Wall clock time and date at job start Tue Mar 31 2020 21:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47061 * 2 1 4 4 C 1.53007 * 109.46588 * 240.00387 * 2 1 3 5 5 N 1.46500 * 109.47293 * 64.99825 * 4 2 1 6 6 C 1.36932 * 119.99910 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00311 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00106 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99818 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00168 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47396 * 59.99645 * 10 8 6 12 12 H 1.48503 * 109.47436 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47394 * 299.99566 * 10 8 6 14 14 C 1.52991 * 109.47377 * 120.00419 * 2 1 3 15 15 N 1.46501 * 109.47056 * 294.99469 * 14 2 1 16 16 C 1.34779 * 120.00300 * 179.97438 * 15 14 2 17 17 O 1.21287 * 119.99520 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00223 * 180.02562 * 16 15 14 19 19 C 1.52996 * 109.54489 * 300.18001 * 18 16 15 20 20 F 1.39902 * 109.47169 * 299.82644 * 19 18 16 21 21 F 1.39903 * 109.47293 * 59.82195 * 19 18 16 22 22 F 1.39896 * 109.47653 * 179.82332 * 19 18 16 23 23 C 1.53207 * 109.54219 * 60.44266 * 18 16 15 24 24 C 1.53092 * 109.14859 * 62.89272 * 23 18 16 25 25 O 1.42905 * 109.42428 * 57.60656 * 24 23 18 26 26 C 1.42898 * 114.09851 * 298.83405 * 25 24 23 27 27 C 1.53097 * 109.41490 * 61.15689 * 26 25 24 28 28 H 1.09001 * 109.47080 * 299.99345 * 1 2 3 29 29 H 1.08997 * 109.47691 * 59.99814 * 1 2 3 30 30 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46786 * 184.99787 * 4 2 1 32 32 H 1.09000 * 109.46810 * 304.99416 * 4 2 1 33 33 H 0.97004 * 119.99687 * 359.97438 * 5 4 2 34 34 H 0.96995 * 119.99680 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47041 * 174.99873 * 14 2 1 36 36 H 1.08993 * 109.47498 * 54.99849 * 14 2 1 37 37 H 0.96997 * 119.99945 * 0.02562 * 15 14 2 38 38 H 1.08999 * 109.53319 * 302.98790 * 23 18 16 39 39 H 1.08992 * 109.51748 * 182.79007 * 23 18 16 40 40 H 1.09002 * 109.48343 * 297.61643 * 24 23 18 41 41 H 1.08999 * 109.47546 * 177.59237 * 24 23 18 42 42 H 1.08995 * 109.48500 * 181.13987 * 26 25 24 43 43 H 1.09000 * 109.47974 * 301.16817 * 26 25 24 44 44 H 1.09003 * 109.51867 * 62.29966 * 27 26 25 45 45 H 1.09005 * 109.52093 * 182.41951 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.6523 0.0354 -2.4425 6 6 2.0017 -0.4201 -3.6856 7 1 2.5634 -1.3370 -3.7866 8 6 1.6349 0.2971 -4.8161 9 7 0.9507 1.4148 -4.6931 10 14 2.1121 -0.3240 -6.5119 11 1 1.5197 -1.6679 -6.7317 12 1 1.6043 0.6151 -7.5441 13 1 3.5913 -0.4134 -6.6082 14 6 2.0401 -0.7213 1.2491 15 7 1.6526 0.0353 2.4423 16 6 1.9958 -0.4137 3.6659 17 8 2.6258 -1.4439 3.7791 18 6 1.5968 0.3643 4.8932 19 6 2.2023 1.7678 4.8289 20 9 3.5970 1.6720 4.7756 21 9 1.7361 2.4250 3.6852 22 9 1.8277 2.4901 5.9670 23 6 0.0696 0.4657 4.9616 24 6 -0.5212 -0.9394 5.1040 25 8 0.0173 -1.5654 6.2703 26 6 1.4365 -1.7300 6.2416 27 6 2.1062 -0.3567 6.1450 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7994 -1.2058 32 1 1.6053 -1.7198 -1.2952 33 1 1.1481 0.8592 -2.3517 34 1 0.6941 1.9157 -5.4830 35 1 3.1264 -0.7995 1.2054 36 1 1.6055 -1.7198 1.2950 37 1 1.1485 0.8590 2.3517 38 1 -0.3062 0.9281 4.0489 39 1 -0.2170 1.0703 5.8221 40 1 -0.2681 -1.5310 4.2242 41 1 -1.6051 -0.8703 5.1961 42 1 1.7630 -2.2303 7.1533 43 1 1.7152 -2.3321 5.3768 44 1 1.8607 0.2313 7.0294 45 1 3.1871 -0.4823 6.0797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714391096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:40 Heat of formation + Delta-G solvation = -233.319822 kcal Electronic energy + Delta-G solvation = -31506.398490 eV Core-core repulsion = 26722.940369 eV Total energy + Delta-G solvation = -4783.458122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.62302 -48.10909 -48.03474 -41.19328 -38.72929 -36.96463 -34.94428 -34.50552 -32.61023 -31.56185 -30.09594 -28.11503 -26.70391 -25.51882 -24.25800 -23.94313 -22.89853 -21.94811 -20.59403 -19.69608 -18.84530 -18.79086 -18.60094 -17.31350 -16.88303 -16.45486 -16.38533 -15.67861 -15.53259 -15.16558 -15.03945 -14.95023 -14.61198 -14.47073 -14.40477 -14.25713 -14.17438 -14.09452 -13.96440 -13.67347 -13.18326 -12.90988 -12.82970 -12.76723 -12.47760 -12.35011 -12.12410 -11.87910 -11.42497 -11.12493 -11.04672 -10.94427 -10.76035 -10.65112 -10.51056 -10.32742 -10.08441 -9.84639 -9.69827 -9.27558 -8.90159 -6.95746 -5.79584 -3.08325 1.77121 2.41240 2.60558 3.20578 3.33777 3.42851 3.47228 3.47874 3.48165 3.57606 4.05289 4.07134 4.25140 4.39004 4.56271 4.71859 4.81247 4.92828 4.96168 4.99125 5.11338 5.20342 5.26655 5.29452 5.38300 5.50278 5.54496 5.61904 5.70719 5.85070 5.86698 6.01017 6.13445 6.25586 6.33555 6.58734 6.70843 6.76194 6.79802 7.11930 7.67367 7.75970 8.39424 9.50699 10.07345 10.42083 11.43304 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002571 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.563455 B =10886.026740 C =11340.254258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 H 0.078 0.922 4 C 0.162 3.838 5 N -0.730 5.730 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.013 4.013 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.125 3.875 15 N -0.714 5.714 16 C 0.521 3.479 17 O -0.514 6.514 18 C -0.129 4.129 19 C 0.465 3.535 20 F -0.172 7.172 21 F -0.175 7.175 22 F -0.172 7.172 23 C -0.150 4.150 24 C 0.064 3.936 25 O -0.378 6.378 26 C 0.054 3.946 27 C -0.134 4.134 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.911 -0.725 26.061 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.096 0.904 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.002 3.998 15 N -0.367 5.367 16 C 0.303 3.697 17 O -0.389 6.389 18 C -0.134 4.134 19 C 0.410 3.590 20 F -0.153 7.153 21 F -0.156 7.156 22 F -0.154 7.154 23 C -0.188 4.188 24 C -0.013 4.013 25 O -0.297 6.297 26 C -0.022 4.022 27 C -0.172 4.172 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.241 0.759 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.483 -1.594 26.115 26.206 hybrid contribution 0.201 0.976 -1.305 1.642 sum -1.282 -0.618 24.810 24.851 Atomic orbital electron populations 1.21800 0.94562 1.01991 1.01571 1.21574 0.96818 1.00653 0.94056 0.90377 1.20561 0.96637 0.94176 0.85291 1.42320 1.66933 1.27706 1.00545 1.19188 1.28865 1.05514 0.83644 0.91192 1.24737 1.00945 0.97362 0.97878 1.69645 1.43420 1.16565 1.28665 0.86251 0.78043 0.77707 0.84083 1.21248 1.21682 1.21247 1.21538 1.00549 0.95243 0.82482 1.46250 1.56728 1.28019 1.05696 1.19600 0.80217 0.86102 0.83740 1.90700 1.38706 1.23649 1.85888 1.22330 1.00198 0.91499 0.99331 1.20091 0.76857 0.88033 0.73971 1.93238 1.29727 1.96337 1.96018 1.93164 1.88388 1.83166 1.50920 1.93197 1.91132 1.80021 1.51014 1.22403 0.89472 1.01362 1.05552 1.22543 0.99236 0.90353 0.89158 1.87948 1.21395 1.80017 1.40297 1.22829 0.80072 0.94807 1.04498 1.22149 1.02817 0.98356 0.93854 0.94059 0.90942 0.92682 0.96105 0.95956 0.78186 0.93443 0.90864 0.90832 0.75890 0.88917 0.88219 0.92477 0.87429 0.87995 0.89982 0.89097 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.94 37.16 0.33 -1.64 16 2 C -0.11 -1.65 2.46 -90.62 -0.22 -1.87 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.11 5.65 -4.04 -0.02 3.08 16 5 N -0.73 -17.98 5.33 -59.90 -0.32 -18.30 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 10 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.12 1.60 5.06 -4.05 -0.02 1.58 16 15 N -0.71 -7.88 4.85 -60.30 -0.29 -8.17 16 16 C 0.52 5.92 4.89 -10.99 -0.05 5.87 16 17 O -0.51 -7.14 13.84 5.55 0.08 -7.06 16 18 C -0.13 -1.16 0.25 -155.47 -0.04 -1.20 16 19 C 0.47 4.48 2.22 37.16 0.08 4.56 16 20 F -0.17 -1.92 16.58 2.25 0.04 -1.89 16 21 F -0.18 -1.73 14.65 2.25 0.03 -1.70 16 22 F -0.17 -1.56 16.18 2.25 0.04 -1.52 16 23 C -0.15 -1.07 4.61 -26.58 -0.12 -1.19 16 24 C 0.06 0.50 6.61 37.20 0.25 0.74 16 25 O -0.38 -3.58 10.77 -35.23 -0.38 -3.96 16 26 C 0.05 0.48 6.55 37.21 0.24 0.72 16 27 C -0.13 -1.12 4.31 -26.59 -0.11 -1.23 16 28 H 0.04 0.45 7.18 -51.93 -0.37 0.08 16 29 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 3.95 5.23 -40.82 -0.21 3.74 16 38 H 0.09 0.56 7.30 -51.93 -0.38 0.18 16 39 H 0.10 0.62 7.72 -51.93 -0.40 0.22 16 40 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.87 5.80 -51.93 -0.30 0.57 16 44 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 45 H 0.10 0.83 7.79 -51.93 -0.40 0.43 16 LS Contribution 364.63 15.07 5.49 5.49 Total: -1.00 -31.49 364.63 -5.99 -37.48 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.44 Total: 7.43 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 0.06 Total: 2.12 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.11 Total: -53.65 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: -0.30 Total: -11.03 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.49 -5.99 -37.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714391096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.840 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds