Wall clock time and date at job start Tue Mar 31 2020 21:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.50699 * 109.46834 * 240.00066 * 2 1 3 5 5 C 1.38389 * 120.00454 * 86.02357 * 4 2 1 6 6 N 1.32124 * 120.00073 * 179.97438 * 5 4 2 7 7 C 1.32154 * 120.00114 * 0.02562 * 6 5 4 8 8 C 1.38343 * 119.99876 * 359.97438 * 7 6 5 9 9 N 1.32133 * 120.00479 * 265.74098 * 4 2 1 10 10 N 1.46899 * 109.47205 * 120.00227 * 2 1 3 11 11 C 1.46894 * 110.99963 * 307.92663 * 10 2 1 12 12 C 1.46899 * 110.99863 * 183.97555 * 10 2 1 13 13 C 1.52998 * 109.47300 * 189.99821 * 12 10 2 14 14 H 1.09005 * 109.47234 * 295.00361 * 13 12 10 15 15 C 1.53003 * 109.47399 * 175.00315 * 13 12 10 16 16 N 1.46501 * 109.47281 * 55.00006 * 13 12 10 17 17 C 1.34774 * 120.00330 * 205.00580 * 16 13 12 18 18 O 1.21280 * 119.99796 * 359.97438 * 17 16 13 19 19 C 1.50701 * 120.00102 * 180.02562 * 17 16 13 20 20 S 1.80998 * 109.47276 * 179.97438 * 19 17 16 21 21 C 1.76200 * 99.99997 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00005 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99555 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00605 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99633 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46972 * 59.99756 * 25 23 21 27 27 H 1.48499 * 109.47065 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47114 * 299.99884 * 25 23 21 29 29 H 1.09002 * 109.47522 * 60.00175 * 1 2 3 30 30 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46782 * 299.99521 * 1 2 3 32 32 H 1.07999 * 120.00018 * 359.97438 * 5 4 2 33 33 H 1.08004 * 119.99713 * 180.02562 * 7 6 5 34 34 H 1.08006 * 119.99609 * 180.02562 * 8 7 6 35 35 H 1.09007 * 109.47276 * 65.90405 * 11 10 2 36 36 H 1.09003 * 109.47630 * 305.90415 * 11 10 2 37 37 H 1.09000 * 109.47385 * 185.90332 * 11 10 2 38 38 H 1.09005 * 109.47588 * 309.99921 * 12 10 2 39 39 H 1.09002 * 109.47391 * 70.00151 * 12 10 2 40 40 H 1.08999 * 109.46904 * 180.02562 * 15 13 12 41 41 H 1.09006 * 109.46437 * 299.99660 * 15 13 12 42 42 H 1.08997 * 109.47353 * 59.99834 * 15 13 12 43 43 H 0.97008 * 119.99856 * 24.99947 * 16 13 12 44 44 H 1.09001 * 109.46885 * 299.99550 * 19 17 16 45 45 H 1.08998 * 109.47342 * 59.99351 * 19 17 16 46 46 H 0.96998 * 120.00100 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 2.1845 -0.0151 -2.4173 6 7 2.6254 -0.6379 -3.4959 7 6 2.9204 -1.9249 -3.4416 8 6 2.7682 -2.6200 -2.2552 9 7 2.3326 -1.9959 -1.1749 10 7 2.0196 -0.6925 1.1994 11 6 1.4004 -0.1444 2.4134 12 6 3.4850 -0.6303 1.2818 13 6 3.9735 -1.5626 2.3922 14 1 3.6148 -1.1996 3.3554 15 6 5.5032 -1.5933 2.3963 16 7 3.4585 -2.9138 2.1572 17 6 3.3098 -3.7674 3.1895 18 8 3.6027 -3.4171 4.3130 19 6 2.7806 -5.1576 2.9476 20 16 2.6980 -6.0535 4.5181 21 6 2.0650 -7.5988 3.9558 22 1 1.8555 -7.7470 2.9068 23 6 1.8357 -8.6255 4.8613 24 7 2.0915 -8.4451 6.1398 25 14 1.1653 -10.2640 4.2651 26 1 2.1077 -10.8563 3.2821 27 1 1.0111 -11.1853 5.4195 28 1 -0.1554 -10.0532 3.6197 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.9430 1.0366 -2.4618 33 1 3.2811 -2.4339 -4.3233 34 1 3.0097 -3.6718 -2.2108 35 1 0.3318 -0.3596 2.4052 36 1 1.5536 0.9344 2.4442 37 1 1.8562 -0.6013 3.2918 38 1 3.9161 -0.9416 0.3302 39 1 3.7935 0.3914 1.5034 40 1 5.8511 -2.2579 3.1872 41 1 5.8618 -1.9565 1.4331 42 1 5.8864 -0.5880 2.5712 43 1 3.2245 -3.1942 1.2585 44 1 1.7837 -5.0960 2.5112 45 1 3.4448 -5.6852 2.2631 46 1 1.9308 -9.1625 6.7725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716471188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:46 Heat of formation + Delta-G solvation = -4.360246 kcal Electronic energy + Delta-G solvation = -27194.161245 eV Core-core repulsion = 23437.533918 eV Total energy + Delta-G solvation = -3756.627327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.09246 -40.72626 -39.08490 -36.39509 -34.99717 -34.56801 -33.48802 -32.45863 -30.66957 -29.86580 -28.25289 -27.63568 -26.11331 -25.60057 -24.64738 -22.44742 -21.48717 -21.21369 -19.79749 -18.53090 -17.89243 -17.83800 -17.31922 -17.26218 -16.86262 -16.54230 -16.22702 -16.02150 -15.75638 -15.36550 -15.21589 -14.65328 -14.56790 -14.36498 -14.05339 -13.89190 -13.85764 -13.36529 -13.18798 -13.15357 -13.10009 -12.94141 -12.85520 -12.61072 -12.57865 -12.51902 -12.39730 -12.20157 -11.87356 -11.73357 -11.63467 -11.11363 -10.81901 -10.25062 -10.13590 -9.93902 -9.88584 -9.21085 -8.63445 -8.32618 -6.10112 -0.12595 0.26266 1.29383 1.44546 1.48332 1.59247 1.74494 2.28870 2.41277 2.73634 2.84398 3.00997 3.11017 3.36702 3.43929 3.65499 3.74232 3.86390 4.04409 4.14598 4.20523 4.24293 4.30508 4.36360 4.41506 4.46850 4.47742 4.49474 4.54923 4.63624 4.66122 4.72742 4.75334 4.83164 4.92028 5.02487 5.13401 5.24076 5.30604 5.42977 5.48430 5.65247 6.06815 6.08590 6.21438 6.44811 6.68869 6.94334 7.08262 7.39731 8.76420 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.002812 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.035654 B = 9955.412769 C =10894.502251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.137 3.863 3 H 0.083 0.917 4 C 0.079 3.921 5 C 0.049 3.951 6 N -0.460 5.460 7 C 0.041 3.959 8 C 0.043 3.957 9 N -0.430 5.430 10 N -0.531 5.531 11 C 0.023 3.977 12 C 0.065 3.935 13 C 0.148 3.852 14 H 0.067 0.933 15 C -0.157 4.157 16 N -0.689 5.689 17 C 0.535 3.465 18 O -0.570 6.570 19 C -0.125 4.125 20 S -0.147 6.147 21 C -0.548 4.548 22 H 0.080 0.920 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.192 0.808 34 H 0.188 0.812 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.414 0.586 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 21.178 -21.603 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.028 3.972 3 H 0.100 0.900 4 C -0.062 4.062 5 C -0.111 4.111 6 N -0.175 5.175 7 C -0.118 4.118 8 C -0.117 4.117 9 N -0.145 5.145 10 N -0.256 5.256 11 C -0.125 4.125 12 C -0.064 4.064 13 C 0.043 3.957 14 H 0.085 0.915 15 C -0.216 4.216 16 N -0.341 5.341 17 C 0.321 3.679 18 O -0.450 6.450 19 C -0.277 4.277 20 S 0.080 5.920 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.204 0.796 33 H 0.209 0.791 34 H 0.205 0.795 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.250 0.750 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.770 21.235 -19.641 28.936 hybrid contribution -0.510 -0.954 -1.418 1.783 sum 0.260 20.282 -21.059 29.238 Atomic orbital electron populations 1.21871 0.92019 1.02376 1.03490 1.20548 0.96384 0.94693 0.85599 0.89987 1.22304 0.96284 0.91321 0.96283 1.23830 0.96259 1.02501 0.88539 1.68510 1.08501 1.10590 1.29878 1.24193 0.96568 0.90851 1.00204 1.24290 0.95413 1.02805 0.89148 1.68375 1.06864 1.09127 1.30088 1.61740 1.05526 1.56365 1.01951 1.22443 1.00538 0.97874 0.91627 1.22257 0.88015 0.97855 0.98257 1.20985 0.93747 0.81986 0.99015 0.91537 1.22103 0.94571 1.02931 1.01988 1.45624 1.65562 1.12798 1.10145 1.19937 0.76965 0.86254 0.84787 1.90661 1.51702 1.78032 1.24569 1.23323 1.04805 0.96075 1.03478 1.85488 1.85550 1.11738 1.09181 1.23177 1.50198 0.99090 0.97071 0.90167 1.26118 0.95216 1.03215 0.94536 1.70177 1.46750 1.34797 1.03071 0.85019 0.79037 0.76076 0.77955 1.18613 1.20299 1.18709 0.90407 0.93440 0.90473 0.79556 0.79095 0.79550 0.90794 0.93605 0.93075 0.90462 0.91900 0.94407 0.91538 0.89699 0.74971 0.88129 0.87929 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.68 71.98 0.62 -1.08 16 2 C 0.14 1.78 2.33 44.17 0.10 1.88 16 3 H 0.08 0.72 8.11 -2.39 -0.02 0.70 16 4 C 0.08 1.17 4.79 42.55 0.20 1.37 16 5 C 0.05 0.63 10.90 84.68 0.92 1.56 16 6 N -0.46 -7.12 10.50 -195.22 -2.05 -9.17 16 7 C 0.04 0.51 11.22 84.67 0.95 1.46 16 8 C 0.04 0.59 11.22 84.67 0.95 1.54 16 9 N -0.43 -7.52 9.03 -183.29 -1.66 -9.18 16 10 N -0.53 -9.31 3.99 -901.48 -3.60 -12.91 16 11 C 0.02 0.41 8.68 127.69 1.11 1.51 16 12 C 0.06 1.10 4.23 86.30 0.36 1.47 16 13 C 0.15 3.52 2.38 44.99 0.11 3.63 16 14 H 0.07 1.90 6.03 -2.38 -0.01 1.89 16 15 C -0.16 -3.45 9.48 71.98 0.68 -2.77 16 16 N -0.69 -19.65 4.80 -442.53 -2.12 -21.78 16 17 C 0.53 21.06 7.81 87.66 0.68 21.74 16 18 O -0.57 -27.28 15.53 -3.03 -0.05 -27.32 16 19 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 20 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 21 C -0.55 -32.11 9.50 67.95 0.65 -31.47 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.80 5.49 84.86 0.47 1.27 16 24 N -0.91 -56.92 13.22 21.65 0.29 -56.63 16 25 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 26 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.83 6.45 -2.39 -0.02 0.81 16 32 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 33 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.07 1.30 6.58 -2.38 -0.02 1.29 16 36 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 37 H 0.05 1.19 6.19 -2.39 -0.01 1.17 16 38 H 0.08 1.33 6.40 -2.38 -0.02 1.31 16 39 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.41 10.49 8.60 -92.70 -0.80 9.70 16 44 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 45 H 0.10 3.99 8.14 -2.40 -0.02 3.97 16 46 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -80.05 393.27 0.12 -79.94 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.19 Total: 23.05 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 8.25 Total: -2.78 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -9.14 Total: -109.67 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.05 Total: -27.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -80.05 0.12 -79.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.575 kcal (2) G-P(sol) polarization free energy of solvation -80.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds