Wall clock time and date at job start Tue Mar 31 2020 21:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47150 * 119.99759 * 2 1 3 5 5 N 1.46902 * 109.47180 * 174.99546 * 4 2 1 6 6 C 1.46898 * 110.99452 * 66.04680 * 5 4 2 7 7 C 1.46898 * 111.00157 * 189.99885 * 5 4 2 8 8 H 1.09001 * 109.47062 * 300.00401 * 7 5 4 9 9 C 1.53006 * 109.47006 * 60.00147 * 7 5 4 10 10 C 1.50697 * 109.47356 * 180.02562 * 7 5 4 11 11 C 1.38388 * 120.00355 * 154.72527 * 10 7 5 12 12 N 1.32123 * 119.99578 * 179.78300 * 11 10 7 13 13 C 1.32156 * 119.99964 * 0.48957 * 12 11 10 14 14 C 1.38343 * 120.00444 * 359.74114 * 13 12 11 15 15 N 1.32126 * 119.99735 * 335.00007 * 10 7 5 16 16 N 1.46496 * 109.46833 * 239.99551 * 2 1 3 17 17 C 1.34784 * 119.99643 * 85.00071 * 16 2 1 18 18 O 1.21276 * 120.00299 * 0.02562 * 17 16 2 19 19 C 1.50704 * 119.99676 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.46850 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99777 * 180.02562 * 20 19 17 22 22 H 1.08005 * 120.00063 * 0.02562 * 21 20 19 23 23 C 1.38794 * 119.99805 * 179.97438 * 21 20 19 24 24 N 1.31630 * 120.00407 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00132 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46871 * 90.00163 * 25 23 21 27 27 H 1.48495 * 109.47282 * 210.00511 * 25 23 21 28 28 H 1.48505 * 109.46714 * 330.00540 * 25 23 21 29 29 H 1.08996 * 109.47272 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47145 * 300.00234 * 1 2 3 31 31 H 1.08997 * 109.47191 * 59.99681 * 1 2 3 32 32 H 1.09010 * 109.47109 * 54.99534 * 4 2 1 33 33 H 1.08995 * 109.47375 * 295.00134 * 4 2 1 34 34 H 1.09002 * 109.46960 * 183.94905 * 6 5 4 35 35 H 1.08997 * 109.47651 * 303.95516 * 6 5 4 36 36 H 1.09002 * 109.47061 * 63.95566 * 6 5 4 37 37 H 1.09000 * 109.47050 * 179.97438 * 9 7 5 38 38 H 1.09001 * 109.46801 * 300.00064 * 9 7 5 39 39 H 1.09001 * 109.46998 * 59.99660 * 9 7 5 40 40 H 1.07998 * 119.99848 * 0.02562 * 11 10 7 41 41 H 1.08001 * 119.99543 * 179.71587 * 13 12 11 42 42 H 1.07993 * 119.99815 * 179.97438 * 14 13 12 43 43 H 0.96998 * 120.00185 * 265.00151 * 16 2 1 44 44 H 1.08999 * 109.47273 * 300.00707 * 19 17 16 45 45 H 1.09005 * 109.46526 * 60.00579 * 19 17 16 46 46 H 0.96998 * 120.00250 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5041 -0.8267 1.1904 6 6 4.1310 0.4993 1.2718 7 6 4.0108 -1.7143 2.2455 8 1 3.7279 -1.3180 3.2206 9 6 3.4108 -3.1107 2.0689 10 6 5.5127 -1.7972 2.1540 11 6 6.2583 -2.1088 3.2774 12 7 7.5748 -2.1856 3.1960 13 6 8.1802 -1.9553 2.0440 14 6 7.4352 -1.6390 0.9221 15 7 6.1180 -1.5668 1.0023 16 7 2.0183 -0.6907 -1.1961 17 6 2.1470 -0.0183 -2.3572 18 8 1.8590 1.1585 -2.4116 19 6 2.6498 -0.7287 -3.5875 20 16 2.7112 0.4345 -4.9729 21 6 3.3141 -0.6309 -6.2403 22 1 3.5227 -1.6676 -6.0204 23 6 3.5200 -0.1381 -7.5214 24 7 3.2653 1.1252 -7.7895 25 14 4.1585 -1.2677 -8.8652 26 1 3.0124 -1.9045 -9.5625 27 1 4.9538 -0.4779 -9.8393 28 1 5.0168 -2.3187 -8.2620 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6053 -1.7198 1.2952 33 1 1.7517 -0.1583 2.1369 34 1 5.2102 0.3987 1.1556 35 1 3.7381 1.1364 0.4796 36 1 3.9102 0.9467 2.2410 37 1 3.7872 -3.7695 2.8515 38 1 2.3245 -3.0505 2.1354 39 1 3.6937 -3.5070 1.0937 40 1 5.7638 -2.2931 4.2196 41 1 9.2566 -2.0135 1.9787 42 1 7.9300 -1.4504 -0.0191 43 1 2.2490 -1.6318 -1.1525 44 1 3.6491 -1.1206 -3.3979 45 1 1.9774 -1.5510 -3.8324 46 1 3.4088 1.4694 -8.6849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716471189.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:50 Heat of formation + Delta-G solvation = 25.264702 kcal Electronic energy + Delta-G solvation = -26940.946200 eV Core-core repulsion = 23185.603508 eV Total energy + Delta-G solvation = -3755.342693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50995 -39.47579 -38.13285 -35.33099 -34.23621 -32.69593 -32.36543 -31.13797 -30.41243 -28.40595 -27.19608 -25.42000 -25.33490 -24.95102 -24.09355 -21.53043 -20.65457 -20.00082 -17.96355 -17.74925 -17.28299 -16.65850 -16.40371 -15.82584 -15.73261 -15.26782 -14.93733 -14.75079 -14.60663 -14.49577 -14.09864 -13.78387 -13.42015 -13.10958 -13.02225 -12.70909 -12.66821 -12.59944 -12.39299 -12.08368 -11.90680 -11.85968 -11.71892 -11.63334 -11.44920 -11.10620 -11.01781 -10.95844 -10.73423 -10.69156 -9.73986 -9.57631 -9.27098 -9.20913 -9.00830 -8.65561 -8.52341 -8.14014 -6.41148 -6.15540 -3.84588 0.43663 0.86504 3.15172 3.25938 3.28873 3.32238 3.34799 3.39245 3.48677 3.65410 3.89628 3.94906 4.25245 4.26996 4.34166 4.59471 4.73672 4.81155 4.96957 4.99132 4.99222 5.12345 5.15693 5.19396 5.23763 5.27858 5.32724 5.37638 5.43038 5.48105 5.58313 5.65132 5.79534 5.82998 5.93910 6.04043 6.05089 6.10986 6.21785 6.29571 6.73327 6.76227 6.94119 7.02725 7.52924 7.65856 7.98060 8.41728 8.83667 9.29860 10.91906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.002866 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.675890 B = 9767.761230 C =11553.791402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.085 0.915 4 C 0.041 3.959 5 N -0.513 5.513 6 C 0.025 3.975 7 C 0.135 3.865 8 H 0.059 0.941 9 C -0.144 4.144 10 C 0.087 3.913 11 C 0.048 3.952 12 N -0.439 5.439 13 C 0.041 3.959 14 C 0.053 3.947 15 N -0.400 5.400 16 N -0.716 5.716 17 C 0.535 3.465 18 O -0.527 6.527 19 C -0.150 4.150 20 S -0.062 6.062 21 C -0.532 4.532 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.018 0.982 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.400 0.600 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.669 -8.663 25.850 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.087 4.087 5 N -0.237 5.237 6 C -0.123 4.123 7 C 0.025 3.975 8 H 0.077 0.923 9 C -0.202 4.202 10 C -0.054 4.054 11 C -0.112 4.112 12 N -0.153 5.153 13 C -0.119 4.119 14 C -0.107 4.107 15 N -0.115 5.115 16 N -0.369 5.369 17 C 0.321 3.679 18 O -0.402 6.402 19 C -0.301 4.301 20 S 0.164 5.836 21 C -0.681 4.681 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.189 0.811 43 H 0.234 0.766 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.332 -6.758 25.182 26.177 hybrid contribution 0.821 -2.162 -0.033 2.313 sum 3.153 -8.920 25.148 26.869 Atomic orbital electron populations 1.22169 0.95308 1.02047 1.02679 1.20804 0.93334 0.97523 0.83976 0.89690 1.22596 0.87764 1.01444 0.96921 1.61823 1.04623 1.11717 1.45542 1.22464 1.00808 0.89278 0.99756 1.20464 0.87698 0.95428 0.93933 0.92289 1.21914 1.01070 0.93979 1.03263 1.22153 0.97299 0.95912 0.90074 1.23480 0.90534 0.97669 0.99534 1.68455 1.10232 1.09957 1.26649 1.23802 1.02116 0.96582 0.89391 1.23987 0.90609 0.95745 1.00360 1.68502 1.09789 1.07976 1.25199 1.45777 1.68487 1.13957 1.08665 1.20206 0.76689 0.87122 0.83849 1.90676 1.49030 1.15838 1.84642 1.23501 1.03662 1.04579 0.98372 1.85344 1.86246 1.13150 0.98833 1.22878 1.50671 0.98137 0.96392 0.91023 1.24979 0.95213 0.95494 0.97932 1.70023 1.45847 1.13193 1.21368 0.86192 0.78821 0.80011 0.80619 1.20334 1.20813 1.19706 0.92529 0.92159 0.91355 0.89638 0.93590 0.90964 0.90492 0.96385 0.91965 0.91199 0.90982 0.81837 0.81429 0.81108 0.76636 0.89261 0.89607 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.15 1.73 2.36 -67.93 -0.16 1.57 16 3 H 0.09 1.19 6.15 -51.93 -0.32 0.87 16 4 C 0.04 0.34 4.33 -3.82 -0.02 0.33 16 5 N -0.51 -4.92 4.06 -236.28 -0.96 -5.88 16 6 C 0.02 0.27 8.92 60.06 0.54 0.81 16 7 C 0.13 1.04 2.34 -68.86 -0.16 0.88 16 8 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 9 C -0.14 -0.92 8.97 37.16 0.33 -0.59 16 10 C 0.09 0.79 4.94 -82.41 -0.41 0.38 16 11 C 0.05 0.40 10.90 -17.37 -0.19 0.21 16 12 N -0.44 -4.12 10.50 -13.06 -0.14 -4.26 16 13 C 0.04 0.33 11.22 -17.37 -0.20 0.13 16 14 C 0.05 0.47 11.22 -17.37 -0.20 0.28 16 15 N -0.40 -4.35 8.20 -9.29 -0.08 -4.43 16 16 N -0.72 -9.86 4.80 -53.81 -0.26 -10.12 16 17 C 0.54 10.22 7.81 -10.98 -0.09 10.13 16 18 O -0.53 -12.06 15.52 5.56 0.09 -11.97 16 19 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 20 S -0.06 -1.73 20.57 -107.50 -2.21 -3.94 16 21 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 22 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.56 13.22 55.49 0.73 -25.82 16 25 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.09 0.60 5.83 -51.92 -0.30 0.29 16 33 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.07 0.87 5.82 -51.93 -0.30 0.57 16 35 H 0.08 1.00 6.40 -51.93 -0.33 0.66 16 36 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.37 6.20 -51.93 -0.32 0.05 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.40 4.76 8.60 -40.82 -0.35 4.41 16 44 H 0.09 1.79 8.14 -51.92 -0.42 1.36 16 45 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -36.24 392.07 -8.67 -44.91 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.97 Total: 2.24 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.23 Total: -3.33 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.70 Total: -50.51 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.21 Total: -3.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.24 -8.67 -44.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471189.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.179 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds