1.0300 0.1973 -10.9681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707410958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:26 Heat of formation + Delta-G solvation = -27.876738 kcal Electronic energy + Delta-G solvation = -26038.484889 eV Core-core repulsion = 22246.501353 eV Total energy + Delta-G solvation = -3791.983536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21188 -40.20370 -37.98830 -37.41349 -36.26598 -35.92790 -33.79139 -32.29067 -31.64903 -31.17355 -27.96110 -27.73830 -27.11789 -24.86519 -23.59668 -23.34687 -22.22099 -21.99147 -20.66344 -18.72579 -18.34744 -17.70835 -17.24969 -16.88189 -16.70289 -16.55050 -16.15335 -15.79281 -15.48880 -15.16640 -15.04834 -14.76222 -14.59394 -14.50466 -14.21188 -13.81653 -13.48544 -13.30804 -13.24533 -13.03725 -12.80229 -12.66303 -12.64250 -12.49319 -12.44323 -12.38611 -12.28147 -12.09041 -11.93097 -11.89821 -11.83617 -11.48202 -11.25611 -10.81209 -10.61893 -10.07058 -9.83016 -9.57105 -8.77472 -7.82186 -5.31879 0.20658 0.32690 1.21367 1.46870 1.47401 1.56541 1.63461 2.19878 2.51738 2.70659 3.30833 3.55827 3.66407 3.76662 3.83076 4.01686 4.03493 4.12673 4.19959 4.28187 4.38863 4.42261 4.47100 4.49559 4.65925 4.69847 4.75701 4.80632 4.83855 4.86432 4.89930 4.95123 5.02143 5.16127 5.25281 5.27502 5.29702 5.32920 5.46256 5.48697 5.51415 5.53037 5.63984 5.71953 5.90769 6.33634 6.56463 7.15913 7.24572 7.88127 8.31721 9.20892 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.001880 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.612684 B =14893.634952 C =15509.159213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.119 0.881 4 C -0.062 4.062 5 C -0.081 4.081 6 C -0.111 4.111 7 C -0.112 4.112 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.048 4.048 11 Cl -0.076 7.076 12 C 0.514 3.486 13 O -0.584 6.584 14 N -0.717 5.717 15 C 0.131 3.869 16 C -0.127 4.127 17 C 0.150 3.850 18 N -0.621 5.621 19 C 0.176 3.824 20 C -0.260 4.260 21 H 0.071 0.929 22 C -0.058 4.058 23 N -0.941 5.941 24 Si 0.969 3.031 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.269 1.269 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.413 0.587 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.003 0.997 45 H 0.015 0.985 46 H 0.033 0.967 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 6.006 33.408 33.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.137 0.863 4 C -0.100 4.100 5 C -0.082 4.082 6 C -0.129 4.129 7 C -0.130 4.130 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.074 4.074 11 Cl -0.047 7.047 12 C 0.302 3.698 13 O -0.465 6.465 14 N -0.369 5.369 15 C 0.007 3.993 16 C -0.167 4.167 17 C 0.023 3.977 18 N -0.344 5.344 19 C 0.031 3.969 20 C -0.390 4.390 21 H 0.089 0.911 22 C -0.252 4.252 23 N -0.588 5.588 24 Si 0.798 3.202 25 H -0.212 1.212 26 H -0.223 1.223 27 H -0.193 1.193 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.249 0.751 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.021 0.979 45 H 0.034 0.966 46 H 0.052 0.948 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.005 5.228 33.220 33.629 hybrid contribution -1.121 -0.081 -1.176 1.626 sum -1.115 5.147 32.044 32.474 Atomic orbital electron populations 1.22215 0.91991 1.02640 1.03569 1.21231 0.98271 1.01185 0.90618 0.86285 1.20361 1.01883 0.98011 0.89738 1.19735 0.92815 0.98404 0.97210 1.21313 0.99782 0.95313 0.96499 1.21602 0.97051 0.99080 0.95274 1.21480 0.93433 0.97471 1.00578 1.21313 1.01513 0.96384 0.94378 1.21014 0.91948 0.96844 0.97616 1.98377 1.62295 1.60751 1.83268 1.21113 0.79210 0.84075 0.85445 1.90679 1.40082 1.28231 1.87462 1.46028 1.53365 1.32291 1.05217 1.21163 0.98898 0.95863 0.83410 1.22149 1.01097 1.00082 0.93415 1.20779 0.96822 0.94587 0.85492 1.44160 1.21765 1.38798 1.29713 1.20541 0.93149 0.89384 0.93838 1.19517 0.92357 1.34719 0.92415 0.91120 1.25833 1.01114 1.02007 0.96287 1.70237 1.31315 1.52746 1.04469 0.85230 0.80094 0.77940 0.76973 1.21152 1.22301 1.19337 0.90346 0.91299 0.92795 0.91335 0.90236 0.83855 0.82933 0.82671 0.83885 0.75075 0.91905 0.92718 0.92288 0.91529 0.93252 0.93977 0.97895 0.96647 0.94839 0.94312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 7.32 71.98 0.53 -1.91 16 2 C -0.09 -1.63 2.71 -11.54 -0.03 -1.67 16 3 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.06 -1.17 3.97 29.85 0.12 -1.05 16 5 C -0.08 -1.25 4.86 -19.84 -0.10 -1.35 16 6 C -0.11 -1.31 9.68 22.27 0.22 -1.10 16 7 C -0.11 -0.98 10.05 22.27 0.22 -0.76 16 8 C -0.11 -0.97 10.05 22.27 0.22 -0.74 16 9 C -0.12 -1.39 9.83 22.29 0.22 -1.17 16 10 C -0.05 -0.74 5.18 22.32 0.12 -0.63 16 11 Cl -0.08 -1.32 23.12 -2.72 -0.06 -1.39 16 12 C 0.51 12.81 7.16 87.66 0.63 13.44 16 13 O -0.58 -19.42 15.92 -3.04 -0.05 -19.47 16 14 N -0.72 -16.62 5.44 -463.07 -2.52 -19.14 16 15 C 0.13 3.64 5.67 86.38 0.49 4.13 16 16 C -0.13 -3.97 5.65 30.59 0.17 -3.80 16 17 C 0.15 5.92 5.64 86.38 0.49 6.41 16 18 N -0.62 -31.04 2.92 -726.93 -2.12 -33.16 16 19 C 0.18 8.69 8.98 127.77 1.15 9.84 16 20 C -0.26 -14.25 9.65 84.03 0.81 -13.44 16 21 H 0.07 3.75 7.86 -2.91 -0.02 3.73 16 22 C -0.06 -3.25 5.10 84.86 0.43 -2.82 16 23 N -0.94 -56.29 10.71 21.65 0.23 -56.06 16 24 Si 0.97 45.25 29.57 68.60 2.03 47.27 16 25 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H 0.08 1.21 5.29 -2.39 -0.01 1.20 16 29 H 0.07 0.99 7.55 -2.39 -0.02 0.97 16 30 H 0.05 1.05 6.73 -2.38 -0.02 1.03 16 31 H 0.07 1.53 7.13 -2.39 -0.02 1.52 16 32 H 0.08 1.56 7.86 -2.39 -0.02 1.54 16 33 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 37 H 0.41 7.49 7.88 -92.70 -0.73 6.76 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.83 8.07 -2.39 -0.02 1.81 16 43 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 44 H 0.00 0.15 7.34 -2.39 -0.02 0.13 16 45 H 0.01 0.80 7.34 -2.38 -0.02 0.78 16 46 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -70.17 390.90 3.42 -66.75 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.23 Total: 11.81 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 5.68 Total: 3.38 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -4.41 Total: -108.36 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.47 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.06 Total: -1.39 kcal Total: -70.17 3.42 -66.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707410958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.871 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds