Wall clock time and date at job start Tue Mar 31 2020 21:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34946 * 126.03499 * 124.71457 * 3 2 1 5 5 C 1.35319 * 107.73997 * 179.84378 * 4 3 2 6 6 C 1.39866 * 107.92536 * 0.42044 * 5 4 3 7 7 C 1.50701 * 125.90275 * 179.71336 * 6 5 4 8 8 N 1.46901 * 109.46536 * 95.00506 * 7 6 5 9 9 C 1.47476 * 110.99981 * 265.97183 * 8 7 6 10 10 C 1.53519 * 87.93253 * 221.30047 * 9 8 7 11 11 N 1.46496 * 114.34507 * 139.68679 * 10 9 8 12 12 C 1.46507 * 119.99997 * 326.07349 * 11 10 9 13 13 C 1.34770 * 120.00444 * 146.07783 * 11 10 9 14 14 O 1.21285 * 119.99779 * 359.97438 * 13 11 10 15 15 C 1.50697 * 120.00604 * 179.97438 * 13 11 10 16 16 S 1.81001 * 109.47656 * 179.97438 * 15 13 11 17 17 C 1.76194 * 99.99930 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00428 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99753 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00082 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99965 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47036 * 89.99925 * 21 19 17 23 23 H 1.48495 * 109.47173 * 209.99893 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00123 * 21 19 17 25 25 C 1.47479 * 110.99648 * 169.99921 * 8 7 6 26 26 N 1.30843 * 108.19747 * 359.74120 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 28 28 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 31 31 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 32 32 H 1.07992 * 126.13279 * 0.02562 * 4 3 2 33 33 H 1.08007 * 126.03685 * 180.16470 * 5 4 3 34 34 H 1.08993 * 109.46935 * 215.00427 * 7 6 5 35 35 H 1.08998 * 109.47283 * 335.00800 * 7 6 5 36 36 H 1.08999 * 113.47874 * 336.06228 * 9 8 7 37 37 H 1.08999 * 113.47642 * 106.53271 * 9 8 7 38 38 H 1.09003 * 114.16963 * 272.37893 * 10 9 8 39 39 H 1.08994 * 109.47088 * 90.00143 * 12 11 10 40 40 H 1.08997 * 109.47197 * 210.00416 * 12 11 10 41 41 H 1.09005 * 109.46561 * 330.00376 * 12 11 10 42 42 H 1.08994 * 109.47093 * 300.00164 * 15 13 11 43 43 H 1.09011 * 109.47093 * 59.99583 * 15 13 11 44 44 H 0.97001 * 119.99813 * 179.97438 * 20 19 17 45 45 H 1.08997 * 113.48122 * 253.46412 * 25 8 7 46 46 H 1.08999 * 113.47913 * 23.88155 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0719 3.2135 0.5458 6 6 2.3121 3.4726 -0.5995 7 6 2.2342 4.7889 -1.3293 8 7 3.1979 4.7916 -2.4380 9 6 4.4758 5.4017 -2.0260 10 6 4.5152 6.1062 -3.3894 11 7 4.9858 7.4926 -3.3395 12 6 4.6791 8.3288 -2.1762 13 6 5.7009 7.9989 -4.3635 14 8 5.9551 7.3065 -5.3263 15 6 6.1845 9.4252 -4.3124 16 16 7.1080 9.8038 -5.8223 17 6 7.5424 11.4812 -5.5028 18 1 7.2313 11.9538 -4.5830 19 6 8.2836 12.1955 -6.4340 20 7 8.6077 13.4489 -6.1956 21 14 8.8212 11.3783 -8.0254 22 1 7.7803 11.5851 -9.0642 23 1 10.1014 11.9768 -8.4814 24 1 9.0091 9.9232 -7.7957 25 6 2.9890 5.9573 -3.3169 26 7 1.6801 2.3749 -0.9276 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3109 1.4155 1.7418 33 1 3.7052 3.9203 1.0616 34 1 1.2273 4.9271 -1.7228 35 1 2.4700 5.6005 -0.6410 36 1 4.3781 6.0884 -1.1852 37 1 5.2784 4.6772 -1.8883 38 1 4.9835 5.5210 -4.1808 39 1 5.4716 8.2250 -1.4351 40 1 4.6064 9.3710 -2.4870 41 1 3.7311 8.0124 -1.7412 42 1 5.3294 10.0961 -4.2313 43 1 6.8338 9.5580 -3.4468 44 1 9.1260 13.9479 -6.8461 45 1 2.5316 5.7038 -4.2732 46 1 2.4935 6.7919 -2.8208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716735984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:36 Heat of formation + Delta-G solvation = 92.523572 kcal Electronic energy + Delta-G solvation = -25860.961703 eV Core-core repulsion = 22108.535573 eV Total energy + Delta-G solvation = -3752.426129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55781 -40.76317 -38.75439 -35.32754 -34.69974 -32.43253 -31.88873 -30.25036 -29.59388 -28.46343 -27.01173 -26.18003 -25.62941 -24.80443 -23.16810 -21.44027 -20.52788 -19.91183 -19.03838 -17.70917 -17.47354 -17.00932 -16.41296 -15.95539 -15.88457 -15.35270 -14.99718 -14.94745 -14.76160 -14.37345 -13.89002 -13.75826 -13.62929 -13.34422 -13.23159 -12.97824 -12.90936 -12.78375 -12.68489 -12.52394 -12.34390 -12.19837 -11.88054 -11.81237 -11.25635 -11.13868 -11.04155 -10.98862 -10.74889 -10.58638 -9.85938 -9.66159 -9.48053 -9.19552 -8.99616 -8.84890 -8.61218 -8.48310 -6.91389 -6.28430 -4.00139 1.59982 2.15236 2.42670 2.70010 2.88735 3.15746 3.34282 3.51846 3.58069 3.89907 4.00064 4.28040 4.33959 4.42560 4.45062 4.50629 4.55451 4.67624 4.68777 4.75711 4.91300 4.95567 5.05953 5.08534 5.10789 5.16244 5.17423 5.22051 5.33703 5.35703 5.46165 5.51289 5.59722 5.60849 5.62168 5.73311 5.77807 5.92949 5.98531 6.00429 6.34668 6.48890 6.70016 6.72297 7.40816 7.47484 7.94524 8.41149 8.41923 9.17928 10.80713 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.001734 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.363164 B =16140.203476 C =16406.950464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 N -0.374 5.374 4 C 0.050 3.950 5 C -0.266 4.266 6 C 0.085 3.915 7 C 0.102 3.898 8 N -0.458 5.458 9 C -0.011 4.011 10 C 0.125 3.875 11 N -0.612 5.612 12 C 0.076 3.924 13 C 0.534 3.466 14 O -0.514 6.514 15 C -0.121 4.121 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.856 3.144 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.016 4.016 26 N -0.276 5.276 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.144 0.856 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 45 H 0.094 0.906 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.716 -23.690 18.702 34.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.157 5.157 4 C -0.095 4.095 5 C -0.295 4.295 6 C -0.082 4.082 7 C -0.028 4.028 8 N -0.181 5.181 9 C -0.141 4.141 10 C 0.020 3.980 11 N -0.348 5.348 12 C -0.068 4.068 13 C 0.322 3.678 14 O -0.388 6.388 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.112 4.112 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.146 4.146 26 N -0.098 5.098 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.189 0.811 33 H 0.162 0.838 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.148 -25.948 16.160 34.572 hybrid contribution 0.509 1.850 1.718 2.576 sum -15.639 -24.098 17.879 33.837 Atomic orbital electron populations 1.22054 0.93784 1.02854 1.03615 1.21679 0.96107 0.77551 1.03719 1.48743 1.35866 1.10073 1.21006 1.22510 0.95831 0.94933 0.96271 1.21370 1.09512 0.96833 1.01831 1.21941 0.96469 0.94650 0.95145 1.20943 0.98462 0.90839 0.92542 1.68856 1.02658 1.34504 1.12069 1.24453 0.94654 0.97675 0.97307 1.22574 0.93783 0.82847 0.98816 1.47770 1.55253 1.11858 1.19871 1.21799 1.00747 0.95847 0.88360 1.20344 0.76785 0.89051 0.81634 1.90700 1.55365 1.60702 1.32058 1.23322 1.03838 0.94759 1.05220 1.84815 1.67843 1.16710 1.22303 1.22307 1.40522 0.94540 1.09502 0.89400 1.24707 0.94204 0.94208 0.98128 1.69939 1.37201 1.08410 1.36143 0.86740 0.79076 0.82376 0.83700 1.19209 1.19950 1.15900 1.24395 0.98083 0.92597 0.99480 1.77307 1.23626 0.96420 1.12496 0.92179 0.90983 0.90717 0.89745 0.88756 0.81149 0.83808 0.89340 0.91525 0.90440 0.89086 0.85039 0.92291 0.90176 0.91537 0.88480 0.88435 0.91953 0.88806 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.10 37.16 0.38 -0.43 16 2 C 0.13 0.67 7.23 -4.04 -0.03 0.64 16 3 N -0.37 -3.27 3.68 -61.36 -0.23 -3.49 16 4 C 0.05 0.38 11.45 -17.22 -0.20 0.18 16 5 C -0.27 -2.32 10.74 -40.01 -0.43 -2.75 16 6 C 0.09 0.89 6.80 -82.40 -0.56 0.33 16 7 C 0.10 0.92 5.37 -4.97 -0.03 0.89 16 8 N -0.46 -4.75 6.32 -246.10 -1.55 -6.31 16 9 C -0.01 -0.11 7.13 -7.54 -0.05 -0.16 16 10 C 0.12 1.49 4.54 -67.71 -0.31 1.18 16 11 N -0.61 -8.01 3.11 -173.61 -0.54 -8.55 16 12 C 0.08 0.71 8.92 59.85 0.53 1.24 16 13 C 0.53 9.55 7.69 -10.99 -0.08 9.47 16 14 O -0.51 -11.15 15.37 5.55 0.09 -11.06 16 15 C -0.12 -2.32 4.71 36.00 0.17 -2.15 16 16 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 17 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 18 H 0.09 2.62 8.03 -52.49 -0.42 2.19 16 19 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 20 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 21 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 25 C -0.02 -0.16 7.24 -7.54 -0.05 -0.21 16 26 N -0.28 -3.20 12.42 33.67 0.42 -2.78 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.07 0.47 7.30 -51.93 -0.38 0.09 16 36 H 0.08 0.61 5.87 -51.93 -0.30 0.30 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.13 1.88 7.28 -51.93 -0.38 1.50 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 41 H 0.07 0.46 6.20 -51.93 -0.32 0.14 16 42 H 0.10 1.72 7.40 -51.92 -0.38 1.34 16 43 H 0.10 1.74 8.11 -51.91 -0.42 1.32 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 0.64 6.73 -51.93 -0.35 0.29 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -36.36 390.51 -9.41 -45.77 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.09 Total: -1.55 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.45 Total: -3.69 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -1.13 Total: -46.82 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.36 -9.41 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716735984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.289 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds