Wall clock time and date at job start Tue Mar 31 2020 20:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46571 * 2 1 4 4 C 1.52999 * 109.47670 * 120.00241 * 2 1 3 5 5 C 1.50699 * 109.46822 * 295.00530 * 4 2 1 6 6 C 1.38236 * 120.00554 * 264.71607 * 5 4 2 7 7 C 1.38218 * 120.01561 * 179.76763 * 6 5 4 8 8 C 1.38266 * 120.02339 * 0.51754 * 7 6 5 9 9 C 1.38189 * 120.01455 * 359.73561 * 8 7 6 10 10 C 1.38330 * 120.00777 * 84.99785 * 5 4 2 11 11 Cl 1.73597 * 120.01458 * 359.95194 * 10 5 4 12 12 C 1.50702 * 109.47086 * 240.00720 * 2 1 3 13 13 O 1.21280 * 119.99776 * 245.59931 * 12 2 1 14 14 N 1.34776 * 120.00171 * 65.32559 * 12 2 1 15 15 C 1.46499 * 119.99747 * 182.76008 * 14 12 2 16 16 C 1.46496 * 119.99921 * 2.76124 * 14 12 2 17 17 H 1.08998 * 109.47249 * 353.15765 * 16 14 12 18 18 C 1.53005 * 109.47110 * 113.15242 * 16 14 12 19 19 C 1.52995 * 109.47268 * 233.15093 * 16 14 12 20 20 N 1.46498 * 109.47199 * 54.99956 * 19 16 14 21 21 C 1.36935 * 120.00367 * 179.97438 * 20 19 16 22 22 H 1.07996 * 119.99930 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00121 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00063 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99971 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47210 * 89.99972 * 25 23 21 27 27 H 1.48498 * 109.46959 * 210.00226 * 25 23 21 28 28 H 1.48500 * 109.47250 * 329.99775 * 25 23 21 29 29 H 1.08998 * 109.46797 * 303.86466 * 1 2 3 30 30 H 1.09000 * 109.47171 * 63.87139 * 1 2 3 31 31 H 1.09004 * 109.46460 * 183.87132 * 1 2 3 32 32 H 1.09003 * 109.46575 * 55.00042 * 4 2 1 33 33 H 1.08993 * 109.47142 * 174.99957 * 4 2 1 34 34 H 1.08007 * 119.99076 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.99086 * 180.23110 * 7 6 5 36 36 H 1.07997 * 119.99157 * 179.76435 * 8 7 6 37 37 H 1.07996 * 120.00656 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47297 * 94.89686 * 15 14 12 39 39 H 1.09001 * 109.47124 * 214.89375 * 15 14 12 40 40 H 1.09000 * 109.47650 * 334.89283 * 15 14 12 41 41 H 1.08994 * 109.47384 * 179.97438 * 18 16 14 42 42 H 1.08999 * 109.47026 * 299.99757 * 18 16 14 43 43 H 1.08999 * 109.47115 * 59.99918 * 18 16 14 44 44 H 1.08996 * 109.47399 * 175.00431 * 19 16 14 45 45 H 1.09001 * 109.47379 * 295.00181 * 19 16 14 46 46 H 0.97000 * 119.99877 * 0.02562 * 20 19 16 47 47 H 0.97003 * 120.00068 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 6 2.5262 0.9551 3.0433 7 6 2.1590 1.6725 4.1662 8 6 0.9104 1.4844 4.7295 9 6 0.0269 0.5830 4.1669 10 6 0.3921 -0.1317 3.0396 11 17 -0.7174 -1.2639 2.3320 12 6 2.0324 -0.7103 -1.2306 13 8 2.6436 -1.7522 -1.1223 14 7 1.7976 -0.1905 -2.4517 15 6 2.2329 -0.9112 -3.6506 16 6 1.1072 1.0952 -2.5802 17 1 0.7559 1.4185 -1.6003 18 6 2.0731 2.1386 -3.1453 19 6 -0.0865 0.9409 -3.5246 20 7 -0.9508 -0.1410 -3.0466 21 6 -2.0891 -0.4636 -3.7361 22 1 -2.3495 0.0794 -4.6326 23 6 -2.9083 -1.4884 -3.2828 24 7 -4.0021 -1.7988 -3.9459 25 14 -2.4583 -2.4271 -1.7318 26 1 -3.0648 -1.7566 -0.5538 27 1 -2.9710 -3.8174 -1.8284 28 1 -0.9813 -2.4537 -1.5802 29 1 -0.3633 0.5726 0.8533 30 1 -0.3633 0.4526 -0.9226 31 1 -0.3632 -1.0254 0.0694 32 1 1.6055 -1.7199 1.2950 33 1 3.1264 -0.7994 1.2054 34 1 3.5033 1.0994 2.6061 35 1 2.8492 2.3769 4.6064 36 1 0.6253 2.0424 5.6091 37 1 -0.9485 0.4364 4.6068 38 1 1.4080 -1.5129 -4.0324 39 1 2.5436 -0.1957 -4.4119 40 1 3.0710 -1.5614 -3.3995 41 1 1.5593 3.0950 -3.2413 42 1 2.9235 2.2485 -2.4724 43 1 2.4245 1.8153 -4.1252 44 1 -0.6516 1.8726 -3.5512 45 1 0.2712 0.7043 -4.5267 46 1 -0.7172 -0.6285 -2.2412 47 1 -4.5743 -2.5152 -3.6293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714775375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:38 Heat of formation + Delta-G solvation = 6.762929 kcal Electronic energy + Delta-G solvation = -28714.022614 eV Core-core repulsion = 24923.541167 eV Total energy + Delta-G solvation = -3790.481447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46090 -39.46555 -36.89821 -36.52739 -35.07312 -34.00553 -31.62797 -31.35720 -30.82643 -30.45681 -27.17979 -26.66937 -26.02342 -23.59694 -22.81909 -22.37662 -21.43687 -20.72262 -18.83120 -17.63870 -17.39553 -16.92269 -15.89158 -15.78813 -15.44938 -15.27441 -14.71582 -14.47469 -14.14946 -14.06580 -13.89720 -13.80681 -13.12593 -12.96370 -12.88280 -12.65361 -12.53275 -12.40283 -12.05338 -12.01739 -11.96163 -11.77119 -11.61941 -11.58437 -11.37494 -11.13709 -11.07758 -10.92846 -10.81621 -10.53897 -10.35655 -9.96323 -9.60052 -9.44252 -9.10406 -8.93488 -8.76954 -8.37679 -7.26318 -5.79710 -3.15099 0.93562 1.02819 2.09380 2.84285 3.19899 3.35670 3.41072 3.42419 3.45223 4.36826 4.54986 4.57328 4.68044 4.78079 4.83733 4.92184 4.99117 5.09841 5.16406 5.18813 5.29639 5.34114 5.45077 5.51100 5.61991 5.62964 5.70992 5.72061 5.78499 5.84227 5.87085 5.93809 5.97230 6.01092 6.13770 6.15774 6.17146 6.25517 6.27153 6.38501 6.48569 6.54907 6.57195 6.79357 7.62163 7.96550 8.38966 8.40102 9.18766 9.91160 10.09906 11.38447 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.004996 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.142385 B = 5603.279823 C = 7052.320975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.100 4.100 3 H 0.095 0.905 4 C -0.067 4.067 5 C -0.067 4.067 6 C -0.106 4.106 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.109 4.109 10 C -0.034 4.034 11 Cl -0.056 7.056 12 C 0.519 3.481 13 O -0.546 6.546 14 N -0.597 5.597 15 C 0.085 3.915 16 C 0.107 3.893 17 H 0.100 0.900 18 C -0.159 4.159 19 C 0.145 3.855 20 N -0.754 5.754 21 C -0.245 4.245 22 H 0.092 0.908 23 C 0.011 3.989 24 N -0.931 5.931 25 Si 0.864 3.136 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.273 1.273 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.040 0.960 45 H 0.033 0.967 46 H 0.365 0.635 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.829 10.038 14.804 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.121 4.121 3 H 0.113 0.887 4 C -0.105 4.105 5 C -0.067 4.067 6 C -0.124 4.124 7 C -0.134 4.134 8 C -0.133 4.133 9 C -0.128 4.128 10 C -0.061 4.061 11 Cl -0.027 7.027 12 C 0.307 3.693 13 O -0.424 6.424 14 N -0.329 5.329 15 C -0.058 4.058 16 C 0.003 3.997 17 H 0.118 0.882 18 C -0.217 4.217 19 C 0.017 3.983 20 N -0.402 5.402 21 C -0.375 4.375 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.579 5.579 25 Si 0.694 3.306 26 H -0.205 1.205 27 H -0.216 1.216 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.201 0.799 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.865 9.368 14.591 22.839 hybrid contribution -0.078 -0.816 0.937 1.245 sum 14.787 8.552 15.528 23.085 Atomic orbital electron populations 1.22759 0.92231 1.04156 1.04218 1.21229 0.98282 1.00283 0.92332 0.88737 1.20492 1.02079 0.98887 0.89025 1.19800 0.92321 0.97516 0.97113 1.21047 0.99433 0.95751 0.96150 1.21221 0.96624 0.99434 0.96077 1.21094 0.93822 0.98186 1.00184 1.21092 1.00604 0.96304 0.94773 1.20958 0.92068 0.96445 0.96582 1.98424 1.61612 1.59957 1.82660 1.20524 0.79018 0.85196 0.84579 1.90650 1.41685 1.23560 1.86539 1.47740 1.57452 1.21749 1.05996 1.21599 1.00745 0.96898 0.86521 1.21839 0.92934 0.82939 1.01982 0.88204 1.22100 0.99265 0.98716 1.01649 1.21004 0.89276 0.92612 0.95401 1.42871 1.26347 1.39837 1.31181 1.19034 0.97033 1.14229 1.07166 0.89066 1.24593 0.96918 0.98750 0.98220 1.69681 1.14714 1.32999 1.40507 0.86876 0.78303 0.80321 0.85059 1.20509 1.21645 1.19874 0.91087 0.89749 0.91204 0.89384 0.89808 0.85128 0.85506 0.85280 0.84953 0.91684 0.91642 0.90911 0.91083 0.92506 0.91954 0.94187 0.94942 0.79899 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 6.04 37.16 0.22 -2.69 16 2 C -0.10 -1.44 1.86 -91.77 -0.17 -1.61 16 3 H 0.09 1.12 7.52 -51.93 -0.39 0.73 16 4 C -0.07 -0.91 3.93 -27.88 -0.11 -1.02 16 5 C -0.07 -0.79 4.86 -104.59 -0.51 -1.29 16 6 C -0.11 -1.00 9.68 -39.59 -0.38 -1.38 16 7 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 8 C -0.11 -0.96 10.05 -39.59 -0.40 -1.36 16 9 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 10 C -0.03 -0.42 5.20 -39.50 -0.21 -0.63 16 11 Cl -0.06 -0.83 23.06 -51.86 -1.20 -2.03 16 12 C 0.52 8.94 7.00 -10.98 -0.08 8.86 16 13 O -0.55 -10.93 15.48 5.56 0.09 -10.84 16 14 N -0.60 -9.64 2.20 -173.93 -0.38 -10.03 16 15 C 0.08 1.33 9.44 59.85 0.57 1.89 16 16 C 0.11 1.54 2.07 -67.93 -0.14 1.40 16 17 H 0.10 1.39 4.20 -51.93 -0.22 1.17 16 18 C -0.16 -1.70 9.28 37.16 0.34 -1.36 16 19 C 0.15 2.63 5.34 -4.05 -0.02 2.61 16 20 N -0.75 -17.60 4.70 -59.92 -0.28 -17.88 16 21 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 22 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 23 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 24 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 25 Si 0.86 22.92 26.89 -169.99 -4.57 18.35 16 26 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 28 H -0.27 -7.09 6.16 56.52 0.35 -6.74 16 29 H 0.07 1.06 5.68 -51.93 -0.29 0.76 16 30 H 0.08 1.50 3.29 -51.93 -0.17 1.33 16 31 H 0.07 1.33 5.15 -51.93 -0.27 1.07 16 32 H 0.09 1.37 7.13 -51.93 -0.37 1.00 16 33 H 0.08 1.05 7.95 -51.93 -0.41 0.64 16 34 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.06 0.84 6.81 -51.93 -0.35 0.48 16 40 H 0.07 1.13 7.25 -51.93 -0.38 0.75 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.66 6.95 -51.93 -0.36 0.29 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.60 7.71 -51.93 -0.40 0.20 16 46 H 0.37 8.50 2.77 -40.82 -0.11 8.38 16 47 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -34.14 370.83 -8.62 -42.76 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.72 Total: 9.05 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.92 Total: -6.23 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.11 Total: -56.64 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.57 Total: 18.35 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.20 Total: -2.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.14 -8.62 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714775375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.525 kcal (2) G-P(sol) polarization free energy of solvation -34.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds