Wall clock time and date at job start Tue Mar 31 2020 20:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46571 * 2 1 4 4 C 1.52999 * 109.47670 * 120.00241 * 2 1 3 5 5 C 1.50699 * 109.46822 * 295.00530 * 4 2 1 6 6 C 1.38236 * 120.00554 * 264.71607 * 5 4 2 7 7 C 1.38218 * 120.01561 * 179.76763 * 6 5 4 8 8 C 1.38266 * 120.02339 * 0.51754 * 7 6 5 9 9 C 1.38189 * 120.01455 * 359.73561 * 8 7 6 10 10 C 1.38330 * 120.00777 * 84.99785 * 5 4 2 11 11 Cl 1.73597 * 120.01458 * 359.95194 * 10 5 4 12 12 C 1.50702 * 109.47086 * 240.00720 * 2 1 3 13 13 O 1.21280 * 119.99776 * 245.59931 * 12 2 1 14 14 N 1.34776 * 120.00171 * 65.32559 * 12 2 1 15 15 C 1.46499 * 119.99747 * 182.76008 * 14 12 2 16 16 C 1.46496 * 119.99921 * 2.76124 * 14 12 2 17 17 H 1.08998 * 109.47249 * 353.15765 * 16 14 12 18 18 C 1.53005 * 109.47110 * 113.15242 * 16 14 12 19 19 C 1.52995 * 109.47268 * 233.15093 * 16 14 12 20 20 N 1.46498 * 109.47199 * 54.99956 * 19 16 14 21 21 C 1.36935 * 120.00367 * 179.97438 * 20 19 16 22 22 H 1.07996 * 119.99930 * 0.02562 * 21 20 19 23 23 C 1.38813 * 120.00121 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00063 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99971 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47210 * 89.99972 * 25 23 21 27 27 H 1.48498 * 109.46959 * 210.00226 * 25 23 21 28 28 H 1.48500 * 109.47250 * 329.99775 * 25 23 21 29 29 H 1.08998 * 109.46797 * 303.86466 * 1 2 3 30 30 H 1.09000 * 109.47171 * 63.87139 * 1 2 3 31 31 H 1.09004 * 109.46460 * 183.87132 * 1 2 3 32 32 H 1.09003 * 109.46575 * 55.00042 * 4 2 1 33 33 H 1.08993 * 109.47142 * 174.99957 * 4 2 1 34 34 H 1.08007 * 119.99076 * 0.02562 * 6 5 4 35 35 H 1.07998 * 119.99086 * 180.23110 * 7 6 5 36 36 H 1.07997 * 119.99157 * 179.76435 * 8 7 6 37 37 H 1.07996 * 120.00656 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47297 * 94.89686 * 15 14 12 39 39 H 1.09001 * 109.47124 * 214.89375 * 15 14 12 40 40 H 1.09000 * 109.47650 * 334.89283 * 15 14 12 41 41 H 1.08994 * 109.47384 * 179.97438 * 18 16 14 42 42 H 1.08999 * 109.47026 * 299.99757 * 18 16 14 43 43 H 1.08999 * 109.47115 * 59.99918 * 18 16 14 44 44 H 1.08996 * 109.47399 * 175.00431 * 19 16 14 45 45 H 1.09001 * 109.47379 * 295.00181 * 19 16 14 46 46 H 0.97000 * 119.99877 * 0.02562 * 20 19 16 47 47 H 0.97003 * 120.00068 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 6 2.5262 0.9551 3.0433 7 6 2.1590 1.6725 4.1662 8 6 0.9104 1.4844 4.7295 9 6 0.0269 0.5830 4.1669 10 6 0.3921 -0.1317 3.0396 11 17 -0.7174 -1.2639 2.3320 12 6 2.0324 -0.7103 -1.2306 13 8 2.6436 -1.7522 -1.1223 14 7 1.7976 -0.1905 -2.4517 15 6 2.2329 -0.9112 -3.6506 16 6 1.1072 1.0952 -2.5802 17 1 0.7559 1.4185 -1.6003 18 6 2.0731 2.1386 -3.1453 19 6 -0.0865 0.9409 -3.5246 20 7 -0.9508 -0.1410 -3.0466 21 6 -2.0891 -0.4636 -3.7361 22 1 -2.3495 0.0794 -4.6326 23 6 -2.9083 -1.4884 -3.2828 24 7 -4.0021 -1.7988 -3.9459 25 14 -2.4583 -2.4271 -1.7318 26 1 -3.0648 -1.7566 -0.5538 27 1 -2.9710 -3.8174 -1.8284 28 1 -0.9813 -2.4537 -1.5802 29 1 -0.3633 0.5726 0.8533 30 1 -0.3633 0.4526 -0.9226 31 1 -0.3632 -1.0254 0.0694 32 1 1.6055 -1.7199 1.2950 33 1 3.1264 -0.7994 1.2054 34 1 3.5033 1.0994 2.6061 35 1 2.8492 2.3769 4.6064 36 1 0.6253 2.0424 5.6091 37 1 -0.9485 0.4364 4.6068 38 1 1.4080 -1.5129 -4.0324 39 1 2.5436 -0.1957 -4.4119 40 1 3.0710 -1.5614 -3.3995 41 1 1.5593 3.0950 -3.2413 42 1 2.9235 2.2485 -2.4724 43 1 2.4245 1.8153 -4.1252 44 1 -0.6516 1.8726 -3.5512 45 1 0.2712 0.7043 -4.5267 46 1 -0.7172 -0.6285 -2.2412 47 1 -4.5743 -2.5152 -3.6293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714775375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:37 Heat of formation + Delta-G solvation = -13.468283 kcal Electronic energy + Delta-G solvation = -28714.899905 eV Core-core repulsion = 24923.541167 eV Total energy + Delta-G solvation = -3791.358739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66180 -40.34000 -38.31168 -37.48249 -36.16705 -35.85917 -33.49563 -32.25279 -31.93856 -31.58309 -28.28560 -27.90022 -27.58493 -24.68735 -24.14511 -23.57945 -22.64239 -21.79622 -20.36121 -19.31587 -18.65860 -17.77601 -17.13072 -16.83659 -16.71445 -16.51353 -16.21319 -15.82634 -15.61170 -15.15264 -15.10498 -14.81310 -14.73096 -14.25995 -13.97285 -13.89305 -13.80208 -13.63085 -13.46745 -13.24394 -13.11922 -13.01223 -12.92557 -12.75568 -12.54754 -12.43023 -12.38180 -12.27068 -12.07293 -11.96365 -11.84357 -11.69905 -11.26634 -11.06769 -10.74516 -9.85098 -9.69379 -9.60401 -9.32695 -8.11392 -5.40439 0.18249 0.31153 1.17905 1.21323 1.25130 1.27076 1.51666 2.00321 2.34360 2.68026 3.21033 3.29438 3.54062 3.68662 3.78084 3.87772 3.91410 3.96367 4.15457 4.17805 4.20795 4.34998 4.38464 4.43102 4.46454 4.60124 4.62240 4.68414 4.72898 4.78867 4.83791 4.86290 4.94634 4.97001 4.99490 5.06273 5.10763 5.20198 5.32211 5.34105 5.46616 5.50112 5.53914 5.72688 5.90367 6.14397 6.35390 7.02199 7.09134 7.80938 7.96200 9.10401 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010921 B = 0.004996 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.142385 B = 5603.279823 C = 7052.320975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 H 0.129 0.871 4 C -0.061 4.061 5 C -0.081 4.081 6 C -0.104 4.104 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.119 4.119 10 C -0.053 4.053 11 Cl -0.092 7.092 12 C 0.510 3.490 13 O -0.582 6.582 14 N -0.599 5.599 15 C 0.086 3.914 16 C 0.111 3.889 17 H 0.109 0.891 18 C -0.150 4.150 19 C 0.137 3.863 20 N -0.760 5.760 21 C -0.219 4.219 22 H 0.070 0.930 23 C -0.049 4.049 24 N -0.976 5.976 25 Si 0.919 3.081 26 H -0.270 1.270 27 H -0.300 1.300 28 H -0.272 1.272 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.031 0.969 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.034 0.966 46 H 0.367 0.633 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.501 13.279 16.859 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.112 4.112 3 H 0.147 0.853 4 C -0.098 4.098 5 C -0.082 4.082 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.126 4.126 9 C -0.138 4.138 10 C -0.079 4.079 11 Cl -0.064 7.064 12 C 0.299 3.701 13 O -0.462 6.462 14 N -0.331 5.331 15 C -0.057 4.057 16 C 0.008 3.992 17 H 0.127 0.873 18 C -0.208 4.208 19 C 0.010 3.990 20 N -0.407 5.407 21 C -0.351 4.351 22 H 0.088 0.912 23 C -0.241 4.241 24 N -0.628 5.628 25 Si 0.749 3.251 26 H -0.196 1.196 27 H -0.227 1.227 28 H -0.198 1.198 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.170 0.830 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.050 0.950 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.202 0.798 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.576 12.664 16.651 27.323 hybrid contribution -0.837 -1.700 0.290 1.917 sum 16.739 10.964 16.940 26.218 Atomic orbital electron populations 1.22652 0.93723 1.02313 1.03944 1.21234 0.96669 1.01879 0.91412 0.85318 1.20357 1.02157 0.97669 0.89645 1.19722 0.92748 0.98709 0.97016 1.21325 0.99713 0.94772 0.96359 1.21640 0.96839 0.98942 0.95049 1.21489 0.93453 0.97100 1.00570 1.21297 1.01561 0.96625 0.94312 1.21126 0.92017 0.96927 0.97859 1.98409 1.62995 1.61575 1.83387 1.21093 0.78535 0.84876 0.85598 1.90628 1.43421 1.25071 1.87121 1.47918 1.56991 1.22311 1.05847 1.21583 0.99324 0.97506 0.87269 1.21929 0.92304 0.83169 1.01768 0.87315 1.22063 0.98888 0.97940 1.01944 1.21298 0.90141 0.91147 0.96381 1.42975 1.25726 1.41127 1.30902 1.19104 0.97685 1.12406 1.05872 0.91166 1.25148 0.97469 1.00481 1.00992 1.69808 1.16250 1.34253 1.42448 0.86005 0.77907 0.78680 0.82542 1.19553 1.22715 1.19801 0.89703 0.91102 0.94161 0.92368 0.89056 0.82986 0.82138 0.82348 0.84387 0.94984 0.88432 0.91140 0.89095 0.90679 0.91592 0.92923 0.94786 0.79785 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 6.04 71.98 0.43 -5.01 16 2 C -0.09 -2.48 1.86 -11.54 -0.02 -2.50 16 3 H 0.13 2.58 7.52 -2.39 -0.02 2.56 16 4 C -0.06 -1.58 3.93 29.85 0.12 -1.46 16 5 C -0.08 -1.76 4.86 -19.84 -0.10 -1.85 16 6 C -0.10 -1.56 9.68 22.26 0.22 -1.34 16 7 C -0.11 -1.23 10.05 22.27 0.22 -1.00 16 8 C -0.11 -1.39 10.05 22.26 0.22 -1.16 16 9 C -0.12 -2.21 9.83 22.29 0.22 -1.99 16 10 C -0.05 -1.26 5.20 22.33 0.12 -1.14 16 11 Cl -0.09 -2.81 23.06 -2.72 -0.06 -2.87 16 12 C 0.51 17.08 7.00 87.66 0.61 17.69 16 13 O -0.58 -23.36 15.48 -3.03 -0.05 -23.40 16 14 N -0.60 -18.44 2.20 -822.60 -1.81 -20.25 16 15 C 0.09 2.61 9.44 127.77 1.21 3.82 16 16 C 0.11 2.90 2.07 44.99 0.09 3.00 16 17 H 0.11 2.68 4.20 -2.39 -0.01 2.67 16 18 C -0.15 -2.57 9.28 71.98 0.67 -1.91 16 19 C 0.14 4.73 5.34 86.38 0.46 5.19 16 20 N -0.76 -35.24 4.70 -343.47 -1.61 -36.85 16 21 C -0.22 -12.51 10.47 84.03 0.88 -11.63 16 22 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 23 C -0.05 -2.97 5.50 84.86 0.47 -2.50 16 24 N -0.98 -63.73 13.97 21.65 0.30 -63.43 16 25 Si 0.92 49.19 26.89 68.60 1.84 51.04 16 26 H -0.27 -13.87 7.11 99.48 0.71 -13.16 16 27 H -0.30 -16.40 7.11 99.48 0.71 -15.70 16 28 H -0.27 -14.31 6.16 99.48 0.61 -13.70 16 29 H 0.08 2.45 5.68 -2.39 -0.01 2.44 16 30 H 0.07 2.44 3.29 -2.39 -0.01 2.43 16 31 H 0.04 1.54 5.15 -2.38 -0.01 1.53 16 32 H 0.06 1.86 7.13 -2.39 -0.02 1.84 16 33 H 0.09 2.18 7.95 -2.39 -0.02 2.16 16 34 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 39 H 0.10 2.28 6.81 -2.39 -0.02 2.27 16 40 H 0.07 2.17 7.25 -2.39 -0.02 2.15 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.11 6.95 -2.39 -0.02 1.09 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.03 1.19 7.71 -2.39 -0.02 1.17 16 46 H 0.37 17.01 2.77 -92.71 -0.26 16.75 16 47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -77.68 370.83 5.07 -72.61 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.64 Total: 26.96 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 5.82 Total: -3.80 kcal Atomic # 7 Polarization: -117.40 SS G_CDS: -3.12 Total: -120.53 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.84 Total: 51.04 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.06 Total: -2.87 kcal Total: -77.68 5.07 -72.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714775375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.144 kcal (2) G-P(sol) polarization free energy of solvation -77.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds