Wall clock time and date at job start Tue Mar 31 2020 21:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47118 * 2 1 4 4 C 1.53002 * 109.47467 * 239.99893 * 2 1 3 5 5 N 1.46500 * 109.46955 * 64.99842 * 4 2 1 6 6 C 1.36932 * 119.99931 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00056 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00217 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47250 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47028 * 119.99954 * 10 8 6 13 13 H 1.48503 * 109.47494 * 239.99910 * 10 8 6 14 14 C 1.53005 * 109.47144 * 119.99672 * 2 1 3 15 15 N 1.46497 * 109.47277 * 294.99775 * 14 2 1 16 16 C 1.34774 * 120.00188 * 179.97438 * 15 14 2 17 17 O 1.21283 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00271 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.46884 * 294.50969 * 18 16 15 20 20 C 1.53001 * 109.47199 * 54.50981 * 18 16 15 21 21 C 1.50698 * 109.47081 * 174.51035 * 18 16 15 22 22 C 1.38262 * 119.99656 * 294.11083 * 21 18 16 23 23 C 1.38218 * 120.02459 * 179.77099 * 22 21 18 24 24 C 1.38230 * 120.01820 * 0.50592 * 23 22 21 25 25 C 1.38332 * 119.98160 * 359.74756 * 24 23 22 26 26 Cl 1.73606 * 120.01072 * 180.02562 * 25 24 23 27 27 C 1.38198 * 119.99092 * 114.39146 * 21 18 16 28 28 H 1.08996 * 109.47167 * 299.99682 * 1 2 3 29 29 H 1.08993 * 109.47291 * 60.00403 * 1 2 3 30 30 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47608 * 185.00033 * 4 2 1 32 32 H 1.08996 * 109.46922 * 304.99684 * 4 2 1 33 33 H 0.96994 * 120.00259 * 359.97438 * 5 4 2 34 34 H 0.96995 * 120.00288 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47068 * 55.00746 * 14 2 1 36 36 H 1.09008 * 109.47008 * 174.99957 * 14 2 1 37 37 H 0.97000 * 120.00073 * 0.02562 * 15 14 2 38 38 H 1.09002 * 109.47148 * 60.00501 * 19 18 16 39 39 H 1.09001 * 109.46916 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.47406 * 299.99933 * 19 18 16 41 41 H 1.09001 * 109.46965 * 59.99915 * 20 18 16 42 42 H 1.09001 * 109.47212 * 180.02562 * 20 18 16 43 43 H 1.08998 * 109.47047 * 300.00115 * 20 18 16 44 44 H 1.07995 * 119.98177 * 359.97438 * 22 21 18 45 45 H 1.08003 * 119.98789 * 180.25489 * 23 22 21 46 46 H 1.07996 * 120.00830 * 179.77333 * 24 23 22 47 47 H 1.08000 * 120.00709 * 359.94935 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0011 -0.4208 -3.6855 7 1 2.5622 -1.3382 -3.7864 8 6 1.6335 0.2957 -4.8161 9 7 0.9492 1.4134 -4.6932 10 14 2.1097 -0.3262 -6.5119 11 1 2.8697 -1.5949 -6.3785 12 1 0.8830 -0.5665 -7.3135 13 1 2.9545 0.6883 -7.1920 14 6 2.0400 -0.7212 1.2493 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4134 3.6660 17 8 2.6256 -1.4436 3.7793 18 6 1.5965 0.3646 4.8933 19 6 2.3156 1.7151 4.8972 20 6 0.0836 0.5924 4.8832 21 6 1.9794 -0.4119 6.1268 22 6 1.3600 -1.6161 6.4055 23 6 1.7140 -2.3311 7.5342 24 6 2.6802 -1.8375 8.3906 25 6 3.2966 -0.6301 8.1151 26 17 4.5106 -0.0097 9.1898 27 6 2.9454 0.0828 6.9823 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1263 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.1482 0.8589 -2.3518 34 1 0.6920 1.9139 -5.4832 35 1 1.6055 -1.7198 1.2952 36 1 3.1264 -0.7994 1.2056 37 1 1.1483 0.8592 2.3518 38 1 2.0386 2.2768 4.0050 39 1 2.0266 2.2781 5.7847 40 1 3.3934 1.5529 4.9044 41 1 -0.4287 -0.3698 4.8804 42 1 -0.2050 1.1555 5.7707 43 1 -0.1933 1.1540 3.9910 44 1 0.6016 -1.9998 5.7392 45 1 1.2327 -3.2738 7.7491 46 1 2.9542 -2.3945 9.2744 47 1 3.4266 1.0253 6.7665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715251891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:51 Heat of formation + Delta-G solvation = -25.095619 kcal Electronic energy + Delta-G solvation = -26500.115951 eV Core-core repulsion = 22708.253013 eV Total energy + Delta-G solvation = -3791.862938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92517 -39.12941 -37.05050 -36.67664 -35.49793 -34.37317 -32.46572 -31.23778 -30.31712 -29.79710 -27.81929 -26.61773 -25.47244 -24.28116 -22.79759 -22.62834 -21.69958 -20.29577 -19.41127 -17.83416 -17.18564 -16.76641 -16.19884 -15.82469 -15.46595 -15.36435 -14.71149 -14.44523 -14.36641 -14.18650 -14.12551 -13.66534 -13.64344 -13.13571 -13.00339 -12.66917 -12.63628 -12.51245 -12.29072 -12.25023 -12.13896 -12.05433 -11.74005 -11.57672 -11.24768 -11.09630 -11.03010 -10.93757 -10.72963 -10.59086 -10.43815 -10.05329 -9.82036 -9.67372 -9.20948 -9.05877 -8.93925 -8.89986 -6.94153 -5.79050 -3.07377 0.87130 0.95259 1.82037 2.54232 3.01918 3.42232 3.43553 3.48469 3.50353 4.02357 4.33908 4.50826 4.57541 4.61049 4.64877 4.75181 4.88776 5.02464 5.08754 5.17368 5.19351 5.29799 5.31119 5.34695 5.36350 5.45189 5.56066 5.56510 5.69778 5.73153 5.78501 5.90589 5.93167 5.96999 6.03478 6.08319 6.19373 6.21223 6.36025 6.45266 6.47512 6.62356 6.74817 6.84102 7.43307 7.69460 8.14154 8.40139 9.51556 10.08641 10.43410 11.43998 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027024 B = 0.001820 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.874954 B =15380.237350 C =15472.030305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.071 0.929 8 C -0.015 4.015 9 N -0.934 5.934 10 Si 0.907 3.093 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.292 1.292 14 C 0.127 3.873 15 N -0.721 5.721 16 C 0.520 3.480 17 O -0.532 6.532 18 C -0.043 4.043 19 C -0.146 4.146 20 C -0.141 4.141 21 C -0.043 4.043 22 C -0.088 4.088 23 C -0.106 4.106 24 C -0.113 4.113 25 C -0.035 4.035 26 Cl -0.075 7.075 27 C -0.106 4.106 28 H 0.041 0.959 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.384 0.616 34 H 0.254 0.746 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.967 -0.782 29.662 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.369 4.369 7 H 0.089 0.911 8 C -0.211 4.211 9 N -0.583 5.583 10 Si 0.738 3.262 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.003 3.997 15 N -0.373 5.373 16 C 0.305 3.695 17 O -0.408 6.408 18 C -0.046 4.046 19 C -0.204 4.204 20 C -0.198 4.198 21 C -0.044 4.044 22 C -0.106 4.106 23 C -0.125 4.125 24 C -0.131 4.131 25 C -0.061 4.061 26 Cl -0.046 7.046 27 C -0.124 4.124 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.218 0.782 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.143 0.857 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.320 -1.592 29.680 29.725 hybrid contribution 0.002 0.390 -0.986 1.061 sum -0.318 -1.203 28.694 28.721 Atomic orbital electron populations 1.21787 0.94668 1.01933 1.01459 1.21551 0.96697 1.00489 0.94192 0.90551 1.20574 0.96622 0.94205 0.85385 1.42340 1.66914 1.27687 1.00592 1.19286 1.28556 1.05424 0.83644 0.91096 1.24739 1.01047 0.97429 0.97880 1.69662 1.43610 1.16662 1.28376 0.86108 0.77593 0.77846 0.84604 1.20538 1.21881 1.21877 1.21428 1.00157 0.95245 0.82866 1.46044 1.57595 1.27884 1.05771 1.20247 0.79519 0.85495 0.84212 1.90733 1.39334 1.24176 1.86528 1.19737 0.98063 0.95773 0.91053 1.21982 1.00902 0.94045 1.03441 1.21930 0.91646 1.02920 1.03307 1.19216 0.95855 0.95042 0.94273 1.21041 0.99288 0.93753 0.96501 1.21069 0.97198 0.99897 0.94304 1.21043 0.96900 0.94602 1.00587 1.20843 0.95089 0.96275 0.93932 1.98369 1.54705 1.87225 1.64339 1.21011 0.97607 1.00690 0.93112 0.93956 0.91136 0.92820 0.96134 0.96011 0.78217 0.93582 0.91345 0.91368 0.76531 0.91180 0.90798 0.91427 0.91592 0.90982 0.91286 0.85660 0.85045 0.85099 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.94 37.15 0.33 -1.65 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.85 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.16 3.13 5.65 -4.04 -0.02 3.10 16 5 N -0.73 -18.06 5.33 -59.91 -0.32 -18.38 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 8 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 15 N -0.72 -7.80 5.11 -60.29 -0.31 -8.11 16 16 C 0.52 6.14 6.35 -10.99 -0.07 6.07 16 17 O -0.53 -8.42 15.55 5.56 0.09 -8.33 16 18 C -0.04 -0.37 0.72 -156.81 -0.11 -0.48 16 19 C -0.15 -1.02 7.11 37.16 0.26 -0.75 16 20 C -0.14 -0.91 8.07 37.16 0.30 -0.61 16 21 C -0.04 -0.42 4.23 -104.63 -0.44 -0.86 16 22 C -0.09 -0.83 8.38 -39.58 -0.33 -1.17 16 23 C -0.11 -0.90 10.04 -39.59 -0.40 -1.29 16 24 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 25 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 26 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.16 16 27 C -0.11 -0.99 8.78 -39.55 -0.35 -1.34 16 28 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 29 H 0.07 1.18 7.18 -51.93 -0.37 0.80 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.38 9.84 6.85 -40.82 -0.28 9.56 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.40 3.45 6.57 -40.82 -0.27 3.18 16 38 H 0.07 0.42 7.96 -51.93 -0.41 0.01 16 39 H 0.07 0.40 7.78 -51.93 -0.40 0.00 16 40 H 0.07 0.53 7.25 -51.93 -0.38 0.15 16 41 H 0.07 0.45 7.08 -51.93 -0.37 0.08 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.38 7.27 -51.93 -0.38 0.00 16 44 H 0.13 1.12 7.23 -52.49 -0.38 0.74 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.14 1.11 5.91 -52.49 -0.31 0.80 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -32.74 393.83 -9.64 -42.38 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.27 Total: 6.95 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.96 Total: -8.41 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.10 Total: -53.68 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.74 -9.64 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715251891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.282 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds