Wall clock time and date at job start Tue Mar 31 2020 21:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47111 * 239.99510 * 2 1 3 5 5 N 1.46904 * 109.46988 * 184.99995 * 4 2 1 6 6 C 1.46904 * 110.99896 * 293.95313 * 5 4 2 7 7 C 1.46903 * 110.99717 * 170.00517 * 5 4 2 8 8 H 1.08994 * 109.47198 * 59.99922 * 7 5 4 9 9 C 1.53003 * 109.46820 * 299.99474 * 7 5 4 10 10 C 1.50706 * 109.46978 * 179.97438 * 7 5 4 11 11 C 1.38386 * 120.00005 * 204.99708 * 10 7 5 12 12 N 1.32124 * 119.99712 * 180.02562 * 11 10 7 13 13 C 1.32158 * 120.00097 * 359.97438 * 12 11 10 14 14 C 1.38336 * 120.00075 * 0.26620 * 13 12 11 15 15 N 1.32127 * 120.00100 * 25.01885 * 10 7 5 16 16 N 1.46505 * 109.47365 * 119.99621 * 2 1 3 17 17 C 1.34774 * 119.99944 * 275.00337 * 16 2 1 18 18 O 1.21281 * 120.00342 * 359.97438 * 17 16 2 19 19 C 1.50706 * 119.99978 * 179.97438 * 17 16 2 20 20 S 1.80994 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00199 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99610 * 0.02562 * 21 20 19 23 23 C 1.38793 * 120.00335 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00084 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00270 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46809 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46975 * 120.00069 * 25 23 21 28 28 H 1.48491 * 109.47478 * 240.00122 * 25 23 21 29 29 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47426 * 300.00167 * 1 2 3 31 31 H 1.08995 * 109.47702 * 60.00546 * 1 2 3 32 32 H 1.09003 * 109.47006 * 65.00113 * 4 2 1 33 33 H 1.08999 * 109.47226 * 304.99735 * 4 2 1 34 34 H 1.08998 * 109.47182 * 296.04338 * 6 5 4 35 35 H 1.08991 * 109.46889 * 56.05269 * 6 5 4 36 36 H 1.09003 * 109.46695 * 176.04638 * 6 5 4 37 37 H 1.09004 * 109.47181 * 180.02562 * 9 7 5 38 38 H 1.08994 * 109.47601 * 300.00201 * 9 7 5 39 39 H 1.09001 * 109.46840 * 60.00636 * 9 7 5 40 40 H 1.08005 * 120.00186 * 0.03930 * 11 10 7 41 41 H 1.08002 * 119.99718 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.00403 * 179.72028 * 14 13 12 43 43 H 0.97008 * 119.99890 * 94.99903 * 16 2 1 44 44 H 1.08999 * 109.47545 * 300.00373 * 19 17 16 45 45 H 1.09003 * 109.46648 * 59.99969 * 19 17 16 46 46 H 0.97000 * 120.00134 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.1309 0.4993 -1.2720 7 6 4.0107 -1.7145 -2.2454 8 1 3.7277 -1.3183 -3.2205 9 6 3.4108 -3.1109 -2.0685 10 6 5.5127 -1.7972 -2.1539 11 6 6.2578 -2.1145 -3.2760 12 7 7.5746 -2.1875 -3.1956 13 6 8.1801 -1.9570 -2.0437 14 6 7.4349 -1.6446 -0.9209 15 7 6.1181 -1.5671 -1.0022 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3571 18 8 1.8589 1.1587 2.4115 19 6 2.6489 -0.7286 3.5878 20 16 2.7106 0.4347 4.9731 21 6 3.3137 -0.6304 6.2405 22 1 3.5230 -1.6669 6.0205 23 6 3.5198 -0.1375 7.5215 24 7 3.2652 1.1258 7.7895 25 14 4.1586 -1.2669 8.8653 26 1 4.3648 -2.6290 8.3107 27 1 5.4486 -0.7424 9.3810 28 1 3.1708 -1.3271 9.9724 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7199 -1.2950 34 1 3.9101 0.9465 -2.2411 35 1 3.7380 1.1363 -0.4797 36 1 5.2101 0.3987 -1.1557 37 1 3.7871 -3.7698 -2.8512 38 1 3.6938 -3.5071 -1.0934 39 1 2.3245 -3.0507 -2.1350 40 1 5.7630 -2.3023 -4.2175 41 1 9.2564 -2.0170 -1.9780 42 1 7.9293 -1.4606 0.0215 43 1 2.2490 -1.6318 1.1527 44 1 1.9761 -1.5505 3.8327 45 1 3.6480 -1.1211 3.3986 46 1 3.4088 1.4702 8.6848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716471190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:54 Heat of formation + Delta-G solvation = 25.219807 kcal Electronic energy + Delta-G solvation = -26940.598540 eV Core-core repulsion = 23185.253901 eV Total energy + Delta-G solvation = -3755.344640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50955 -39.47552 -38.13236 -35.33053 -34.23576 -32.69653 -32.36591 -31.13870 -30.41186 -28.40648 -27.19663 -25.42217 -25.33439 -24.95118 -24.09340 -21.53073 -20.65509 -20.00057 -17.96383 -17.75064 -17.28368 -16.65790 -16.40336 -15.82595 -15.73070 -15.26937 -14.93695 -14.75241 -14.60730 -14.49663 -14.09932 -13.78471 -13.42163 -13.10952 -13.02217 -12.70922 -12.66802 -12.60066 -12.39387 -12.08477 -11.90704 -11.86040 -11.71652 -11.63354 -11.44986 -11.10706 -11.02953 -10.94951 -10.73348 -10.68768 -9.73101 -9.57646 -9.27161 -9.20906 -9.01695 -8.65602 -8.52367 -8.13595 -6.41181 -6.15798 -3.84717 0.43675 0.86461 3.15229 3.24988 3.28894 3.32632 3.34872 3.39612 3.48745 3.65369 3.89605 3.94876 4.25246 4.26773 4.34145 4.59454 4.73642 4.81170 4.96935 4.99118 4.99205 5.12282 5.15670 5.19251 5.23746 5.27827 5.32712 5.37636 5.43024 5.48114 5.58311 5.65106 5.79473 5.82972 5.93925 6.04023 6.05073 6.10955 6.21783 6.29546 6.73286 6.76191 6.94073 7.02699 7.52888 7.66089 7.98031 8.41859 8.83663 9.29777 10.91700 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.002866 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.012783 B = 9767.658269 C =11554.395851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.150 3.850 3 H 0.085 0.915 4 C 0.041 3.959 5 N -0.513 5.513 6 C 0.025 3.975 7 C 0.135 3.865 8 H 0.059 0.941 9 C -0.144 4.144 10 C 0.087 3.913 11 C 0.048 3.952 12 N -0.439 5.439 13 C 0.041 3.959 14 C 0.053 3.947 15 N -0.400 5.400 16 N -0.716 5.716 17 C 0.535 3.465 18 O -0.527 6.527 19 C -0.150 4.150 20 S -0.063 6.063 21 C -0.532 4.532 22 H 0.072 0.928 23 C 0.072 3.928 24 N -0.868 5.868 25 Si 0.917 3.083 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.018 0.982 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.400 0.600 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.666 -8.693 -25.856 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.087 4.087 5 N -0.237 5.237 6 C -0.123 4.123 7 C 0.025 3.975 8 H 0.077 0.923 9 C -0.202 4.202 10 C -0.054 4.054 11 C -0.112 4.112 12 N -0.153 5.153 13 C -0.119 4.119 14 C -0.107 4.107 15 N -0.115 5.115 16 N -0.369 5.369 17 C 0.321 3.679 18 O -0.402 6.402 19 C -0.301 4.301 20 S 0.164 5.836 21 C -0.680 4.680 22 H 0.090 0.910 23 C -0.137 4.137 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.036 0.964 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.189 0.811 43 H 0.234 0.766 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.325 -6.788 -25.191 26.193 hybrid contribution 0.829 -2.151 0.036 2.305 sum 3.154 -8.938 -25.155 26.881 Atomic orbital electron populations 1.22168 0.95306 1.02050 1.02681 1.20804 0.93335 0.97525 0.83973 0.89689 1.22597 0.87767 1.01443 0.96921 1.61829 1.04624 1.11714 1.45538 1.22464 1.00810 0.89278 0.99754 1.20465 0.87694 0.95428 0.93936 0.92290 1.21913 1.01074 0.93975 1.03264 1.22155 0.97298 0.95907 0.90077 1.23480 0.90531 0.97675 0.99533 1.68456 1.10221 1.09956 1.26658 1.23800 1.02118 0.96585 0.89389 1.23988 0.90616 0.95730 1.00371 1.68506 1.09786 1.08003 1.25172 1.45778 1.68476 1.13957 1.08670 1.20204 0.76689 0.87123 0.83851 1.90677 1.49025 1.15840 1.84650 1.23499 1.03669 1.04576 0.98365 1.85345 1.86229 1.13165 0.98871 1.22919 1.50536 0.98173 0.96371 0.90972 1.24984 0.95221 0.95504 0.97945 1.70036 1.45872 1.13196 1.21314 0.86137 0.78490 0.80206 0.80786 1.19631 1.20625 1.20637 0.92529 0.91359 0.92151 0.93589 0.89636 0.96382 0.90493 0.90961 0.91964 0.90981 0.91195 0.81835 0.81429 0.81109 0.76634 0.89604 0.89266 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 37.15 0.35 -1.38 16 2 C 0.15 1.73 2.36 -67.93 -0.16 1.57 16 3 H 0.09 1.19 6.15 -51.93 -0.32 0.87 16 4 C 0.04 0.34 4.33 -3.82 -0.02 0.33 16 5 N -0.51 -4.92 4.06 -236.28 -0.96 -5.88 16 6 C 0.02 0.27 8.92 60.07 0.54 0.81 16 7 C 0.13 1.04 2.34 -68.86 -0.16 0.88 16 8 H 0.06 0.37 8.12 -51.93 -0.42 -0.05 16 9 C -0.14 -0.92 8.97 37.16 0.33 -0.59 16 10 C 0.09 0.79 4.94 -82.41 -0.41 0.38 16 11 C 0.05 0.40 10.90 -17.37 -0.19 0.21 16 12 N -0.44 -4.12 10.50 -13.06 -0.14 -4.26 16 13 C 0.04 0.33 11.22 -17.38 -0.20 0.13 16 14 C 0.05 0.47 11.22 -17.38 -0.20 0.28 16 15 N -0.40 -4.35 8.20 -9.29 -0.08 -4.43 16 16 N -0.72 -9.86 4.80 -53.81 -0.26 -10.12 16 17 C 0.54 10.21 7.81 -10.98 -0.09 10.13 16 18 O -0.53 -12.06 15.52 5.56 0.09 -11.98 16 19 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 20 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 21 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 22 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.54 13.22 55.49 0.73 -25.81 16 25 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.09 0.60 5.83 -51.93 -0.30 0.29 16 34 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.08 1.00 6.40 -51.93 -0.33 0.66 16 36 H 0.07 0.87 5.82 -51.93 -0.30 0.57 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.37 6.20 -51.93 -0.32 0.05 16 40 H 0.16 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 43 H 0.40 4.76 8.60 -40.82 -0.35 4.41 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.09 1.79 8.14 -51.91 -0.42 1.36 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -36.25 392.07 -8.68 -44.93 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.97 Total: 2.20 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 0.23 Total: -3.32 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.70 Total: -50.49 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.25 -8.68 -44.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.149 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds