Wall clock time and date at job start Tue Mar 31 2020 21:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09002 * 109.47082 * 2 1 4 4 C 1.52998 * 109.47111 * 239.99510 * 2 1 3 5 5 N 1.46904 * 109.46988 * 184.99995 * 4 2 1 6 6 C 1.46904 * 110.99896 * 293.95313 * 5 4 2 7 7 C 1.46903 * 110.99717 * 170.00517 * 5 4 2 8 8 H 1.08994 * 109.47198 * 59.99922 * 7 5 4 9 9 C 1.53003 * 109.46820 * 299.99474 * 7 5 4 10 10 C 1.50706 * 109.46978 * 179.97438 * 7 5 4 11 11 C 1.38386 * 120.00005 * 204.99708 * 10 7 5 12 12 N 1.32124 * 119.99712 * 180.02562 * 11 10 7 13 13 C 1.32158 * 120.00097 * 359.97438 * 12 11 10 14 14 C 1.38336 * 120.00075 * 0.26620 * 13 12 11 15 15 N 1.32127 * 120.00100 * 25.01885 * 10 7 5 16 16 N 1.46505 * 109.47365 * 119.99621 * 2 1 3 17 17 C 1.34774 * 119.99944 * 275.00337 * 16 2 1 18 18 O 1.21281 * 120.00342 * 359.97438 * 17 16 2 19 19 C 1.50706 * 119.99978 * 179.97438 * 17 16 2 20 20 S 1.80994 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00199 * 180.02562 * 20 19 17 22 22 H 1.08005 * 119.99610 * 0.02562 * 21 20 19 23 23 C 1.38793 * 120.00335 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00084 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00270 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46809 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46975 * 120.00069 * 25 23 21 28 28 H 1.48491 * 109.47478 * 240.00122 * 25 23 21 29 29 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47426 * 300.00167 * 1 2 3 31 31 H 1.08995 * 109.47702 * 60.00546 * 1 2 3 32 32 H 1.09003 * 109.47006 * 65.00113 * 4 2 1 33 33 H 1.08999 * 109.47226 * 304.99735 * 4 2 1 34 34 H 1.08998 * 109.47182 * 296.04338 * 6 5 4 35 35 H 1.08991 * 109.46889 * 56.05269 * 6 5 4 36 36 H 1.09003 * 109.46695 * 176.04638 * 6 5 4 37 37 H 1.09004 * 109.47181 * 180.02562 * 9 7 5 38 38 H 1.08994 * 109.47601 * 300.00201 * 9 7 5 39 39 H 1.09001 * 109.46840 * 60.00636 * 9 7 5 40 40 H 1.08005 * 120.00186 * 0.03930 * 11 10 7 41 41 H 1.08002 * 119.99718 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.00403 * 179.72028 * 14 13 12 43 43 H 0.97008 * 119.99890 * 94.99903 * 16 2 1 44 44 H 1.08999 * 109.47545 * 300.00373 * 19 17 16 45 45 H 1.09003 * 109.46648 * 59.99969 * 19 17 16 46 46 H 0.97000 * 120.00134 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1903 6 6 4.1309 0.4993 -1.2720 7 6 4.0107 -1.7145 -2.2454 8 1 3.7277 -1.3183 -3.2205 9 6 3.4108 -3.1109 -2.0685 10 6 5.5127 -1.7972 -2.1539 11 6 6.2578 -2.1145 -3.2760 12 7 7.5746 -2.1875 -3.1956 13 6 8.1801 -1.9570 -2.0437 14 6 7.4349 -1.6446 -0.9209 15 7 6.1181 -1.5671 -1.0022 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3571 18 8 1.8589 1.1587 2.4115 19 6 2.6489 -0.7286 3.5878 20 16 2.7106 0.4347 4.9731 21 6 3.3137 -0.6304 6.2405 22 1 3.5230 -1.6669 6.0205 23 6 3.5198 -0.1375 7.5215 24 7 3.2652 1.1258 7.7895 25 14 4.1586 -1.2669 8.8653 26 1 4.3648 -2.6290 8.3107 27 1 5.4486 -0.7424 9.3810 28 1 3.1708 -1.3271 9.9724 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.7516 -0.1584 -2.1369 33 1 1.6053 -1.7199 -1.2950 34 1 3.9101 0.9465 -2.2411 35 1 3.7380 1.1363 -0.4797 36 1 5.2101 0.3987 -1.1557 37 1 3.7871 -3.7698 -2.8512 38 1 3.6938 -3.5071 -1.0934 39 1 2.3245 -3.0507 -2.1350 40 1 5.7630 -2.3023 -4.2175 41 1 9.2564 -2.0170 -1.9780 42 1 7.9293 -1.4606 0.0215 43 1 2.2490 -1.6318 1.1527 44 1 1.9761 -1.5505 3.8327 45 1 3.6480 -1.1211 3.3986 46 1 3.4088 1.4702 8.6848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716471190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:53 Heat of formation + Delta-G solvation = -1.931214 kcal Electronic energy + Delta-G solvation = -26941.775897 eV Core-core repulsion = 23185.253901 eV Total energy + Delta-G solvation = -3756.521996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13819 -40.73882 -39.08315 -36.37248 -34.95675 -34.57173 -33.52690 -32.33539 -31.00330 -29.91928 -27.96524 -27.64336 -25.95752 -25.62380 -24.83831 -22.52551 -21.57717 -21.13296 -19.80887 -18.60008 -17.92482 -17.80853 -17.47614 -16.87783 -16.80472 -16.57922 -16.22055 -16.09085 -15.78143 -15.46571 -15.29479 -14.69558 -14.61809 -14.41823 -14.03702 -13.86782 -13.78908 -13.33331 -13.18914 -13.17230 -13.13785 -12.90298 -12.86237 -12.68731 -12.54871 -12.47167 -12.39612 -12.14154 -11.83954 -11.69661 -11.55284 -11.14593 -10.81303 -10.24477 -10.17807 -9.95532 -9.88800 -9.21487 -8.63744 -8.33389 -6.10626 -0.16621 0.21620 1.29531 1.41529 1.48893 1.60664 1.75781 2.28131 2.42000 2.71026 2.83037 3.00411 3.09087 3.36380 3.39764 3.63874 3.76656 3.81682 4.09086 4.17345 4.19364 4.24840 4.32461 4.36683 4.42403 4.44358 4.47172 4.51624 4.55307 4.59595 4.66461 4.74251 4.81538 4.88273 5.00308 5.05951 5.14510 5.32693 5.35378 5.43033 5.44775 5.66608 6.06142 6.09804 6.21404 6.41229 6.68650 6.90556 7.07827 7.41148 8.76156 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011086 B = 0.002866 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.012783 B = 9767.658269 C =11554.395851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.057 0.943 4 C 0.050 3.950 5 N -0.528 5.528 6 C 0.035 3.965 7 C 0.136 3.864 8 H 0.082 0.918 9 C -0.139 4.139 10 C 0.077 3.923 11 C 0.049 3.951 12 N -0.460 5.460 13 C 0.042 3.958 14 C 0.038 3.962 15 N -0.434 5.434 16 N -0.689 5.689 17 C 0.536 3.464 18 O -0.572 6.572 19 C -0.126 4.126 20 S -0.150 6.150 21 C -0.544 4.544 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.258 1.258 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.192 0.808 41 H 0.194 0.806 42 H 0.181 0.819 43 H 0.413 0.587 44 H 0.104 0.896 45 H 0.100 0.900 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -11.461 -27.864 30.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.077 4.077 5 N -0.253 5.253 6 C -0.114 4.114 7 C 0.026 3.974 8 H 0.100 0.900 9 C -0.197 4.197 10 C -0.064 4.064 11 C -0.111 4.111 12 N -0.174 5.174 13 C -0.117 4.117 14 C -0.121 4.121 15 N -0.149 5.149 16 N -0.342 5.342 17 C 0.322 3.678 18 O -0.451 6.451 19 C -0.277 4.277 20 S 0.077 5.923 21 C -0.692 4.692 22 H 0.098 0.902 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.821 3.179 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.198 1.198 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.209 0.791 41 H 0.211 0.789 42 H 0.198 0.802 43 H 0.249 0.751 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.267 -9.600 -27.250 28.980 hybrid contribution 0.847 -1.300 0.516 1.635 sum 3.114 -10.900 -26.734 29.038 Atomic orbital electron populations 1.22102 0.94087 1.03205 1.02155 1.21009 0.94225 0.96453 0.84179 0.92483 1.22556 0.87101 1.02613 0.95462 1.61750 1.05218 1.11082 1.47213 1.22256 0.99815 0.89913 0.99379 1.20602 0.86846 0.95705 0.94206 0.89998 1.21897 1.02035 0.93124 1.02646 1.22438 0.98119 0.95964 0.89891 1.23896 0.90262 0.96617 1.00304 1.68513 1.10967 1.10755 1.27191 1.24167 1.03273 0.95537 0.88739 1.24229 0.90428 0.96150 1.01309 1.68450 1.10836 1.09057 1.26589 1.45573 1.66498 1.14317 1.07779 1.19911 0.76712 0.86499 0.84712 1.90665 1.51400 1.17688 1.85362 1.23331 1.04954 1.03040 0.96402 1.85509 1.86612 1.17442 1.02712 1.23224 1.50742 0.98367 0.96881 0.90217 1.26127 0.95117 0.97226 1.00718 1.70196 1.46996 1.15455 1.22179 0.84906 0.77879 0.78190 0.76968 1.18130 1.19863 1.19820 0.90449 0.94954 0.89650 0.91414 0.87136 0.94947 0.93382 0.92452 0.90464 0.93025 0.89513 0.79113 0.78948 0.80187 0.75096 0.87750 0.88183 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.48 71.98 0.68 -2.38 16 2 C 0.15 3.22 2.36 44.99 0.11 3.32 16 3 H 0.06 1.63 6.15 -2.39 -0.01 1.61 16 4 C 0.05 0.69 4.33 86.30 0.37 1.07 16 5 N -0.53 -9.13 4.06 -901.44 -3.66 -12.79 16 6 C 0.03 0.75 8.92 127.69 1.14 1.88 16 7 C 0.14 1.71 2.34 44.17 0.10 1.81 16 8 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 9 C -0.14 -1.31 8.97 71.98 0.65 -0.67 16 10 C 0.08 1.28 4.94 42.55 0.21 1.49 16 11 C 0.05 0.71 10.90 84.68 0.92 1.63 16 12 N -0.46 -7.95 10.50 -195.22 -2.05 -10.00 16 13 C 0.04 0.63 11.22 84.67 0.95 1.58 16 14 C 0.04 0.68 11.22 84.67 0.95 1.63 16 15 N -0.43 -9.26 8.20 -183.29 -1.50 -10.76 16 16 N -0.69 -18.44 4.80 -442.53 -2.12 -20.56 16 17 C 0.54 20.81 7.81 87.66 0.68 21.50 16 18 O -0.57 -27.40 15.52 -3.03 -0.05 -27.45 16 19 C -0.13 -5.32 6.16 71.24 0.44 -4.88 16 20 S -0.15 -8.61 20.57 -56.49 -1.16 -9.78 16 21 C -0.54 -31.98 9.50 67.95 0.65 -31.34 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.74 5.49 84.86 0.47 1.20 16 24 N -0.91 -57.02 13.22 21.65 0.29 -56.73 16 25 Si 1.00 44.52 29.55 68.60 2.03 46.54 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 33 H 0.11 1.02 5.83 -2.39 -0.01 1.01 16 34 H 0.03 0.57 8.14 -2.39 -0.02 0.56 16 35 H 0.05 1.29 6.40 -2.39 -0.02 1.28 16 36 H 0.06 1.40 5.82 -2.39 -0.01 1.39 16 37 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.52 6.20 -2.39 -0.01 0.50 16 40 H 0.19 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.41 9.02 8.60 -92.70 -0.80 8.23 16 44 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 45 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 46 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -82.95 392.07 0.28 -82.68 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.19 Total: 21.00 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 8.32 Total: -2.15 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -9.05 Total: -110.85 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.05 Total: -27.45 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.78 kcal Total: -82.95 0.28 -82.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716471190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.745 kcal (2) G-P(sol) polarization free energy of solvation -82.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds