Wall clock time and date at job start Tue Mar 31 2020 21:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47259 * 2 1 4 4 C 1.52997 * 109.47262 * 120.00185 * 2 1 3 5 5 N 1.46503 * 109.46941 * 295.00224 * 4 2 1 6 6 C 1.36943 * 119.99770 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99632 * 179.72128 * 6 5 4 9 9 N 1.31620 * 120.00240 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99772 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46775 * 60.00371 * 10 8 6 12 12 H 1.48498 * 109.47280 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47475 * 300.00233 * 10 8 6 14 14 C 1.53001 * 109.47173 * 240.00072 * 2 1 3 15 15 N 1.46506 * 109.46897 * 65.00284 * 14 2 1 16 16 C 1.34777 * 119.99532 * 180.02562 * 15 14 2 17 17 O 1.21284 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99397 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.47518 * 295.55618 * 18 16 15 20 20 C 1.53004 * 109.47507 * 55.56404 * 18 16 15 21 21 C 1.50703 * 109.47013 * 175.55932 * 18 16 15 22 22 C 1.38240 * 119.98877 * 245.66481 * 21 18 16 23 23 C 1.38213 * 120.01741 * 179.72432 * 22 21 18 24 24 C 1.38360 * 119.98442 * 0.54598 * 23 22 21 25 25 Cl 1.73595 * 120.01635 * 179.70431 * 24 23 22 26 26 C 1.38353 * 119.97060 * 359.72372 * 24 23 22 27 27 C 1.38217 * 119.98953 * 0.02562 * 26 24 23 28 28 H 1.09003 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47607 * 299.99874 * 1 2 3 30 30 H 1.09005 * 109.47452 * 59.99794 * 1 2 3 31 31 H 1.08995 * 109.47693 * 175.00140 * 4 2 1 32 32 H 1.09002 * 109.47283 * 55.00151 * 4 2 1 33 33 H 0.97002 * 120.00145 * 359.97438 * 5 4 2 34 34 H 0.96995 * 119.99911 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47240 * 185.00078 * 14 2 1 36 36 H 1.09000 * 109.47378 * 305.00102 * 14 2 1 37 37 H 0.96993 * 120.00239 * 359.97438 * 15 14 2 38 38 H 1.09004 * 109.46657 * 60.00346 * 19 18 16 39 39 H 1.08994 * 109.47184 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47058 * 300.00995 * 19 18 16 41 41 H 1.08993 * 109.47069 * 59.99345 * 20 18 16 42 42 H 1.08994 * 109.47316 * 180.02562 * 20 18 16 43 43 H 1.09006 * 109.46350 * 299.99468 * 20 18 16 44 44 H 1.08001 * 119.99436 * 359.97438 * 22 21 18 45 45 H 1.07997 * 120.01369 * 180.27245 * 23 22 21 46 46 H 1.07998 * 120.00480 * 179.97438 * 26 24 23 47 47 H 1.07995 * 119.99760 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 0.0353 2.4423 6 6 2.0010 -0.4209 3.6856 7 1 2.5613 -1.3386 3.7865 8 6 1.6387 0.2990 4.8158 9 7 0.9597 1.4197 4.6925 10 14 2.1137 -0.3237 6.5117 11 1 3.5925 -0.4209 6.6070 12 1 1.6127 0.6194 7.5435 13 1 1.5142 -1.6642 6.7327 14 6 2.0399 -0.7212 -1.2492 15 7 1.6524 0.0355 -2.4424 16 6 1.9956 -0.4135 -3.6660 17 8 2.6255 -1.4437 -3.7793 18 6 1.5964 0.3646 -4.8933 19 6 0.0712 0.3799 -5.0139 20 6 2.1134 1.8000 -4.7777 21 6 2.1904 -0.2862 -6.1159 22 6 3.1470 0.3810 -6.8580 23 6 3.6963 -0.2177 -7.9761 24 6 3.2804 -1.4804 -8.3591 25 17 3.9642 -2.2299 -9.7677 26 6 2.3188 -2.1454 -7.6192 27 6 1.7740 -1.5478 -6.4983 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.1262 -0.7995 1.2056 32 1 1.6054 -1.7199 1.2951 33 1 1.1487 0.8594 2.3517 34 1 0.7069 1.9229 5.4823 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2952 37 1 1.1483 0.8591 -2.3518 38 1 -0.3584 0.8507 -4.1296 39 1 -0.2174 0.9431 -5.9013 40 1 -0.2970 -0.6427 -5.0962 41 1 3.1999 1.7891 -4.6918 42 1 1.8243 2.3629 -5.6652 43 1 1.6837 2.2708 -3.8934 44 1 3.4682 1.3686 -6.5617 45 1 4.4469 0.3018 -8.5533 46 1 1.9934 -3.1309 -7.9179 47 1 1.0232 -2.0666 -5.9208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714428978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:47 Heat of formation + Delta-G solvation = -25.079433 kcal Electronic energy + Delta-G solvation = -26425.462671 eV Core-core repulsion = 22633.600436 eV Total energy + Delta-G solvation = -3791.862236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92400 -39.12618 -37.09355 -36.67768 -35.39977 -34.36150 -32.44829 -31.53072 -30.20278 -29.65238 -27.86032 -26.62374 -25.47131 -24.17885 -22.87926 -22.67366 -21.65632 -20.29057 -19.39025 -17.81916 -17.26514 -16.79880 -16.27714 -15.80221 -15.39470 -15.21933 -14.71699 -14.58012 -14.35765 -14.19845 -13.90823 -13.66346 -13.64483 -13.14508 -13.01948 -12.75827 -12.65959 -12.54129 -12.36386 -12.29731 -12.10855 -12.05124 -11.72298 -11.44689 -11.33759 -11.08150 -10.97935 -10.91585 -10.71932 -10.59441 -10.44623 -10.10691 -9.81172 -9.66032 -9.30062 -9.05861 -8.88817 -8.87114 -6.94104 -5.78608 -3.07040 0.81405 1.02298 1.83459 2.54094 3.01076 3.43524 3.43908 3.47897 3.48967 4.06424 4.30429 4.49718 4.57658 4.58039 4.65317 4.67408 5.00138 5.02196 5.09744 5.18489 5.19336 5.29384 5.31912 5.34631 5.38948 5.40886 5.56167 5.62902 5.67212 5.73368 5.78225 5.92280 5.93327 5.94722 5.97329 6.08387 6.21104 6.22736 6.35984 6.45099 6.48119 6.62286 6.74766 6.84112 7.43158 7.68680 8.13902 8.40586 9.51833 10.08872 10.43701 11.44273 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.001776 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.171671 B =15760.645331 C =16156.262290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.730 5.730 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.721 5.721 16 C 0.520 3.480 17 O -0.532 6.532 18 C -0.044 4.044 19 C -0.139 4.139 20 C -0.147 4.147 21 C -0.053 4.053 22 C -0.103 4.103 23 C -0.113 4.113 24 C -0.035 4.035 25 Cl -0.077 7.077 26 C -0.111 4.111 27 C -0.075 4.075 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.136 0.864 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.325 0.012 -29.470 29.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.003 3.997 15 N -0.373 5.373 16 C 0.305 3.695 17 O -0.408 6.408 18 C -0.047 4.047 19 C -0.197 4.197 20 C -0.204 4.204 21 C -0.054 4.054 22 C -0.121 4.121 23 C -0.131 4.131 24 C -0.061 4.061 25 Cl -0.048 7.048 26 C -0.130 4.130 27 C -0.093 4.093 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.154 0.846 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.262 -0.910 -29.512 29.527 hybrid contribution -0.027 0.235 0.958 0.987 sum 0.235 -0.675 -28.554 28.563 Atomic orbital electron populations 1.21789 0.94671 1.01936 1.01450 1.21548 0.96692 1.00481 0.94198 0.90558 1.20573 0.96607 0.94212 0.85391 1.42326 1.66963 1.27656 1.00559 1.19196 1.28889 1.05326 0.83686 0.91210 1.24732 1.01057 0.97337 0.97860 1.69642 1.43755 1.16309 1.28625 0.86254 0.78033 0.77704 0.84114 1.21272 1.21690 1.21264 1.21429 1.00149 0.95249 0.82872 1.46044 1.57575 1.27883 1.05779 1.20263 0.79461 0.85532 0.84244 1.90733 1.39356 1.24228 1.86504 1.19744 0.97597 0.96151 0.91227 1.21901 0.91311 1.03210 1.03245 1.21998 1.02048 0.93099 1.03266 1.19404 0.96548 0.94611 0.94834 1.21108 0.96037 1.00502 0.94484 1.20995 1.00663 0.93722 0.97765 1.20943 0.98814 0.94960 0.91424 1.98367 1.84256 1.82208 1.39978 1.21012 0.96400 1.00315 0.95231 1.20896 0.99274 0.94154 0.94976 0.92817 0.91136 0.93968 0.96158 0.96018 0.78216 0.93484 0.91370 0.91350 0.76541 0.91303 0.90995 0.91656 0.91411 0.90816 0.91305 0.84628 0.84997 0.84999 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.15 0.33 -1.65 16 2 C -0.11 -1.62 2.46 -90.63 -0.22 -1.85 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 5 N -0.73 -18.04 5.33 -59.91 -0.32 -18.36 16 6 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 10 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 15 N -0.72 -7.73 5.10 -60.29 -0.31 -8.03 16 16 C 0.52 6.05 6.40 -10.98 -0.07 5.97 16 17 O -0.53 -8.32 15.33 5.55 0.09 -8.23 16 18 C -0.04 -0.36 0.72 -156.81 -0.11 -0.48 16 19 C -0.14 -0.90 8.17 37.16 0.30 -0.60 16 20 C -0.15 -0.92 7.01 37.16 0.26 -0.66 16 21 C -0.05 -0.50 4.33 -104.62 -0.45 -0.95 16 22 C -0.10 -0.87 8.99 -39.59 -0.36 -1.22 16 23 C -0.11 -0.97 9.83 -39.55 -0.39 -1.35 16 24 C -0.03 -0.33 6.32 -39.49 -0.25 -0.58 16 25 Cl -0.08 -0.68 28.96 -51.86 -1.50 -2.18 16 26 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 27 C -0.07 -0.73 8.15 -39.59 -0.32 -1.05 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 30 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 3.40 6.54 -40.82 -0.27 3.14 16 38 H 0.07 0.38 7.88 -51.93 -0.41 -0.02 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.45 7.08 -51.93 -0.37 0.09 16 41 H 0.07 0.47 7.25 -51.93 -0.38 0.09 16 42 H 0.07 0.35 7.78 -51.93 -0.40 -0.05 16 43 H 0.07 0.37 7.33 -51.93 -0.38 -0.01 16 44 H 0.14 0.86 5.91 -52.49 -0.31 0.55 16 45 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.13 1.20 7.23 -52.49 -0.38 0.82 16 LS Contribution 393.44 15.07 5.93 5.93 Total: -1.00 -32.59 393.44 -9.64 -42.23 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.27 Total: 6.90 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.96 Total: -8.42 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.10 Total: -53.52 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.59 -9.64 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714428978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.147 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds