Wall clock time and date at job start Tue Mar 31 2020 21:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46604 * 2 1 4 4 C 1.52992 * 109.47158 * 240.00215 * 2 1 3 5 5 N 1.46905 * 109.47159 * 176.06014 * 4 2 1 6 6 C 1.46901 * 110.99599 * 72.90919 * 5 4 2 7 7 C 1.46897 * 111.00344 * 196.86060 * 5 4 2 8 8 H 1.09001 * 109.47469 * 300.00385 * 7 5 4 9 9 C 1.52996 * 109.47140 * 60.00243 * 7 5 4 10 10 C 1.50696 * 109.47485 * 180.02562 * 7 5 4 11 11 C 1.38390 * 120.00490 * 154.72266 * 10 7 5 12 12 N 1.32121 * 120.00006 * 179.78286 * 11 10 7 13 13 C 1.32155 * 119.99663 * 0.49931 * 12 11 10 14 14 C 1.38338 * 120.00532 * 359.73328 * 13 12 11 15 15 N 1.32127 * 119.99734 * 335.00475 * 10 7 5 16 16 N 1.46498 * 109.47001 * 120.00082 * 2 1 3 17 17 C 1.34782 * 119.99890 * 267.72179 * 16 2 1 18 18 O 1.21282 * 119.99967 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00039 * 180.02562 * 17 16 2 20 20 S 1.80992 * 109.47288 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00211 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99885 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99887 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00196 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99773 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47366 * 59.99547 * 25 23 21 27 27 H 1.48498 * 109.47312 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46852 * 299.99606 * 25 23 21 29 29 H 1.08992 * 109.47408 * 299.99724 * 1 2 3 30 30 H 1.08998 * 109.47081 * 60.00026 * 1 2 3 31 31 H 1.09002 * 109.46763 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47403 * 56.06749 * 4 2 1 33 33 H 1.09000 * 109.47456 * 296.05897 * 4 2 1 34 34 H 1.09002 * 109.47413 * 168.73376 * 6 5 4 35 35 H 1.09001 * 109.47059 * 288.73189 * 6 5 4 36 36 H 1.08998 * 109.47277 * 48.73281 * 6 5 4 37 37 H 1.09003 * 109.47307 * 59.99923 * 9 7 5 38 38 H 1.09000 * 109.47412 * 179.97438 * 9 7 5 39 39 H 1.09000 * 109.47275 * 300.00198 * 9 7 5 40 40 H 1.08005 * 119.99627 * 0.02568 * 11 10 7 41 41 H 1.08004 * 119.99834 * 179.71698 * 13 12 11 42 42 H 1.08004 * 120.00229 * 180.02562 * 14 13 12 43 43 H 0.96988 * 120.00044 * 87.72537 * 16 2 1 44 44 H 1.09006 * 109.46914 * 299.99955 * 19 17 16 45 45 H 1.08998 * 109.46964 * 59.99992 * 19 17 16 46 46 H 0.97008 * 120.00016 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5060 -0.6393 -1.2977 6 6 4.1159 -1.5181 -0.2909 7 6 4.0066 -0.9529 -2.6427 8 1 3.7038 -1.9635 -2.9167 9 6 3.4262 0.0437 -3.6481 10 6 5.5106 -0.8595 -2.6534 11 6 6.2422 -1.5804 -3.5809 12 7 7.5606 -1.4951 -3.5929 13 6 8.1812 -0.7290 -2.7129 14 6 7.4503 -0.0121 -1.7826 15 7 6.1312 -0.0936 -1.7736 16 7 2.0184 -0.6906 1.1961 17 6 2.2867 0.0095 2.3162 18 8 2.1235 1.2112 2.3339 19 6 2.7896 -0.7008 3.5464 20 16 3.0538 0.5026 4.8723 21 6 3.6223 -0.5695 6.1498 22 1 3.7115 -1.6298 5.9651 23 6 3.9565 -0.0511 7.3932 24 7 3.8482 1.2412 7.6183 25 14 4.5599 -1.1876 8.7474 26 1 5.7977 -1.8759 8.3011 27 1 4.8473 -0.3934 9.9688 28 1 3.5135 -2.1972 9.0490 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6203 -0.2496 -2.1378 33 1 1.7356 -1.7672 -1.2147 34 1 5.1874 -1.5940 -0.4759 35 1 3.9473 -1.1037 0.7031 36 1 3.6655 -2.5088 -0.3526 37 1 3.7290 1.0543 -3.3741 38 1 3.7980 -0.1887 -4.6460 39 1 2.3383 -0.0243 -3.6403 40 1 5.7351 -2.2097 -4.2974 41 1 9.2592 -0.6629 -2.7198 42 1 7.9575 0.6143 -1.0637 43 1 2.1486 -1.6516 1.1821 44 1 2.0533 -1.4380 3.8668 45 1 3.7300 -1.2022 3.3176 46 1 4.0821 1.6036 8.4872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716471187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:43 Heat of formation + Delta-G solvation = 32.995498 kcal Electronic energy + Delta-G solvation = -26946.038032 eV Core-core repulsion = 23191.030571 eV Total energy + Delta-G solvation = -3755.007460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50177 -39.66593 -38.08436 -35.39823 -34.22223 -32.52138 -32.39924 -31.51460 -30.35834 -28.55284 -27.10051 -25.45691 -25.28596 -24.90570 -24.01586 -21.56407 -20.69604 -20.20293 -17.92875 -17.79047 -17.25940 -16.62568 -16.48756 -15.92444 -15.81258 -15.24069 -15.05309 -14.78220 -14.70894 -14.35424 -14.04387 -13.70418 -13.50989 -13.14470 -13.00482 -12.82510 -12.65089 -12.56388 -12.39582 -12.03732 -11.94102 -11.80617 -11.69435 -11.49342 -11.45466 -11.10512 -11.02309 -11.01453 -10.92594 -10.73942 -9.79050 -9.55558 -9.28233 -9.25967 -9.03528 -8.78820 -8.37916 -8.19286 -6.45712 -6.18738 -3.88650 0.45531 0.88794 3.09487 3.20058 3.24874 3.29135 3.33918 3.37668 3.49810 3.67577 3.78585 3.96764 4.23277 4.26726 4.36492 4.64451 4.75827 4.83517 4.96290 4.99411 5.02000 5.14040 5.14834 5.16132 5.22166 5.24479 5.32972 5.38631 5.45906 5.48502 5.59063 5.64292 5.71589 5.86089 5.92814 6.01206 6.07232 6.12775 6.18615 6.21435 6.75030 6.79160 6.87248 7.04837 7.55220 7.61669 7.78855 8.37589 8.72533 9.26335 10.88578 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.002769 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.058716 B =10108.664160 C =11844.906736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.102 0.898 4 C 0.043 3.957 5 N -0.514 5.514 6 C 0.018 3.982 7 C 0.133 3.867 8 H 0.059 0.941 9 C -0.144 4.144 10 C 0.087 3.913 11 C 0.048 3.952 12 N -0.438 5.438 13 C 0.040 3.960 14 C 0.053 3.947 15 N -0.400 5.400 16 N -0.731 5.731 17 C 0.534 3.466 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.057 6.057 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.019 0.981 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.165 0.835 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.394 0.606 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -7.762 -25.691 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.120 0.880 4 C -0.086 4.086 5 N -0.237 5.237 6 C -0.130 4.130 7 C 0.023 3.977 8 H 0.077 0.923 9 C -0.202 4.202 10 C -0.054 4.054 11 C -0.113 4.113 12 N -0.153 5.153 13 C -0.119 4.119 14 C -0.107 4.107 15 N -0.115 5.115 16 N -0.386 5.386 17 C 0.320 3.680 18 O -0.388 6.388 19 C -0.305 4.305 20 S 0.169 5.831 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.189 0.811 43 H 0.228 0.772 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.624 -5.102 -25.423 25.937 hybrid contribution 0.584 -3.501 0.715 3.621 sum 1.209 -8.603 -24.708 26.191 Atomic orbital electron populations 1.22159 0.95337 1.01847 1.02735 1.20892 0.93007 0.98830 0.83077 0.87987 1.22634 0.87637 0.99228 0.99065 1.61832 1.05259 1.53998 1.02658 1.22777 0.99385 0.93161 0.97719 1.20480 0.87689 0.98332 0.91187 0.92349 1.21917 1.01147 1.00040 0.97088 1.22155 0.97348 0.93468 0.92449 1.23483 0.90655 0.98572 0.98559 1.68454 1.09752 1.15675 1.21396 1.23801 1.02096 0.93769 0.92247 1.23988 0.90706 0.97831 0.98165 1.68523 1.09338 1.13829 1.19782 1.46265 1.69298 1.10804 1.12270 1.20214 0.76572 0.87680 0.83565 1.90697 1.50763 1.14312 1.83018 1.23545 1.03444 1.04971 0.98503 1.85399 1.85979 1.08987 1.02708 1.22833 1.51348 0.95541 0.98704 0.91085 1.24977 0.95145 0.95502 0.97917 1.70010 1.45375 1.11318 1.23586 0.86244 0.79195 0.80033 0.80141 1.19970 1.20819 1.19985 0.91561 0.91855 0.92797 0.89003 0.94357 0.91939 0.89165 0.96280 0.91005 0.91979 0.91178 0.81812 0.81408 0.81112 0.77205 0.89473 0.89501 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.52 37.16 0.35 -1.30 16 2 C 0.15 1.72 2.92 -67.93 -0.20 1.52 16 3 H 0.10 1.52 7.35 -51.93 -0.38 1.14 16 4 C 0.04 0.37 4.59 -3.83 -0.02 0.36 16 5 N -0.51 -5.32 4.29 -236.29 -1.01 -6.33 16 6 C 0.02 0.20 8.02 60.07 0.48 0.68 16 7 C 0.13 1.10 2.34 -68.87 -0.16 0.94 16 8 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 9 C -0.14 -0.99 9.00 37.16 0.33 -0.66 16 10 C 0.09 0.84 4.71 -82.41 -0.39 0.45 16 11 C 0.05 0.41 10.90 -17.37 -0.19 0.22 16 12 N -0.44 -4.26 10.50 -13.06 -0.14 -4.40 16 13 C 0.04 0.34 11.22 -17.38 -0.20 0.14 16 14 C 0.05 0.50 11.22 -17.37 -0.20 0.30 16 15 N -0.40 -4.62 8.41 -9.29 -0.08 -4.69 16 16 N -0.73 -9.76 2.84 -53.81 -0.15 -9.91 16 17 C 0.53 9.98 7.41 -10.98 -0.08 9.90 16 18 O -0.51 -11.77 15.41 5.56 0.09 -11.68 16 19 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 21 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 25 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.65 5.60 -51.93 -0.29 0.36 16 33 H 0.04 0.29 7.85 -51.93 -0.41 -0.11 16 34 H 0.06 0.77 5.61 -51.93 -0.29 0.47 16 35 H 0.09 1.21 5.34 -51.93 -0.28 0.93 16 36 H 0.02 0.18 7.85 -51.93 -0.41 -0.23 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.39 6.08 -51.93 -0.32 0.08 16 40 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.17 1.24 8.06 -52.48 -0.42 0.81 16 43 H 0.39 4.29 7.46 -40.82 -0.30 3.99 16 44 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 45 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -36.37 387.66 -8.66 -45.04 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.87 Total: 2.43 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 0.16 Total: -3.41 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.65 Total: -50.95 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.37 -8.66 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.031 kcal (2) G-P(sol) polarization free energy of solvation -36.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds