Wall clock time and date at job start Tue Mar 31 2020 21:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47259 * 2 1 4 4 C 1.52997 * 109.47262 * 120.00185 * 2 1 3 5 5 N 1.46503 * 109.46941 * 295.00224 * 4 2 1 6 6 C 1.36943 * 119.99770 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00230 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99632 * 179.72128 * 6 5 4 9 9 N 1.31620 * 120.00240 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99772 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46775 * 60.00371 * 10 8 6 12 12 H 1.48498 * 109.47280 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47475 * 300.00233 * 10 8 6 14 14 C 1.53001 * 109.47173 * 240.00072 * 2 1 3 15 15 N 1.46506 * 109.46897 * 65.00284 * 14 2 1 16 16 C 1.34777 * 119.99532 * 180.02562 * 15 14 2 17 17 O 1.21284 * 120.00370 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99397 * 179.97438 * 16 15 14 19 19 C 1.53001 * 109.47518 * 295.55618 * 18 16 15 20 20 C 1.53004 * 109.47507 * 55.56404 * 18 16 15 21 21 C 1.50703 * 109.47013 * 175.55932 * 18 16 15 22 22 C 1.38240 * 119.98877 * 245.66481 * 21 18 16 23 23 C 1.38213 * 120.01741 * 179.72432 * 22 21 18 24 24 C 1.38360 * 119.98442 * 0.54598 * 23 22 21 25 25 Cl 1.73595 * 120.01635 * 179.70431 * 24 23 22 26 26 C 1.38353 * 119.97060 * 359.72372 * 24 23 22 27 27 C 1.38217 * 119.98953 * 0.02562 * 26 24 23 28 28 H 1.09003 * 109.47447 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47607 * 299.99874 * 1 2 3 30 30 H 1.09005 * 109.47452 * 59.99794 * 1 2 3 31 31 H 1.08995 * 109.47693 * 175.00140 * 4 2 1 32 32 H 1.09002 * 109.47283 * 55.00151 * 4 2 1 33 33 H 0.97002 * 120.00145 * 359.97438 * 5 4 2 34 34 H 0.96995 * 119.99911 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47240 * 185.00078 * 14 2 1 36 36 H 1.09000 * 109.47378 * 305.00102 * 14 2 1 37 37 H 0.96993 * 120.00239 * 359.97438 * 15 14 2 38 38 H 1.09004 * 109.46657 * 60.00346 * 19 18 16 39 39 H 1.08994 * 109.47184 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.47058 * 300.00995 * 19 18 16 41 41 H 1.08993 * 109.47069 * 59.99345 * 20 18 16 42 42 H 1.08994 * 109.47316 * 180.02562 * 20 18 16 43 43 H 1.09006 * 109.46350 * 299.99468 * 20 18 16 44 44 H 1.08001 * 119.99436 * 359.97438 * 22 21 18 45 45 H 1.07997 * 120.01369 * 180.27245 * 23 22 21 46 46 H 1.07998 * 120.00480 * 179.97438 * 26 24 23 47 47 H 1.07995 * 119.99760 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6523 0.0353 2.4423 6 6 2.0010 -0.4209 3.6856 7 1 2.5613 -1.3386 3.7865 8 6 1.6387 0.2990 4.8158 9 7 0.9597 1.4197 4.6925 10 14 2.1137 -0.3237 6.5117 11 1 3.5925 -0.4209 6.6070 12 1 1.6127 0.6194 7.5435 13 1 1.5142 -1.6642 6.7327 14 6 2.0399 -0.7212 -1.2492 15 7 1.6524 0.0355 -2.4424 16 6 1.9956 -0.4135 -3.6660 17 8 2.6255 -1.4437 -3.7793 18 6 1.5964 0.3646 -4.8933 19 6 0.0712 0.3799 -5.0139 20 6 2.1134 1.8000 -4.7777 21 6 2.1904 -0.2862 -6.1159 22 6 3.1470 0.3810 -6.8580 23 6 3.6963 -0.2177 -7.9761 24 6 3.2804 -1.4804 -8.3591 25 17 3.9642 -2.2299 -9.7677 26 6 2.3188 -2.1454 -7.6192 27 6 1.7740 -1.5478 -6.4983 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.1262 -0.7995 1.2056 32 1 1.6054 -1.7199 1.2951 33 1 1.1487 0.8594 2.3517 34 1 0.7069 1.9229 5.4823 35 1 3.1263 -0.7995 -1.2056 36 1 1.6053 -1.7198 -1.2952 37 1 1.1483 0.8591 -2.3518 38 1 -0.3584 0.8507 -4.1296 39 1 -0.2174 0.9431 -5.9013 40 1 -0.2970 -0.6427 -5.0962 41 1 3.1999 1.7891 -4.6918 42 1 1.8243 2.3629 -5.6652 43 1 1.6837 2.2708 -3.8934 44 1 3.4682 1.3686 -6.5617 45 1 4.4469 0.3018 -8.5533 46 1 1.9934 -3.1309 -7.9179 47 1 1.0232 -2.0666 -5.9208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714428978.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:46 Heat of formation + Delta-G solvation = -44.030496 kcal Electronic energy + Delta-G solvation = -26426.284451 eV Core-core repulsion = 22633.600436 eV Total energy + Delta-G solvation = -3792.684016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70840 -39.93959 -38.26745 -37.53373 -36.14499 -35.89696 -33.99598 -32.17907 -31.88714 -30.43149 -28.34899 -27.78716 -27.11159 -25.07301 -24.25882 -23.49385 -22.62020 -21.48811 -20.38033 -19.17098 -18.42863 -17.77237 -17.30324 -16.62455 -16.59322 -16.29619 -15.89990 -15.53624 -15.39600 -15.30268 -15.21023 -14.69811 -14.54274 -14.33044 -14.19859 -13.75249 -13.57312 -13.38274 -13.28184 -13.22866 -12.95227 -12.85298 -12.77157 -12.69476 -12.41258 -12.21628 -12.17598 -12.07646 -11.98496 -11.92038 -11.69670 -11.63770 -11.59915 -10.93309 -10.71463 -10.07310 -9.96471 -9.55738 -8.98857 -7.95147 -5.23222 0.12722 0.35637 1.15106 1.47895 1.50325 1.56476 1.64771 2.13933 2.56662 2.72365 3.38336 3.42945 3.67787 3.73990 3.85657 3.95417 3.97366 4.02769 4.06897 4.10092 4.35804 4.37557 4.49757 4.55761 4.69262 4.71490 4.75750 4.76937 4.83113 4.86981 4.90014 4.95048 4.99193 5.06135 5.13599 5.20456 5.23288 5.29859 5.32467 5.34981 5.43095 5.49754 5.51094 5.57155 5.83042 6.27545 6.56836 7.25640 7.34587 8.09772 8.34377 9.27881 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.001776 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.171671 B =15760.645331 C =16156.262290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.156 3.844 5 N -0.740 5.740 6 C -0.249 4.249 7 H 0.072 0.928 8 C -0.072 4.072 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.139 3.861 15 N -0.710 5.710 16 C 0.519 3.481 17 O -0.576 6.576 18 C -0.036 4.036 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.065 4.065 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.047 4.047 25 Cl -0.076 7.076 26 C -0.122 4.122 27 C -0.089 4.089 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.017 0.983 32 H 0.020 0.980 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.413 0.587 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.422 0.893 -30.483 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.098 0.902 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.381 4.381 7 H 0.090 0.910 8 C -0.265 4.265 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.015 3.985 15 N -0.362 5.362 16 C 0.306 3.694 17 O -0.455 6.455 18 C -0.039 4.039 19 C -0.196 4.196 20 C -0.205 4.205 21 C -0.066 4.066 22 C -0.123 4.123 23 C -0.136 4.136 24 C -0.073 4.073 25 Cl -0.047 7.047 26 C -0.140 4.140 27 C -0.107 4.107 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.176 0.824 45 H 0.167 0.833 46 H 0.157 0.843 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.161 -0.030 -30.551 30.552 hybrid contribution 0.033 -0.093 1.205 1.209 sum 0.194 -0.124 -29.347 29.348 Atomic orbital electron populations 1.21725 0.93776 1.01899 1.01849 1.21320 0.97215 1.00043 0.92626 0.90208 1.20726 0.96424 0.94141 0.85818 1.42484 1.66824 1.27798 1.01256 1.19585 1.28129 1.05219 0.85154 0.90995 1.25521 1.01725 0.97829 1.01426 1.69787 1.45184 1.17493 1.29194 0.85240 0.77862 0.77168 0.79649 1.20569 1.21957 1.20543 1.21101 0.99320 0.95012 0.83101 1.45880 1.57401 1.28066 1.04893 1.20905 0.78372 0.85074 0.85095 1.90718 1.41384 1.26302 1.87134 1.19741 0.98782 0.96574 0.88787 1.21940 0.89791 1.03198 1.04664 1.22062 1.01729 0.91753 1.04945 1.19628 0.96922 0.94633 0.95371 1.21393 0.95391 1.01376 0.94109 1.21273 1.00831 0.93494 0.97971 1.21100 0.99079 0.95490 0.91651 1.98363 1.84212 1.82271 1.39879 1.21163 0.96673 1.00818 0.95381 1.20998 0.99688 0.94744 0.95254 0.93091 0.93902 0.90317 0.96466 0.96253 0.79011 0.93944 0.92480 0.92005 0.74906 0.89989 0.89413 0.92499 0.91988 0.88703 0.90108 0.82446 0.83305 0.84320 0.85611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.94 71.98 0.64 -2.96 16 2 C -0.09 -2.65 2.46 -10.80 -0.03 -2.67 16 3 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 4 C 0.16 6.07 5.65 86.38 0.49 6.55 16 5 N -0.74 -36.78 5.33 -343.46 -1.83 -38.61 16 6 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 7 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 8 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 9 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 10 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 C 0.14 3.52 5.06 86.38 0.44 3.96 16 15 N -0.71 -13.86 5.10 -463.04 -2.36 -16.23 16 16 C 0.52 11.36 6.40 87.66 0.56 11.92 16 17 O -0.58 -17.88 15.33 -3.04 -0.05 -17.92 16 18 C -0.04 -0.52 0.72 -53.67 -0.04 -0.55 16 19 C -0.14 -1.45 8.17 71.98 0.59 -0.86 16 20 C -0.15 -1.40 7.01 71.98 0.50 -0.90 16 21 C -0.06 -1.13 4.33 -19.86 -0.09 -1.21 16 22 C -0.10 -1.57 8.99 22.26 0.20 -1.37 16 23 C -0.12 -1.84 9.83 22.29 0.22 -1.62 16 24 C -0.05 -0.84 6.32 22.33 0.14 -0.70 16 25 Cl -0.08 -1.29 28.96 -2.72 -0.08 -1.37 16 26 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 27 C -0.09 -1.70 8.15 22.27 0.18 -1.52 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.40 7.18 -2.39 -0.02 1.38 16 30 H 0.08 1.50 7.18 -2.38 -0.02 1.49 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.38 19.53 6.85 -92.71 -0.64 18.90 16 34 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 5.80 6.54 -92.71 -0.61 5.19 16 38 H 0.08 0.64 7.88 -2.38 -0.02 0.62 16 39 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.70 7.08 -2.39 -0.02 0.69 16 41 H 0.06 0.68 7.25 -2.39 -0.02 0.66 16 42 H 0.09 0.53 7.78 -2.39 -0.02 0.52 16 43 H 0.08 0.59 7.33 -2.38 -0.02 0.57 16 44 H 0.16 1.56 5.91 -2.91 -0.02 1.55 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 47 H 0.13 2.39 7.23 -2.91 -0.02 2.37 16 Total: -1.00 -70.51 393.44 3.07 -67.44 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.26 Total: 27.22 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.34 Total: -10.68 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -3.91 Total: -112.61 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.05 Total: -17.92 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -70.51 3.07 -67.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714428978.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.413 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds