Wall clock time and date at job start Tue Mar 31 2020 21:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47061 * 2 1 4 4 C 1.53007 * 109.46588 * 240.00387 * 2 1 3 5 5 N 1.46500 * 109.47293 * 64.99825 * 4 2 1 6 6 C 1.36932 * 119.99910 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00311 * 359.97438 * 6 5 4 8 8 C 1.38816 * 120.00106 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99818 * 359.97438 * 8 6 5 10 10 Si 1.86793 * 120.00168 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47396 * 59.99645 * 10 8 6 12 12 H 1.48503 * 109.47436 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47394 * 299.99566 * 10 8 6 14 14 C 1.52991 * 109.47377 * 120.00419 * 2 1 3 15 15 N 1.46501 * 109.47056 * 294.99469 * 14 2 1 16 16 C 1.34779 * 120.00300 * 179.97438 * 15 14 2 17 17 O 1.21287 * 119.99520 * 0.02562 * 16 15 14 18 18 C 1.50693 * 120.00223 * 180.02562 * 16 15 14 19 19 C 1.52996 * 109.54489 * 300.18001 * 18 16 15 20 20 F 1.39902 * 109.47169 * 299.82644 * 19 18 16 21 21 F 1.39903 * 109.47293 * 59.82195 * 19 18 16 22 22 F 1.39896 * 109.47653 * 179.82332 * 19 18 16 23 23 C 1.53207 * 109.54219 * 60.44266 * 18 16 15 24 24 C 1.53092 * 109.14859 * 62.89272 * 23 18 16 25 25 O 1.42905 * 109.42428 * 57.60656 * 24 23 18 26 26 C 1.42898 * 114.09851 * 298.83405 * 25 24 23 27 27 C 1.53097 * 109.41490 * 61.15689 * 26 25 24 28 28 H 1.09001 * 109.47080 * 299.99345 * 1 2 3 29 29 H 1.08997 * 109.47691 * 59.99814 * 1 2 3 30 30 H 1.09001 * 109.47061 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46786 * 184.99787 * 4 2 1 32 32 H 1.09000 * 109.46810 * 304.99416 * 4 2 1 33 33 H 0.97004 * 119.99687 * 359.97438 * 5 4 2 34 34 H 0.96995 * 119.99680 * 180.02562 * 9 8 6 35 35 H 1.09002 * 109.47041 * 174.99873 * 14 2 1 36 36 H 1.08993 * 109.47498 * 54.99849 * 14 2 1 37 37 H 0.96997 * 119.99945 * 0.02562 * 15 14 2 38 38 H 1.08999 * 109.53319 * 302.98790 * 23 18 16 39 39 H 1.08992 * 109.51748 * 182.79007 * 23 18 16 40 40 H 1.09002 * 109.48343 * 297.61643 * 24 23 18 41 41 H 1.08999 * 109.47546 * 177.59237 * 24 23 18 42 42 H 1.08995 * 109.48500 * 181.13987 * 26 25 24 43 43 H 1.09000 * 109.47974 * 301.16817 * 26 25 24 44 44 H 1.09003 * 109.51867 * 62.29966 * 27 26 25 45 45 H 1.09005 * 109.52093 * 182.41951 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 1.6523 0.0354 -2.4425 6 6 2.0017 -0.4201 -3.6856 7 1 2.5634 -1.3370 -3.7866 8 6 1.6349 0.2971 -4.8161 9 7 0.9507 1.4148 -4.6931 10 14 2.1121 -0.3240 -6.5119 11 1 1.5197 -1.6679 -6.7317 12 1 1.6043 0.6151 -7.5441 13 1 3.5913 -0.4134 -6.6082 14 6 2.0401 -0.7213 1.2491 15 7 1.6526 0.0353 2.4423 16 6 1.9958 -0.4137 3.6659 17 8 2.6258 -1.4439 3.7791 18 6 1.5968 0.3643 4.8932 19 6 2.2023 1.7678 4.8289 20 9 3.5970 1.6720 4.7756 21 9 1.7361 2.4250 3.6852 22 9 1.8277 2.4901 5.9670 23 6 0.0696 0.4657 4.9616 24 6 -0.5212 -0.9394 5.1040 25 8 0.0173 -1.5654 6.2703 26 6 1.4365 -1.7300 6.2416 27 6 2.1062 -0.3567 6.1450 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1263 -0.7994 -1.2058 32 1 1.6053 -1.7198 -1.2952 33 1 1.1481 0.8592 -2.3517 34 1 0.6941 1.9157 -5.4830 35 1 3.1264 -0.7995 1.2054 36 1 1.6055 -1.7198 1.2950 37 1 1.1485 0.8590 2.3517 38 1 -0.3062 0.9281 4.0489 39 1 -0.2170 1.0703 5.8221 40 1 -0.2681 -1.5310 4.2242 41 1 -1.6051 -0.8703 5.1961 42 1 1.7630 -2.2303 7.1533 43 1 1.7152 -2.3321 5.3768 44 1 1.8607 0.2313 7.0294 45 1 3.1871 -0.4823 6.0797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714391096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:39 Heat of formation + Delta-G solvation = -254.484957 kcal Electronic energy + Delta-G solvation = -31507.316279 eV Core-core repulsion = 26722.940369 eV Total energy + Delta-G solvation = -4784.375911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.39391 -48.87813 -48.81639 -42.00890 -39.55988 -38.23926 -36.10874 -35.61784 -34.14601 -32.30852 -31.80958 -28.86499 -27.82978 -27.15563 -25.00966 -24.87958 -24.21907 -23.03811 -21.66688 -20.77833 -19.64541 -19.55906 -19.44269 -19.05431 -17.84569 -17.48947 -17.04428 -16.65100 -16.58689 -16.29973 -15.92595 -15.82692 -15.68612 -15.56192 -15.39053 -15.24125 -15.14367 -14.98992 -14.95191 -14.75566 -14.65074 -14.20529 -13.70279 -13.58861 -13.51920 -13.48131 -13.20203 -12.96737 -12.77889 -12.48452 -12.22814 -12.20675 -12.07999 -11.99469 -11.82236 -11.68182 -11.65035 -11.12539 -10.93735 -10.60177 -10.25486 -8.99834 -7.95734 -5.24030 0.93660 1.47632 1.50192 1.56267 1.60469 1.72059 2.46438 2.55822 2.60761 2.79726 2.87277 3.35018 3.36935 3.38028 3.46992 3.67555 3.78424 3.92958 4.03645 4.14249 4.17745 4.32957 4.34529 4.42543 4.50826 4.57658 4.66645 4.70464 4.70703 4.81491 4.89654 4.91025 4.97314 5.01433 5.11206 5.20565 5.35418 5.45414 5.49512 6.12325 6.20970 6.27188 6.86645 7.33813 8.09064 8.32895 9.27536 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.020116 B = 0.002571 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.563455 B =10886.026740 C =11340.254258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 H 0.074 0.926 4 C 0.158 3.842 5 N -0.741 5.741 6 C -0.249 4.249 7 H 0.074 0.926 8 C -0.073 4.073 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.279 1.279 14 C 0.137 3.863 15 N -0.709 5.709 16 C 0.520 3.480 17 O -0.541 6.541 18 C -0.123 4.123 19 C 0.466 3.534 20 F -0.183 7.183 21 F -0.176 7.176 22 F -0.166 7.166 23 C -0.148 4.148 24 C 0.060 3.940 25 O -0.389 6.389 26 C 0.056 3.944 27 C -0.133 4.133 28 H 0.074 0.926 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.025 0.975 33 H 0.376 0.624 34 H 0.252 0.748 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.412 0.588 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -0.801 27.330 27.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.380 4.380 7 H 0.092 0.908 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.205 1.205 14 C 0.013 3.987 15 N -0.362 5.362 16 C 0.304 3.696 17 O -0.418 6.418 18 C -0.128 4.128 19 C 0.411 3.589 20 F -0.165 7.165 21 F -0.158 7.158 22 F -0.148 7.148 23 C -0.185 4.185 24 C -0.016 4.016 25 O -0.308 6.308 26 C -0.021 4.021 27 C -0.171 4.171 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.209 0.791 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.125 0.875 39 H 0.133 0.867 40 H 0.062 0.938 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.079 0.921 44 H 0.126 0.874 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.962 -1.684 27.415 27.537 hybrid contribution 0.374 0.964 -1.630 1.931 sum -1.588 -0.720 25.785 25.843 Atomic orbital electron populations 1.21735 0.93606 1.02236 1.01753 1.21353 0.97441 0.99947 0.92862 0.90747 1.20714 0.96512 0.94206 0.85496 1.42497 1.66798 1.27855 1.01334 1.19596 1.27981 1.05392 0.85073 0.90812 1.25533 1.01653 0.97854 1.01490 1.69795 1.44988 1.17843 1.29216 0.85232 0.77868 0.77209 0.79570 1.20391 1.22074 1.20540 1.21254 0.99946 0.95220 0.82262 1.46128 1.56758 1.28099 1.05201 1.19971 0.79485 0.85852 0.84248 1.90698 1.39830 1.24954 1.86320 1.22330 1.01627 0.90684 0.98179 1.20151 0.76343 0.88309 0.74080 1.93219 1.30756 1.96405 1.96081 1.93161 1.88314 1.83234 1.51047 1.93210 1.90998 1.79897 1.50650 1.22487 0.87687 1.01325 1.07014 1.22688 1.00471 0.90283 0.88201 1.87936 1.21532 1.80325 1.40967 1.22810 0.80044 0.94854 1.04370 1.22177 1.02399 0.98339 0.94149 0.90711 0.93851 0.92409 0.96325 0.95736 0.79107 0.93947 0.91694 0.90581 0.74972 0.87539 0.86666 0.93801 0.85292 0.86403 0.92144 0.87405 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.94 71.98 0.64 -2.97 16 2 C -0.10 -2.78 2.46 -10.79 -0.03 -2.80 16 3 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.16 6.04 5.65 86.38 0.49 6.53 16 5 N -0.74 -36.81 5.33 -343.44 -1.83 -38.64 16 6 C -0.25 -13.81 9.99 84.04 0.84 -12.97 16 7 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 8 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 9 N -0.97 -58.50 13.06 21.65 0.28 -58.21 16 10 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 C 0.14 3.36 5.06 86.38 0.44 3.79 16 15 N -0.71 -14.56 4.85 -463.08 -2.25 -16.80 16 16 C 0.52 11.21 4.89 87.65 0.43 11.64 16 17 O -0.54 -14.78 13.84 -3.05 -0.04 -14.82 16 18 C -0.12 -2.00 0.25 -52.80 -0.01 -2.02 16 19 C 0.47 8.12 2.22 71.98 0.16 8.28 16 20 F -0.18 -3.89 16.58 44.97 0.75 -3.15 16 21 F -0.18 -3.13 14.65 44.97 0.66 -2.47 16 22 F -0.17 -2.63 16.18 44.97 0.73 -1.90 16 23 C -0.15 -1.71 4.61 30.69 0.14 -1.57 16 24 C 0.06 0.81 6.61 72.01 0.48 1.28 16 25 O -0.39 -6.67 10.77 -148.98 -1.60 -8.27 16 26 C 0.06 0.91 6.55 72.01 0.47 1.38 16 27 C -0.13 -2.01 4.31 30.69 0.13 -1.88 16 28 H 0.07 1.46 7.18 -2.39 -0.02 1.45 16 29 H 0.04 1.42 7.18 -2.39 -0.02 1.40 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.38 19.63 6.85 -92.71 -0.63 19.00 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.41 7.17 5.23 -92.71 -0.48 6.69 16 38 H 0.11 0.95 7.30 -2.39 -0.02 0.93 16 39 H 0.11 1.04 7.72 -2.39 -0.02 1.02 16 40 H 0.04 0.71 7.38 -2.39 -0.02 0.69 16 41 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.27 5.80 -2.39 -0.01 1.26 16 44 H 0.11 1.27 7.73 -2.39 -0.02 1.25 16 45 H 0.09 1.48 7.79 -2.38 -0.02 1.46 16 Total: -1.00 -67.32 364.63 3.28 -64.04 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.09 Total: 27.33 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 4.65 Total: 5.01 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.80 Total: -113.66 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -1.65 Total: -23.09 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 2.13 Total: -7.52 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -67.32 3.28 -64.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714391096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.442 kcal (2) G-P(sol) polarization free energy of solvation -67.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -257.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -254.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds