Wall clock time and date at job start Tue Mar 31 2020 21:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47118 * 2 1 4 4 C 1.53002 * 109.47467 * 239.99893 * 2 1 3 5 5 N 1.46500 * 109.46955 * 64.99842 * 4 2 1 6 6 C 1.36932 * 119.99931 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99955 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00160 * 179.97438 * 6 5 4 9 9 N 1.31620 * 120.00056 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00217 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47250 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47028 * 119.99954 * 10 8 6 13 13 H 1.48503 * 109.47494 * 239.99910 * 10 8 6 14 14 C 1.53005 * 109.47144 * 119.99672 * 2 1 3 15 15 N 1.46497 * 109.47277 * 294.99775 * 14 2 1 16 16 C 1.34774 * 120.00188 * 179.97438 * 15 14 2 17 17 O 1.21283 * 119.99804 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00271 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.46884 * 294.50969 * 18 16 15 20 20 C 1.53001 * 109.47199 * 54.50981 * 18 16 15 21 21 C 1.50698 * 109.47081 * 174.51035 * 18 16 15 22 22 C 1.38262 * 119.99656 * 294.11083 * 21 18 16 23 23 C 1.38218 * 120.02459 * 179.77099 * 22 21 18 24 24 C 1.38230 * 120.01820 * 0.50592 * 23 22 21 25 25 C 1.38332 * 119.98160 * 359.74756 * 24 23 22 26 26 Cl 1.73606 * 120.01072 * 180.02562 * 25 24 23 27 27 C 1.38198 * 119.99092 * 114.39146 * 21 18 16 28 28 H 1.08996 * 109.47167 * 299.99682 * 1 2 3 29 29 H 1.08993 * 109.47291 * 60.00403 * 1 2 3 30 30 H 1.09004 * 109.47064 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47608 * 185.00033 * 4 2 1 32 32 H 1.08996 * 109.46922 * 304.99684 * 4 2 1 33 33 H 0.96994 * 120.00259 * 359.97438 * 5 4 2 34 34 H 0.96995 * 120.00288 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47068 * 55.00746 * 14 2 1 36 36 H 1.09008 * 109.47008 * 174.99957 * 14 2 1 37 37 H 0.97000 * 120.00073 * 0.02562 * 15 14 2 38 38 H 1.09002 * 109.47148 * 60.00501 * 19 18 16 39 39 H 1.09001 * 109.46916 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.47406 * 299.99933 * 19 18 16 41 41 H 1.09001 * 109.46965 * 59.99915 * 20 18 16 42 42 H 1.09001 * 109.47212 * 180.02562 * 20 18 16 43 43 H 1.08998 * 109.47047 * 300.00115 * 20 18 16 44 44 H 1.07995 * 119.98177 * 359.97438 * 22 21 18 45 45 H 1.08003 * 119.98789 * 180.25489 * 23 22 21 46 46 H 1.07996 * 120.00830 * 179.77333 * 24 23 22 47 47 H 1.08000 * 120.00709 * 359.94935 * 27 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0353 -2.4424 6 6 2.0011 -0.4208 -3.6855 7 1 2.5622 -1.3382 -3.7864 8 6 1.6335 0.2957 -4.8161 9 7 0.9492 1.4134 -4.6932 10 14 2.1097 -0.3262 -6.5119 11 1 2.8697 -1.5949 -6.3785 12 1 0.8830 -0.5665 -7.3135 13 1 2.9545 0.6883 -7.1920 14 6 2.0400 -0.7212 1.2493 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4134 3.6660 17 8 2.6256 -1.4436 3.7793 18 6 1.5965 0.3646 4.8933 19 6 2.3156 1.7151 4.8972 20 6 0.0836 0.5924 4.8832 21 6 1.9794 -0.4119 6.1268 22 6 1.3600 -1.6161 6.4055 23 6 1.7140 -2.3311 7.5342 24 6 2.6802 -1.8375 8.3906 25 6 3.2966 -0.6301 8.1151 26 17 4.5106 -0.0097 9.1898 27 6 2.9454 0.0828 6.9823 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1263 -0.7995 -1.2056 32 1 1.6055 -1.7198 -1.2951 33 1 1.1482 0.8589 -2.3518 34 1 0.6920 1.9139 -5.4832 35 1 1.6055 -1.7198 1.2952 36 1 3.1264 -0.7994 1.2056 37 1 1.1483 0.8592 2.3518 38 1 2.0386 2.2768 4.0050 39 1 2.0266 2.2781 5.7847 40 1 3.3934 1.5529 4.9044 41 1 -0.4287 -0.3698 4.8804 42 1 -0.2050 1.1555 5.7707 43 1 -0.1933 1.1540 3.9910 44 1 0.6016 -1.9998 5.7392 45 1 1.2327 -3.2738 7.7491 46 1 2.9542 -2.3945 9.2744 47 1 3.4266 1.0253 6.7665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715251891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:50 Heat of formation + Delta-G solvation = -44.171813 kcal Electronic energy + Delta-G solvation = -26500.943157 eV Core-core repulsion = 22708.253013 eV Total energy + Delta-G solvation = -3792.690144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72182 -39.94606 -38.26259 -37.49089 -36.23942 -35.93102 -34.01638 -31.96489 -31.83467 -30.67597 -28.34417 -27.78294 -27.11807 -25.14321 -24.32433 -23.33018 -22.68245 -21.49555 -20.41200 -19.19086 -18.43480 -17.68664 -17.25398 -16.62643 -16.58619 -16.30477 -16.09602 -15.57276 -15.42345 -15.32143 -15.05253 -14.75792 -14.67522 -14.33414 -14.19775 -13.77234 -13.57346 -13.34989 -13.30092 -13.08144 -12.95550 -12.83119 -12.81759 -12.73630 -12.42024 -12.23475 -12.15912 -12.12754 -11.99383 -11.86300 -11.70443 -11.67297 -11.62408 -10.95686 -10.74321 -10.07826 -9.87904 -9.62310 -8.99278 -7.95902 -5.23863 0.18833 0.28861 1.14027 1.47790 1.47839 1.58142 1.63147 2.13826 2.56082 2.72178 3.37411 3.37932 3.68866 3.74036 3.86019 3.97103 3.98667 4.01957 4.09300 4.14604 4.24284 4.35446 4.47213 4.55484 4.67948 4.71202 4.73144 4.75256 4.80290 4.83513 4.88577 4.94867 4.98519 5.06124 5.13488 5.18696 5.23503 5.26782 5.34467 5.39070 5.42774 5.49804 5.50919 5.53455 5.83138 6.27203 6.55512 7.24228 7.34094 8.09257 8.33698 9.27625 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027024 B = 0.001820 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.874954 B =15380.237350 C =15472.030305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.079 0.921 4 C 0.156 3.844 5 N -0.741 5.741 6 C -0.245 4.245 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.967 5.967 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.293 1.293 14 C 0.139 3.861 15 N -0.710 5.710 16 C 0.520 3.480 17 O -0.576 6.576 18 C -0.035 4.035 19 C -0.147 4.147 20 C -0.140 4.140 21 C -0.055 4.055 22 C -0.102 4.102 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.047 4.047 26 Cl -0.074 7.074 27 C -0.115 4.115 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.153 0.847 46 H 0.147 0.853 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 -0.642 30.792 30.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.097 0.903 4 C 0.029 3.971 5 N -0.384 5.384 6 C -0.377 4.377 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.015 3.985 15 N -0.362 5.362 16 C 0.307 3.693 17 O -0.455 6.455 18 C -0.039 4.039 19 C -0.204 4.204 20 C -0.197 4.197 21 C -0.056 4.056 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.074 4.074 26 Cl -0.045 7.045 27 C -0.134 4.134 28 H 0.097 0.903 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.210 0.790 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.251 0.749 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.145 0.855 45 H 0.170 0.830 46 H 0.165 0.835 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.734 -1.451 30.837 30.880 hybrid contribution 0.161 0.293 -1.264 1.307 sum -0.573 -1.159 29.573 29.601 Atomic orbital electron populations 1.21724 0.93737 1.01943 1.01842 1.21325 0.97253 1.00020 0.92636 0.90277 1.20729 0.96445 0.94159 0.85781 1.42502 1.66763 1.27835 1.01299 1.19654 1.27736 1.05253 0.85092 0.90935 1.25529 1.01749 0.97942 1.01449 1.69800 1.45056 1.17867 1.29022 0.85097 0.77103 0.77587 0.80114 1.19311 1.21942 1.21989 1.21108 0.99328 0.95050 0.83048 1.45881 1.57397 1.28068 1.04892 1.20847 0.78428 0.85019 0.85030 1.90714 1.41336 1.26254 1.87152 1.19731 0.99650 0.95719 0.88762 1.22029 1.00042 0.93346 1.04985 1.21969 0.89763 1.03211 1.04735 1.19403 0.96072 0.95406 0.94725 1.21227 0.99666 0.94084 0.97033 1.21356 0.97026 1.00569 0.93823 1.21299 0.96689 0.94482 1.01172 1.21025 0.95396 0.96768 0.94178 1.98365 1.54676 1.87247 1.64260 1.21174 0.97697 1.01240 0.93250 0.90323 0.93919 0.93011 0.96441 0.96165 0.79018 0.93955 0.91870 0.92500 0.74911 0.89949 0.88986 0.92554 0.91968 0.89556 0.89879 0.85538 0.82964 0.83497 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.94 71.98 0.64 -2.96 16 2 C -0.09 -2.66 2.46 -10.79 -0.03 -2.69 16 3 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 4 C 0.16 6.06 5.65 86.38 0.49 6.55 16 5 N -0.74 -36.83 5.33 -343.46 -1.83 -38.66 16 6 C -0.25 -13.68 9.99 84.03 0.84 -12.84 16 7 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 9 N -0.97 -58.26 13.06 21.65 0.28 -57.97 16 10 Si 0.97 46.02 29.55 68.60 2.03 48.05 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 14 C 0.14 3.53 5.06 86.38 0.44 3.97 16 15 N -0.71 -14.09 5.11 -463.06 -2.37 -16.46 16 16 C 0.52 11.64 6.35 87.66 0.56 12.19 16 17 O -0.58 -18.06 15.55 -3.04 -0.05 -18.11 16 18 C -0.04 -0.55 0.72 -53.67 -0.04 -0.58 16 19 C -0.15 -1.73 7.11 71.98 0.51 -1.22 16 20 C -0.14 -1.46 8.07 71.98 0.58 -0.87 16 21 C -0.06 -1.01 4.23 -19.87 -0.08 -1.09 16 22 C -0.10 -1.85 8.38 22.27 0.19 -1.66 16 23 C -0.11 -1.72 10.04 22.26 0.22 -1.50 16 24 C -0.12 -1.88 9.83 22.29 0.22 -1.67 16 25 C -0.05 -0.85 6.32 22.32 0.14 -0.70 16 26 Cl -0.07 -1.25 28.96 -2.72 -0.08 -1.33 16 27 C -0.12 -2.06 8.78 22.29 0.20 -1.86 16 28 H 0.08 1.51 7.18 -2.39 -0.02 1.49 16 29 H 0.04 1.39 7.18 -2.39 -0.02 1.38 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.38 19.57 6.85 -92.71 -0.63 18.93 16 34 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.41 5.95 6.57 -92.71 -0.61 5.34 16 38 H 0.08 0.76 7.96 -2.39 -0.02 0.74 16 39 H 0.09 0.77 7.78 -2.39 -0.02 0.75 16 40 H 0.06 0.80 7.25 -2.39 -0.02 0.78 16 41 H 0.06 0.71 7.08 -2.39 -0.02 0.69 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.63 7.27 -2.39 -0.02 0.61 16 44 H 0.13 2.17 7.23 -2.91 -0.02 2.14 16 45 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 47 H 0.15 2.21 5.91 -2.91 -0.02 2.19 16 Total: -1.00 -70.61 393.83 3.06 -67.55 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.26 Total: 27.64 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 5.34 Total: -10.71 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -3.92 Total: -113.09 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.05 Total: -18.11 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -0.08 Total: -1.33 kcal Total: -70.61 3.06 -67.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715251891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.375 kcal (2) G-P(sol) polarization free energy of solvation -70.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds