Wall clock time and date at job start Tue Mar 31 2020 20:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47403 * 2 1 4 4 C 1.53002 * 109.47178 * 119.99574 * 2 1 3 5 5 N 1.46899 * 109.47427 * 174.99860 * 4 2 1 6 6 C 1.46903 * 111.00076 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.46946 * 180.02562 * 6 5 4 8 8 C 1.39785 * 125.89215 * 95.00547 * 7 6 5 9 9 C 1.35529 * 107.89062 * 180.23930 * 8 7 6 10 10 N 1.34718 * 107.88937 * 359.70052 * 9 8 7 11 11 N 1.30705 * 125.89616 * 275.00369 * 7 6 5 12 12 C 1.47145 * 111.00908 * 179.97438 * 10 9 8 13 13 C 1.54372 * 105.56912 * 17.43384 * 12 10 9 14 14 C 1.51435 * 141.96617 * 180.86976 * 9 8 7 15 15 N 1.46498 * 109.47526 * 239.99696 * 2 1 3 16 16 C 1.34779 * 119.99826 * 84.99732 * 15 2 1 17 17 O 1.21272 * 120.00048 * 0.02562 * 16 15 2 18 18 C 1.50697 * 119.99557 * 180.02562 * 16 15 2 19 19 S 1.81001 * 109.46824 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00076 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00149 * 0.02562 * 20 19 18 22 22 C 1.38802 * 120.00152 * 179.97438 * 20 19 18 23 23 N 1.31627 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99890 * 179.97438 * 22 20 19 25 25 H 1.48491 * 109.47302 * 60.00465 * 24 22 20 26 26 H 1.48506 * 109.47048 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47173 * 300.00168 * 24 22 20 28 28 H 1.09000 * 109.46673 * 60.00261 * 1 2 3 29 29 H 1.08997 * 109.46841 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47189 * 300.00262 * 1 2 3 31 31 H 1.08998 * 109.47090 * 54.99975 * 4 2 1 32 32 H 1.09003 * 109.47437 * 295.00165 * 4 2 1 33 33 H 1.00904 * 110.99974 * 56.04872 * 5 4 2 34 34 H 1.08998 * 109.46547 * 60.00476 * 6 5 4 35 35 H 1.08997 * 109.47409 * 300.00440 * 6 5 4 36 36 H 1.08002 * 126.05114 * 359.96950 * 8 7 6 37 37 H 1.09001 * 110.22123 * 136.45711 * 12 10 9 38 38 H 1.08996 * 110.22640 * 258.32092 * 12 10 9 39 39 H 1.08998 * 110.97438 * 92.38030 * 13 12 10 40 40 H 1.08995 * 110.97095 * 216.14974 * 13 12 10 41 41 H 1.08993 * 110.64715 * 43.94011 * 14 9 8 42 42 H 1.09003 * 110.37735 * 281.39283 * 14 9 8 43 43 H 0.97006 * 120.00094 * 265.00327 * 15 2 1 44 44 H 1.08996 * 109.47757 * 300.00133 * 18 16 15 45 45 H 1.09002 * 109.47359 * 60.00319 * 18 16 15 46 46 H 0.96998 * 119.99993 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 4.0304 -1.5147 2.3769 7 6 5.5318 -1.6033 2.2815 8 6 6.4432 -0.7086 2.8496 9 6 7.6921 -1.1300 2.5342 10 7 7.5766 -2.2534 1.7996 11 7 6.2064 -2.5298 1.6533 12 6 8.8994 -2.7721 1.4172 13 6 9.9038 -2.0875 2.3689 14 6 9.1532 -0.7876 2.7369 15 7 2.0184 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8591 1.1584 -2.4115 18 6 2.6490 -0.7290 -3.5876 19 16 2.7107 0.4342 -4.9730 20 6 3.3124 -0.6314 -6.2406 21 1 3.5204 -1.6682 -6.0210 22 6 3.5182 -0.1387 -7.5219 23 7 3.2642 1.1247 -7.7897 24 14 4.1568 -1.2683 -8.8655 25 1 3.2054 -2.3914 -9.0617 26 1 4.2899 -0.5048 -10.1323 27 1 5.4834 -1.8065 -8.4708 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 -1.7197 1.2953 32 1 1.7517 -0.1582 2.1371 33 1 3.9280 0.0826 1.0825 34 1 3.6095 -2.5187 2.4311 35 1 3.7558 -0.9569 3.2722 36 1 6.1959 0.1663 3.4326 37 1 8.9325 -3.8536 1.5489 38 1 9.1214 -2.5119 0.3823 39 1 10.0816 -2.6987 3.2537 40 1 10.8392 -1.8660 1.8551 41 1 9.3442 -0.5175 3.7754 42 1 9.4487 0.0240 2.0720 43 1 2.2491 -1.6319 -1.1525 44 1 3.6481 -1.1215 -3.3985 45 1 1.9761 -1.5508 -3.8324 46 1 3.4077 1.4690 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716430096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:45 Heat of formation + Delta-G solvation = 19.215958 kcal Electronic energy + Delta-G solvation = -25848.684493 eV Core-core repulsion = 22093.079507 eV Total energy + Delta-G solvation = -3755.604986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.62931 -40.70360 -38.25926 -37.18772 -35.27310 -34.59614 -32.70117 -31.80023 -30.59296 -29.88940 -28.42628 -27.66585 -27.02000 -24.74868 -22.62311 -22.51767 -21.50621 -21.19025 -20.43168 -19.81889 -17.87881 -17.59847 -17.53347 -16.89091 -16.80713 -16.42014 -16.26527 -15.93391 -15.72360 -15.28526 -14.94066 -14.66612 -14.62015 -14.51835 -14.16199 -13.97744 -13.86450 -13.67416 -13.32395 -13.22598 -13.17817 -12.94686 -12.88531 -12.84887 -12.60354 -12.50927 -12.46603 -11.99112 -11.82939 -11.71884 -11.46249 -11.14202 -10.86744 -10.29462 -10.10182 -9.98739 -9.51332 -9.34757 -8.67052 -8.35421 -6.13438 0.89590 1.26565 1.41702 1.42412 1.45565 1.56648 1.69279 1.71831 2.26336 2.38787 2.98003 3.13712 3.26985 3.34621 3.60777 3.72714 3.83795 3.90060 4.05402 4.09208 4.18261 4.27813 4.33059 4.41047 4.46119 4.50479 4.54806 4.59113 4.64468 4.68658 4.77583 4.80854 4.82980 4.86356 4.98379 5.09438 5.10088 5.22291 5.30901 5.39916 5.62297 5.71929 5.94092 6.02099 6.18565 6.31497 6.62049 6.85323 7.05210 7.34502 8.73770 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008556 B = 0.002605 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3271.864314 B =10744.656759 C =13369.331268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.063 0.937 4 C 0.065 3.935 5 N -0.695 5.695 6 C 0.150 3.850 7 C 0.070 3.930 8 C -0.278 4.278 9 C 0.054 3.946 10 N -0.406 5.406 11 N -0.306 5.306 12 C 0.113 3.887 13 C -0.116 4.116 14 C -0.066 4.066 15 N -0.695 5.695 16 C 0.536 3.464 17 O -0.569 6.569 18 C -0.129 4.129 19 S -0.146 6.146 20 C -0.549 4.549 21 H 0.079 0.921 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.262 1.262 26 H -0.276 1.276 27 H -0.263 1.263 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.341 0.659 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.412 0.588 44 H 0.098 0.902 45 H 0.105 0.895 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -8.700 29.183 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.081 0.919 4 C -0.064 4.064 5 N -0.327 5.327 6 C 0.020 3.980 7 C -0.096 4.096 8 C -0.307 4.307 9 C -0.076 4.076 10 N -0.189 5.189 11 N -0.128 5.128 12 C -0.007 4.007 13 C -0.154 4.154 14 C -0.105 4.105 15 N -0.347 5.347 16 C 0.321 3.679 17 O -0.448 6.448 18 C -0.280 4.280 19 S 0.081 5.919 20 C -0.697 4.697 21 H 0.097 0.903 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.188 1.188 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.159 0.841 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.176 0.824 37 H 0.114 0.886 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.147 0.853 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.249 0.751 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.296 -8.488 27.792 30.510 hybrid contribution 0.522 -0.641 -0.096 0.833 sum 9.819 -9.129 27.696 30.770 Atomic orbital electron populations 1.22094 0.93970 1.03087 1.02373 1.21062 0.94582 0.96540 0.83991 0.91875 1.22242 0.86918 1.01900 0.95389 1.60304 1.05746 1.26307 1.40391 1.20194 0.84866 1.00713 0.92207 1.22507 0.97260 0.93366 0.96503 1.20866 0.89988 1.06160 1.13723 1.22970 0.98365 0.90527 0.95704 1.50519 1.04791 1.22317 1.41311 1.77277 0.85171 1.25380 1.24924 1.22725 0.75651 1.01181 1.01128 1.22844 0.97876 0.94942 0.99786 1.21077 0.84646 0.99311 1.05450 1.45690 1.66614 1.14432 1.08014 1.19914 0.76767 0.86536 0.84680 1.90662 1.51267 1.17554 1.85307 1.23355 1.04888 1.03192 0.96573 1.85464 1.86680 1.17250 1.02540 1.23171 1.51202 0.98358 0.96984 0.90309 1.26136 0.95020 0.97277 1.00677 1.70175 1.46755 1.15432 1.22334 0.85004 0.79026 0.77758 0.76198 1.18649 1.20053 1.18796 0.94818 0.90815 0.89291 0.88671 0.90962 0.84074 0.89389 0.90656 0.82382 0.88611 0.89333 0.88338 0.85272 0.86744 0.87848 0.75123 0.88361 0.87708 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.48 71.98 0.68 -2.52 16 2 C 0.14 3.25 2.81 44.99 0.13 3.38 16 3 H 0.06 1.75 7.58 -2.39 -0.02 1.73 16 4 C 0.06 0.98 5.24 86.30 0.45 1.43 16 5 N -0.70 -13.42 6.22 -517.92 -3.22 -16.64 16 6 C 0.15 2.59 6.24 85.56 0.53 3.12 16 7 C 0.07 1.63 6.72 43.10 0.29 1.92 16 8 C -0.28 -5.73 10.74 22.02 0.24 -5.49 16 9 C 0.05 1.02 7.49 41.72 0.31 1.34 16 10 N -0.41 -9.25 4.85 -330.20 -1.60 -10.85 16 11 N -0.31 -8.63 12.70 -47.50 -0.60 -9.23 16 12 C 0.11 1.52 7.78 86.72 0.67 2.19 16 13 C -0.12 -0.64 7.17 31.58 0.23 -0.42 16 14 C -0.07 -0.60 6.85 30.61 0.21 -0.39 16 15 N -0.69 -19.64 4.80 -442.55 -2.12 -21.76 16 16 C 0.54 21.39 7.81 87.66 0.68 22.08 16 17 O -0.57 -27.59 15.52 -3.00 -0.05 -27.64 16 18 C -0.13 -5.62 6.16 71.24 0.44 -5.18 16 19 S -0.15 -8.54 20.57 -56.49 -1.16 -9.70 16 20 C -0.55 -32.81 9.50 67.95 0.65 -32.16 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -57.37 13.22 21.65 0.29 -57.08 16 24 Si 1.00 44.99 29.55 68.60 2.03 47.02 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.34 7.32 8.72 -89.69 -0.78 6.54 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.41 9.97 8.60 -92.70 -0.80 9.17 16 44 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 45 H 0.10 4.17 8.14 -2.39 -0.02 4.15 16 46 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -87.23 399.47 -1.05 -88.28 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.59 Total: 27.03 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 5.98 Total: -9.42 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -7.26 Total: -115.56 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -87.23 -1.05 -88.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716430096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.498 kcal (2) G-P(sol) polarization free energy of solvation -87.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds