Wall clock time and date at job start Tue Mar 31 2020 21:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46604 * 2 1 4 4 C 1.52992 * 109.47158 * 240.00215 * 2 1 3 5 5 N 1.46905 * 109.47159 * 176.06014 * 4 2 1 6 6 C 1.46901 * 110.99599 * 72.90919 * 5 4 2 7 7 C 1.46897 * 111.00344 * 196.86060 * 5 4 2 8 8 H 1.09001 * 109.47469 * 300.00385 * 7 5 4 9 9 C 1.52996 * 109.47140 * 60.00243 * 7 5 4 10 10 C 1.50696 * 109.47485 * 180.02562 * 7 5 4 11 11 C 1.38390 * 120.00490 * 154.72266 * 10 7 5 12 12 N 1.32121 * 120.00006 * 179.78286 * 11 10 7 13 13 C 1.32155 * 119.99663 * 0.49931 * 12 11 10 14 14 C 1.38338 * 120.00532 * 359.73328 * 13 12 11 15 15 N 1.32127 * 119.99734 * 335.00475 * 10 7 5 16 16 N 1.46498 * 109.47001 * 120.00082 * 2 1 3 17 17 C 1.34782 * 119.99890 * 267.72179 * 16 2 1 18 18 O 1.21282 * 119.99967 * 0.02562 * 17 16 2 19 19 C 1.50698 * 120.00039 * 180.02562 * 17 16 2 20 20 S 1.80992 * 109.47288 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00211 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99885 * 0.02562 * 21 20 19 23 23 C 1.38797 * 119.99887 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00196 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99773 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47366 * 59.99547 * 25 23 21 27 27 H 1.48498 * 109.47312 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46852 * 299.99606 * 25 23 21 29 29 H 1.08992 * 109.47408 * 299.99724 * 1 2 3 30 30 H 1.08998 * 109.47081 * 60.00026 * 1 2 3 31 31 H 1.09002 * 109.46763 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47403 * 56.06749 * 4 2 1 33 33 H 1.09000 * 109.47456 * 296.05897 * 4 2 1 34 34 H 1.09002 * 109.47413 * 168.73376 * 6 5 4 35 35 H 1.09001 * 109.47059 * 288.73189 * 6 5 4 36 36 H 1.08998 * 109.47277 * 48.73281 * 6 5 4 37 37 H 1.09003 * 109.47307 * 59.99923 * 9 7 5 38 38 H 1.09000 * 109.47412 * 179.97438 * 9 7 5 39 39 H 1.09000 * 109.47275 * 300.00198 * 9 7 5 40 40 H 1.08005 * 119.99627 * 0.02568 * 11 10 7 41 41 H 1.08004 * 119.99834 * 179.71698 * 13 12 11 42 42 H 1.08004 * 120.00229 * 180.02562 * 14 13 12 43 43 H 0.96988 * 120.00044 * 87.72537 * 16 2 1 44 44 H 1.09006 * 109.46914 * 299.99955 * 19 17 16 45 45 H 1.08998 * 109.46964 * 59.99992 * 19 17 16 46 46 H 0.97008 * 120.00016 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5060 -0.6393 -1.2977 6 6 4.1159 -1.5181 -0.2909 7 6 4.0066 -0.9529 -2.6427 8 1 3.7038 -1.9635 -2.9167 9 6 3.4262 0.0437 -3.6481 10 6 5.5106 -0.8595 -2.6534 11 6 6.2422 -1.5804 -3.5809 12 7 7.5606 -1.4951 -3.5929 13 6 8.1812 -0.7290 -2.7129 14 6 7.4503 -0.0121 -1.7826 15 7 6.1312 -0.0936 -1.7736 16 7 2.0184 -0.6906 1.1961 17 6 2.2867 0.0095 2.3162 18 8 2.1235 1.2112 2.3339 19 6 2.7896 -0.7008 3.5464 20 16 3.0538 0.5026 4.8723 21 6 3.6223 -0.5695 6.1498 22 1 3.7115 -1.6298 5.9651 23 6 3.9565 -0.0511 7.3932 24 7 3.8482 1.2412 7.6183 25 14 4.5599 -1.1876 8.7474 26 1 5.7977 -1.8759 8.3011 27 1 4.8473 -0.3934 9.9688 28 1 3.5135 -2.1972 9.0490 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6203 -0.2496 -2.1378 33 1 1.7356 -1.7672 -1.2147 34 1 5.1874 -1.5940 -0.4759 35 1 3.9473 -1.1037 0.7031 36 1 3.6655 -2.5088 -0.3526 37 1 3.7290 1.0543 -3.3741 38 1 3.7980 -0.1887 -4.6460 39 1 2.3383 -0.0243 -3.6403 40 1 5.7351 -2.2097 -4.2974 41 1 9.2592 -0.6629 -2.7198 42 1 7.9575 0.6143 -1.0637 43 1 2.1486 -1.6516 1.1821 44 1 2.0533 -1.4380 3.8668 45 1 3.7300 -1.2022 3.3176 46 1 4.0821 1.6036 8.4872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716471187.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:42 Heat of formation + Delta-G solvation = 6.145503 kcal Electronic energy + Delta-G solvation = -26947.202335 eV Core-core repulsion = 23191.030571 eV Total energy + Delta-G solvation = -3756.171764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.16804 -40.90569 -39.06066 -36.44123 -34.96645 -34.58366 -33.36757 -32.64511 -31.01963 -30.02399 -27.87131 -27.65446 -25.94697 -25.60850 -24.79386 -22.57369 -21.57806 -21.37148 -19.80901 -18.60981 -17.94103 -17.85721 -17.46707 -16.94849 -16.87469 -16.70999 -16.27426 -16.05021 -15.74607 -15.62291 -15.17830 -14.69697 -14.56812 -14.40082 -14.14218 -13.89860 -13.72534 -13.43203 -13.21299 -13.15910 -13.05344 -12.87424 -12.82383 -12.61531 -12.58738 -12.43467 -12.41410 -12.11728 -11.90410 -11.78146 -11.71234 -11.12909 -10.85013 -10.26738 -10.19715 -9.99468 -9.87325 -9.13921 -8.65705 -8.34119 -6.12077 -0.18218 0.20329 1.27434 1.43267 1.46933 1.57119 1.69604 2.27106 2.35749 2.70281 2.81821 2.99591 3.08316 3.33543 3.38504 3.62314 3.76906 3.83680 4.06278 4.16543 4.18521 4.23562 4.27952 4.37225 4.41735 4.43722 4.44875 4.49170 4.51316 4.57915 4.69155 4.71349 4.82578 4.86393 5.02392 5.10876 5.16600 5.32206 5.32900 5.41105 5.43566 5.61501 6.08500 6.13964 6.19577 6.40286 6.54986 6.89546 7.06687 7.33082 8.74896 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.002769 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.058716 B =10108.664160 C =11844.906736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.064 0.936 4 C 0.051 3.949 5 N -0.537 5.537 6 C 0.025 3.975 7 C 0.134 3.866 8 H 0.085 0.915 9 C -0.139 4.139 10 C 0.076 3.924 11 C 0.050 3.950 12 N -0.459 5.459 13 C 0.043 3.957 14 C 0.038 3.962 15 N -0.438 5.438 16 N -0.704 5.704 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.129 4.129 20 S -0.149 6.149 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.033 0.967 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.194 0.806 41 H 0.195 0.805 42 H 0.181 0.819 43 H 0.410 0.590 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 -10.978 -27.619 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.076 4.076 5 N -0.262 5.262 6 C -0.123 4.123 7 C 0.025 3.975 8 H 0.103 0.897 9 C -0.197 4.197 10 C -0.065 4.065 11 C -0.110 4.110 12 N -0.173 5.173 13 C -0.116 4.116 14 C -0.122 4.122 15 N -0.154 5.154 16 N -0.358 5.358 17 C 0.322 3.678 18 O -0.443 6.443 19 C -0.280 4.280 20 S 0.078 5.922 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.186 1.186 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.211 0.789 41 H 0.212 0.788 42 H 0.198 0.802 43 H 0.247 0.753 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.270 -8.364 -27.404 28.653 hybrid contribution 0.688 -2.504 1.157 2.843 sum 0.958 -10.868 -26.247 28.424 Atomic orbital electron populations 1.22092 0.93732 1.03148 1.02381 1.21052 0.94181 0.97253 0.83456 0.91759 1.22598 0.86795 1.00370 0.97853 1.61708 1.06139 1.54592 1.03735 1.22595 0.98960 0.94145 0.96639 1.20614 0.86836 0.99977 0.90089 0.89705 1.21901 1.02165 0.98103 0.97515 1.22457 0.98193 0.93410 0.92437 1.23912 0.90403 0.98192 0.98498 1.68517 1.10473 1.16337 1.21983 1.24177 1.03284 0.92812 0.91358 1.24237 0.90465 0.98518 0.98968 1.68463 1.10505 1.15163 1.21225 1.46027 1.67207 1.11422 1.11151 1.19940 0.76518 0.86999 0.84375 1.90684 1.53356 1.16366 1.83890 1.23375 1.04948 1.03073 0.96628 1.85585 1.86468 1.13710 1.06414 1.23169 1.51392 0.95863 0.99108 0.90066 1.26127 0.94999 0.97236 1.00769 1.70182 1.46552 1.13645 1.24389 0.85013 0.79053 0.77700 0.76280 1.18695 1.20328 1.18618 0.94804 0.89399 0.90552 0.86700 0.91802 0.93345 0.91941 0.94086 0.93705 0.90225 0.89455 0.78932 0.78808 0.80199 0.75283 0.87479 0.87898 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.52 71.98 0.69 -2.19 16 2 C 0.15 3.23 2.92 44.99 0.13 3.36 16 3 H 0.06 1.97 7.35 -2.38 -0.02 1.95 16 4 C 0.05 0.74 4.59 86.30 0.40 1.14 16 5 N -0.54 -10.17 4.29 -901.48 -3.87 -14.04 16 6 C 0.02 0.53 8.02 127.69 1.02 1.55 16 7 C 0.13 1.88 2.34 44.17 0.10 1.98 16 8 H 0.09 0.77 8.12 -2.39 -0.02 0.75 16 9 C -0.14 -1.57 9.00 71.98 0.65 -0.92 16 10 C 0.08 1.37 4.71 42.55 0.20 1.57 16 11 C 0.05 0.76 10.90 84.69 0.92 1.69 16 12 N -0.46 -8.25 10.50 -195.22 -2.05 -10.30 16 13 C 0.04 0.68 11.22 84.67 0.95 1.63 16 14 C 0.04 0.71 11.22 84.67 0.95 1.66 16 15 N -0.44 -10.16 8.41 -183.29 -1.54 -11.70 16 16 N -0.70 -18.12 2.84 -442.53 -1.26 -19.38 16 17 C 0.54 20.42 7.41 87.66 0.65 21.07 16 18 O -0.56 -27.19 15.41 -3.04 -0.05 -27.24 16 19 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 20 S -0.15 -8.47 20.57 -56.49 -1.16 -9.63 16 21 C -0.55 -31.81 9.50 67.95 0.65 -31.16 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 23 C 0.01 0.78 5.49 84.86 0.47 1.24 16 24 N -0.91 -56.80 13.22 21.65 0.29 -56.52 16 25 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 29 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 1.17 5.60 -2.38 -0.01 1.16 16 33 H 0.06 0.65 7.85 -2.39 -0.02 0.63 16 34 H 0.05 1.16 5.61 -2.39 -0.01 1.15 16 35 H 0.06 1.64 5.34 -2.39 -0.01 1.62 16 36 H 0.04 0.65 7.85 -2.39 -0.02 0.63 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 0.66 6.08 -2.39 -0.01 0.64 16 40 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.20 1.79 8.06 -2.91 -0.02 1.76 16 42 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 43 H 0.41 7.99 7.46 -92.72 -0.69 7.30 16 44 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 45 H 0.10 3.87 8.14 -2.40 -0.02 3.85 16 46 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -84.22 387.66 0.90 -83.31 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.30 Total: 21.59 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 8.21 Total: -2.22 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -8.43 Total: -111.93 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.63 kcal Total: -84.22 0.90 -83.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471187.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.458 kcal (2) G-P(sol) polarization free energy of solvation -84.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds