Wall clock time and date at job start Tue Mar 31 2020 21:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.50699 * 109.46834 * 240.00066 * 2 1 3 5 5 C 1.38389 * 120.00454 * 86.02357 * 4 2 1 6 6 N 1.32124 * 120.00073 * 179.97438 * 5 4 2 7 7 C 1.32154 * 120.00114 * 0.02562 * 6 5 4 8 8 C 1.38343 * 119.99876 * 359.97438 * 7 6 5 9 9 N 1.32133 * 120.00479 * 265.74098 * 4 2 1 10 10 N 1.46899 * 109.47205 * 120.00227 * 2 1 3 11 11 C 1.46894 * 110.99963 * 307.92663 * 10 2 1 12 12 C 1.46899 * 110.99863 * 183.97555 * 10 2 1 13 13 C 1.52998 * 109.47300 * 189.99821 * 12 10 2 14 14 H 1.09005 * 109.47234 * 295.00361 * 13 12 10 15 15 C 1.53003 * 109.47399 * 175.00315 * 13 12 10 16 16 N 1.46501 * 109.47281 * 55.00006 * 13 12 10 17 17 C 1.34774 * 120.00330 * 205.00580 * 16 13 12 18 18 O 1.21280 * 119.99796 * 359.97438 * 17 16 13 19 19 C 1.50701 * 120.00102 * 180.02562 * 17 16 13 20 20 S 1.80998 * 109.47276 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99997 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00005 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99555 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00605 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99633 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46972 * 59.99756 * 25 23 21 27 27 H 1.48499 * 109.47065 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47114 * 299.99884 * 25 23 21 29 29 H 1.09002 * 109.47522 * 60.00175 * 1 2 3 30 30 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99521 * 1 2 3 32 32 H 1.07999 * 120.00018 * 359.97438 * 5 4 2 33 33 H 1.08004 * 119.99713 * 180.02562 * 7 6 5 34 34 H 1.08006 * 119.99609 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.47276 * 65.90405 * 11 10 2 36 36 H 1.09003 * 109.47630 * 305.90415 * 11 10 2 37 37 H 1.09000 * 109.47385 * 185.90332 * 11 10 2 38 38 H 1.09005 * 109.47588 * 309.99921 * 12 10 2 39 39 H 1.09002 * 109.47391 * 70.00151 * 12 10 2 40 40 H 1.08999 * 109.46904 * 180.02562 * 15 13 12 41 41 H 1.09006 * 109.46437 * 299.99660 * 15 13 12 42 42 H 1.08997 * 109.47353 * 59.99834 * 15 13 12 43 43 H 0.97008 * 119.99856 * 24.99947 * 16 13 12 44 44 H 1.09001 * 109.46885 * 299.99550 * 19 17 16 45 45 H 1.08998 * 109.47342 * 59.99351 * 19 17 16 46 46 H 0.96998 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 2.1845 -0.0151 -2.4173 6 7 2.6254 -0.6379 -3.4959 7 6 2.9204 -1.9249 -3.4416 8 6 2.7682 -2.6200 -2.2552 9 7 2.3326 -1.9959 -1.1749 10 7 2.0196 -0.6925 1.1994 11 6 1.4004 -0.1444 2.4134 12 6 3.4850 -0.6303 1.2818 13 6 3.9735 -1.5626 2.3922 14 1 3.6148 -1.1996 3.3554 15 6 5.5032 -1.5933 2.3963 16 7 3.4585 -2.9138 2.1572 17 6 3.3098 -3.7674 3.1895 18 8 3.6027 -3.4171 4.3130 19 6 2.7806 -5.1576 2.9476 20 16 2.6980 -6.0535 4.5181 21 6 2.0650 -7.5988 3.9558 22 1 1.8555 -7.7470 2.9068 23 6 1.8357 -8.6255 4.8613 24 7 2.0915 -8.4451 6.1398 25 14 1.1653 -10.2640 4.2651 26 1 2.1077 -10.8563 3.2821 27 1 1.0111 -11.1853 5.4195 28 1 -0.1554 -10.0532 3.6197 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9430 1.0366 -2.4618 33 1 3.2811 -2.4339 -4.3233 34 1 3.0097 -3.6718 -2.2108 35 1 0.3318 -0.3596 2.4052 36 1 1.5536 0.9344 2.4442 37 1 1.8562 -0.6013 3.2918 38 1 3.9161 -0.9416 0.3302 39 1 3.7935 0.3914 1.5034 40 1 5.8511 -2.2579 3.1872 41 1 5.8618 -1.9565 1.4331 42 1 5.8864 -0.5880 2.5712 43 1 3.2245 -3.1942 1.2585 44 1 1.7837 -5.0960 2.5112 45 1 3.4448 -5.6852 2.2631 46 1 1.9308 -9.1625 6.7725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716471188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:47 Heat of formation + Delta-G solvation = 22.069525 kcal Electronic energy + Delta-G solvation = -27193.015164 eV Core-core repulsion = 23437.533918 eV Total energy + Delta-G solvation = -3755.481246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52229 -39.42773 -38.14324 -35.29946 -34.37277 -32.68078 -32.36260 -31.29694 -29.95719 -28.37735 -27.51197 -25.46010 -25.35338 -25.01258 -23.98916 -21.34157 -20.70930 -19.96321 -17.94306 -17.73876 -17.34569 -16.70949 -16.38928 -16.08610 -15.72053 -15.17238 -14.87679 -14.74865 -14.61476 -14.39957 -14.06986 -13.63541 -13.43972 -13.20116 -13.02179 -12.83741 -12.58636 -12.49768 -12.27664 -12.18580 -11.92565 -11.84578 -11.78718 -11.59016 -11.52021 -11.19803 -10.99200 -10.97388 -10.73699 -10.69523 -9.74311 -9.59660 -9.31699 -9.18779 -8.99777 -8.61451 -8.52507 -8.13855 -6.40785 -6.15058 -3.84193 0.40943 0.83806 3.16385 3.27359 3.29854 3.31894 3.34014 3.38358 3.47823 3.63548 3.92555 3.92901 4.21705 4.27522 4.32369 4.65389 4.72881 4.77771 4.95099 4.97085 5.01653 5.09976 5.16138 5.19732 5.24739 5.28594 5.30671 5.37769 5.44465 5.47768 5.55474 5.65496 5.79594 5.82075 5.92912 6.00240 6.04972 6.11101 6.21969 6.30340 6.72846 6.75206 6.97461 7.00348 7.49775 7.65868 8.04841 8.41866 8.86568 9.30143 10.92337 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.002812 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.035654 B = 9955.412769 C =10894.502251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.135 3.865 3 H 0.060 0.940 4 C 0.088 3.912 5 C 0.048 3.952 6 N -0.438 5.438 7 C 0.040 3.960 8 C 0.052 3.948 9 N -0.402 5.402 10 N -0.514 5.514 11 C 0.019 3.981 12 C 0.051 3.949 13 C 0.151 3.849 14 H 0.086 0.914 15 C -0.163 4.163 16 N -0.714 5.714 17 C 0.533 3.467 18 O -0.528 6.528 19 C -0.150 4.150 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.071 0.929 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.404 0.596 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.689 20.422 -18.752 27.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.025 3.975 3 H 0.078 0.922 4 C -0.053 4.053 5 C -0.112 4.112 6 N -0.152 5.152 7 C -0.119 4.119 8 C -0.108 4.108 9 N -0.117 5.117 10 N -0.238 5.238 11 C -0.129 4.129 12 C -0.077 4.077 13 C 0.045 3.955 14 H 0.104 0.896 15 C -0.222 4.222 16 N -0.368 5.368 17 C 0.319 3.681 18 O -0.404 6.404 19 C -0.300 4.300 20 S 0.165 5.835 21 C -0.682 4.682 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.743 3.257 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.181 0.819 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.239 0.761 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.044 20.442 -16.735 26.439 hybrid contribution -0.613 -0.830 -2.216 2.444 sum 0.431 19.612 -18.951 27.276 Atomic orbital electron populations 1.21909 0.92306 1.03681 1.02356 1.20469 0.96227 0.93925 0.86865 0.92245 1.22182 0.95871 0.91459 0.95759 1.23493 0.97064 1.01513 0.89135 1.68458 1.07661 1.09803 1.29281 1.23796 0.97463 0.91151 0.99511 1.23978 0.95527 1.01990 0.89274 1.68422 1.06008 1.08317 1.28949 1.61810 1.05626 1.55159 1.01238 1.22534 1.00920 0.96855 0.92596 1.22418 0.87793 0.97830 0.99665 1.20786 0.93107 0.83131 0.98512 0.89634 1.22168 0.95455 1.02048 1.02524 1.45816 1.67385 1.12539 1.11034 1.20221 0.76963 0.86383 0.84497 1.90672 1.49485 1.77455 1.22772 1.23492 1.03497 0.95629 1.07425 1.85333 1.85154 1.09891 1.03153 1.22844 1.49998 0.98837 0.96512 0.91067 1.24976 0.95255 0.98798 0.94550 1.70011 1.45594 1.33305 1.01525 0.86252 0.79375 0.81796 0.78233 1.19983 1.20878 1.19968 0.92030 0.90987 0.91107 0.81850 0.81484 0.81120 0.90704 0.95691 0.90419 0.90734 0.93931 0.91273 0.92777 0.92224 0.76054 0.89329 0.89646 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.68 37.16 0.32 -0.69 16 2 C 0.14 1.04 2.33 -68.87 -0.16 0.88 16 3 H 0.06 0.37 8.11 -51.93 -0.42 -0.05 16 4 C 0.09 0.75 4.79 -82.41 -0.39 0.36 16 5 C 0.05 0.37 10.90 -17.37 -0.19 0.18 16 6 N -0.44 -3.86 10.50 -13.06 -0.14 -3.99 16 7 C 0.04 0.29 11.22 -17.37 -0.20 0.10 16 8 C 0.05 0.41 11.22 -17.38 -0.20 0.21 16 9 N -0.40 -3.87 9.03 -9.29 -0.08 -3.95 16 10 N -0.51 -4.93 3.99 -236.29 -0.94 -5.88 16 11 C 0.02 0.17 8.68 60.06 0.52 0.70 16 12 C 0.05 0.49 4.23 -3.83 -0.02 0.48 16 13 C 0.15 1.85 2.38 -67.93 -0.16 1.69 16 14 H 0.09 1.21 6.03 -51.93 -0.31 0.89 16 15 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 16 N -0.71 -10.36 4.80 -53.80 -0.26 -10.62 16 17 C 0.53 10.34 7.81 -10.99 -0.09 10.26 16 18 O -0.53 -12.16 15.53 5.56 0.09 -12.07 16 19 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 20 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 21 C -0.53 -15.50 9.50 30.94 0.29 -15.20 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 25 Si 0.92 21.71 29.55 -169.99 -5.02 16.69 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.45 6.45 -51.93 -0.33 0.11 16 32 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.07 0.68 6.58 -51.93 -0.34 0.34 16 36 H 0.02 0.19 8.12 -51.93 -0.42 -0.23 16 37 H 0.08 0.89 6.19 -51.93 -0.32 0.57 16 38 H 0.07 0.74 6.40 -51.93 -0.33 0.41 16 39 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.40 5.38 8.60 -40.82 -0.35 5.03 16 44 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -35.74 393.27 -8.72 -44.47 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.03 Total: 2.69 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 0.22 Total: -3.49 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.69 Total: -50.28 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.74 -8.72 -44.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.537 kcal (2) G-P(sol) polarization free energy of solvation -35.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds