Wall clock time and date at job start Tue Mar 31 2020 20:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47403 * 2 1 4 4 C 1.53002 * 109.47178 * 119.99574 * 2 1 3 5 5 N 1.46899 * 109.47427 * 174.99860 * 4 2 1 6 6 C 1.46903 * 111.00076 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46946 * 180.02562 * 6 5 4 8 8 C 1.39785 * 125.89215 * 95.00547 * 7 6 5 9 9 C 1.35529 * 107.89062 * 180.23930 * 8 7 6 10 10 N 1.34718 * 107.88937 * 359.70052 * 9 8 7 11 11 N 1.30705 * 125.89616 * 275.00369 * 7 6 5 12 12 C 1.47145 * 111.00908 * 179.97438 * 10 9 8 13 13 C 1.54372 * 105.56912 * 17.43384 * 12 10 9 14 14 C 1.51435 * 141.96617 * 180.86976 * 9 8 7 15 15 N 1.46498 * 109.47526 * 239.99696 * 2 1 3 16 16 C 1.34779 * 119.99826 * 84.99732 * 15 2 1 17 17 O 1.21272 * 120.00048 * 0.02562 * 16 15 2 18 18 C 1.50697 * 119.99557 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46824 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00076 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00152 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99890 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47302 * 60.00465 * 24 22 20 26 26 H 1.48506 * 109.47048 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47173 * 300.00168 * 24 22 20 28 28 H 1.09000 * 109.46673 * 60.00261 * 1 2 3 29 29 H 1.08997 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47189 * 300.00262 * 1 2 3 31 31 H 1.08998 * 109.47090 * 54.99975 * 4 2 1 32 32 H 1.09003 * 109.47437 * 295.00165 * 4 2 1 33 33 H 1.00904 * 110.99974 * 56.04872 * 5 4 2 34 34 H 1.08998 * 109.46547 * 60.00476 * 6 5 4 35 35 H 1.08997 * 109.47409 * 300.00440 * 6 5 4 36 36 H 1.08002 * 126.05114 * 359.96950 * 8 7 6 37 37 H 1.09001 * 110.22123 * 136.45711 * 12 10 9 38 38 H 1.08996 * 110.22640 * 258.32092 * 12 10 9 39 39 H 1.08998 * 110.97438 * 92.38030 * 13 12 10 40 40 H 1.08995 * 110.97095 * 216.14974 * 13 12 10 41 41 H 1.08993 * 110.64715 * 43.94011 * 14 9 8 42 42 H 1.09003 * 110.37735 * 281.39283 * 14 9 8 43 43 H 0.97006 * 120.00094 * 265.00327 * 15 2 1 44 44 H 1.08996 * 109.47757 * 300.00133 * 18 16 15 45 45 H 1.09002 * 109.47359 * 60.00319 * 18 16 15 46 46 H 0.96998 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.0304 -1.5147 2.3769 7 6 5.5318 -1.6033 2.2815 8 6 6.4432 -0.7086 2.8496 9 6 7.6921 -1.1300 2.5342 10 7 7.5766 -2.2534 1.7996 11 7 6.2064 -2.5298 1.6533 12 6 8.8994 -2.7721 1.4172 13 6 9.9038 -2.0875 2.3689 14 6 9.1532 -0.7876 2.7369 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8591 1.1584 -2.4115 18 6 2.6490 -0.7290 -3.5876 19 16 2.7107 0.4342 -4.9730 20 6 3.3124 -0.6314 -6.2406 21 1 3.5204 -1.6682 -6.0210 22 6 3.5182 -0.1387 -7.5219 23 7 3.2642 1.1247 -7.7897 24 14 4.1568 -1.2683 -8.8655 25 1 3.2054 -2.3914 -9.0617 26 1 4.2899 -0.5048 -10.1323 27 1 5.4834 -1.8065 -8.4708 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7197 1.2953 32 1 1.7517 -0.1582 2.1371 33 1 3.9280 0.0826 1.0825 34 1 3.6095 -2.5187 2.4311 35 1 3.7558 -0.9569 3.2722 36 1 6.1959 0.1663 3.4326 37 1 8.9325 -3.8536 1.5489 38 1 9.1214 -2.5119 0.3823 39 1 10.0816 -2.6987 3.2537 40 1 10.8392 -1.8660 1.8551 41 1 9.3442 -0.5175 3.7754 42 1 9.4487 0.0240 2.0720 43 1 2.2491 -1.6319 -1.1525 44 1 3.6481 -1.1215 -3.3985 45 1 1.9761 -1.5508 -3.8324 46 1 3.4077 1.4690 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716430096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:47 Heat of formation + Delta-G solvation = 48.141216 kcal Electronic energy + Delta-G solvation = -25847.430200 eV Core-core repulsion = 22093.079507 eV Total energy + Delta-G solvation = -3754.350693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.91843 -39.26954 -37.40523 -36.35974 -34.24362 -32.36233 -31.49342 -31.03941 -29.83574 -28.37925 -27.72944 -26.34982 -25.40949 -23.96627 -22.06089 -21.50159 -20.47373 -20.12130 -19.65770 -17.74647 -16.99371 -16.55726 -16.23832 -16.13662 -15.33497 -15.12104 -14.74795 -14.69861 -14.51443 -14.31308 -14.01045 -13.81513 -13.63609 -13.28600 -13.09376 -12.99820 -12.76281 -12.61542 -12.47024 -12.23525 -12.06712 -12.01483 -11.85054 -11.58754 -11.47975 -10.99050 -10.97469 -10.88969 -10.70301 -10.66842 -9.74491 -9.33553 -9.22006 -8.99666 -8.75101 -8.67453 -8.60217 -8.14475 -6.41026 -6.14954 -3.84197 1.65299 2.05300 2.48519 3.16093 3.27519 3.29199 3.31784 3.38915 3.65582 3.85584 4.05151 4.08528 4.25898 4.27551 4.36125 4.58535 4.74124 4.90030 4.96176 4.98553 5.07688 5.13929 5.19852 5.23723 5.28037 5.29988 5.34038 5.38974 5.41830 5.42057 5.54039 5.58340 5.66151 5.80722 5.91667 6.04029 6.10063 6.23076 6.29736 6.44406 6.60992 6.71725 6.89078 7.14123 7.63677 7.66193 7.97355 8.42152 8.82557 9.30223 10.92502 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.002605 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.864314 B =10744.656759 C =13369.331268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.085 0.915 4 C 0.053 3.947 5 N -0.679 5.679 6 C 0.145 3.855 7 C 0.078 3.922 8 C -0.255 4.255 9 C 0.059 3.941 10 N -0.392 5.392 11 N -0.250 5.250 12 C 0.128 3.872 13 C -0.131 4.131 14 C -0.067 4.067 15 N -0.719 5.719 16 C 0.534 3.466 17 O -0.526 6.526 18 C -0.152 4.152 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.071 0.929 22 C 0.073 3.927 23 N -0.869 5.869 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.348 0.652 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.143 0.857 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.401 0.599 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.715 -6.987 27.505 29.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.077 4.077 5 N -0.312 5.312 6 C 0.014 3.986 7 C -0.089 4.089 8 C -0.285 4.285 9 C -0.070 4.070 10 N -0.174 5.174 11 N -0.071 5.071 12 C 0.007 3.993 13 C -0.170 4.170 14 C -0.106 4.106 15 N -0.373 5.373 16 C 0.320 3.680 17 O -0.401 6.401 18 C -0.302 4.302 19 S 0.165 5.835 20 C -0.682 4.682 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.167 0.833 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.235 0.765 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.193 -6.727 26.063 28.136 hybrid contribution 0.857 -1.157 0.297 1.470 sum 9.050 -7.884 26.359 28.963 Atomic orbital electron populations 1.22154 0.95136 1.02132 1.02713 1.20829 0.93721 0.97390 0.84034 0.89739 1.22304 0.87752 1.01120 0.96516 1.60323 1.04969 1.26581 1.39297 1.20152 0.86144 1.00473 0.91785 1.22073 0.96081 0.93663 0.97107 1.20523 0.89609 1.05456 1.12883 1.22195 0.96479 0.91275 0.97044 1.50138 1.04677 1.21531 1.41061 1.77424 0.83398 1.23436 1.22823 1.22340 0.76384 1.00376 1.00185 1.22793 0.98127 0.96164 0.99920 1.20882 0.87398 0.98357 1.03951 1.45855 1.68541 1.14114 1.08774 1.20224 0.76732 0.87138 0.83873 1.90675 1.48965 1.15824 1.84625 1.23511 1.03678 1.04651 0.98389 1.85326 1.86292 1.13097 0.98800 1.22847 1.50834 0.98117 0.96401 0.91055 1.24982 0.95187 0.95521 0.97920 1.70013 1.45732 1.13199 1.21494 0.86239 0.79322 0.80050 0.79973 1.19960 1.20852 1.19990 0.91384 0.92467 0.92029 0.90239 0.93686 0.83333 0.89492 0.93035 0.83941 0.89070 0.89140 0.89536 0.87957 0.88799 0.88628 0.76454 0.89331 0.89466 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 2 C 0.15 1.75 2.81 -67.93 -0.19 1.56 16 3 H 0.08 1.17 7.58 -51.93 -0.39 0.78 16 4 C 0.05 0.47 5.24 -3.82 -0.02 0.45 16 5 N -0.68 -7.01 6.22 -115.05 -0.72 -7.72 16 6 C 0.15 1.35 6.24 -4.97 -0.03 1.32 16 7 C 0.08 0.91 6.72 -82.49 -0.55 0.36 16 8 C -0.25 -2.69 10.74 -39.97 -0.43 -3.12 16 9 C 0.06 0.58 7.49 -81.93 -0.61 -0.03 16 10 N -0.39 -4.48 4.85 -55.72 -0.27 -4.75 16 11 N -0.25 -3.47 12.70 33.64 0.43 -3.04 16 12 C 0.13 0.91 7.78 -2.97 -0.02 0.89 16 13 C -0.13 -0.52 7.17 -25.20 -0.18 -0.70 16 14 C -0.07 -0.37 6.85 -26.71 -0.18 -0.56 16 15 N -0.72 -10.44 4.80 -53.81 -0.26 -10.69 16 16 C 0.53 10.54 7.81 -10.99 -0.09 10.45 16 17 O -0.53 -12.30 15.52 5.56 0.09 -12.21 16 18 C -0.15 -3.28 6.16 36.00 0.22 -3.06 16 19 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 20 C -0.53 -15.74 9.50 30.94 0.29 -15.44 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 23 N -0.87 -26.82 13.22 55.49 0.73 -26.08 16 24 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.35 3.83 8.72 -39.29 -0.34 3.49 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.40 5.17 8.60 -40.82 -0.35 4.82 16 44 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 45 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 46 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -38.14 399.47 -10.15 -48.29 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -7.40 Total: 4.48 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.54 Total: -7.29 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: -0.08 Total: -52.29 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.14 -10.15 -48.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716430096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.427 kcal (2) G-P(sol) polarization free energy of solvation -38.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds