Wall clock time and date at job start Tue Mar 31 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.34946 * 126.03499 * 124.71457 * 3 2 1 5 5 C 1.35319 * 107.73997 * 179.84378 * 4 3 2 6 6 C 1.39866 * 107.92536 * 0.42044 * 5 4 3 7 7 C 1.50701 * 125.90275 * 179.71336 * 6 5 4 8 8 N 1.46901 * 109.46536 * 95.00506 * 7 6 5 9 9 C 1.47476 * 110.99981 * 265.97183 * 8 7 6 10 10 C 1.53519 * 87.93253 * 221.30047 * 9 8 7 11 11 N 1.46496 * 114.34507 * 139.68679 * 10 9 8 12 12 C 1.46507 * 119.99997 * 326.07349 * 11 10 9 13 13 C 1.34770 * 120.00444 * 146.07783 * 11 10 9 14 14 O 1.21285 * 119.99779 * 359.97438 * 13 11 10 15 15 C 1.50697 * 120.00604 * 179.97438 * 13 11 10 16 16 S 1.81001 * 109.47656 * 179.97438 * 15 13 11 17 17 C 1.76194 * 99.99930 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00428 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99753 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00082 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99965 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47036 * 89.99925 * 21 19 17 23 23 H 1.48495 * 109.47173 * 209.99893 * 21 19 17 24 24 H 1.48500 * 109.47075 * 330.00123 * 21 19 17 25 25 C 1.47479 * 110.99648 * 169.99921 * 8 7 6 26 26 N 1.30843 * 108.19747 * 359.74120 * 6 5 4 27 27 H 1.09001 * 109.46832 * 299.99854 * 1 2 3 28 28 H 1.08996 * 109.46952 * 59.99873 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 239.99872 * 2 1 3 31 31 H 1.09004 * 109.47261 * 120.00128 * 2 1 3 32 32 H 1.07992 * 126.13279 * 0.02562 * 4 3 2 33 33 H 1.08007 * 126.03685 * 180.16470 * 5 4 3 34 34 H 1.08993 * 109.46935 * 215.00427 * 7 6 5 35 35 H 1.08998 * 109.47283 * 335.00800 * 7 6 5 36 36 H 1.08999 * 113.47874 * 336.06228 * 9 8 7 37 37 H 1.08999 * 113.47642 * 106.53271 * 9 8 7 38 38 H 1.09003 * 114.16963 * 272.37893 * 10 9 8 39 39 H 1.08994 * 109.47088 * 90.00143 * 12 11 10 40 40 H 1.08997 * 109.47197 * 210.00416 * 12 11 10 41 41 H 1.09005 * 109.46561 * 330.00376 * 12 11 10 42 42 H 1.08994 * 109.47093 * 300.00164 * 15 13 11 43 43 H 1.09011 * 109.47093 * 59.99583 * 15 13 11 44 44 H 0.97001 * 119.99813 * 179.97438 * 20 19 17 45 45 H 1.08997 * 113.48122 * 253.46412 * 25 8 7 46 46 H 1.08999 * 113.47913 * 23.88155 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8689 1.9225 0.8970 5 6 3.0719 3.2135 0.5458 6 6 2.3121 3.4726 -0.5995 7 6 2.2342 4.7889 -1.3293 8 7 3.1979 4.7916 -2.4380 9 6 4.4758 5.4017 -2.0260 10 6 4.5152 6.1062 -3.3894 11 7 4.9858 7.4926 -3.3395 12 6 4.6791 8.3288 -2.1762 13 6 5.7009 7.9989 -4.3635 14 8 5.9551 7.3065 -5.3263 15 6 6.1845 9.4252 -4.3124 16 16 7.1080 9.8038 -5.8223 17 6 7.5424 11.4812 -5.5028 18 1 7.2313 11.9538 -4.5830 19 6 8.2836 12.1955 -6.4340 20 7 8.6077 13.4489 -6.1956 21 14 8.8212 11.3783 -8.0254 22 1 7.7803 11.5851 -9.0642 23 1 10.1014 11.9768 -8.4814 24 1 9.0091 9.9232 -7.7957 25 6 2.9890 5.9573 -3.3169 26 7 1.6801 2.3749 -0.9276 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3109 1.4155 1.7418 33 1 3.7052 3.9203 1.0616 34 1 1.2273 4.9271 -1.7228 35 1 2.4700 5.6005 -0.6410 36 1 4.3781 6.0884 -1.1852 37 1 5.2784 4.6772 -1.8883 38 1 4.9835 5.5210 -4.1808 39 1 5.4716 8.2250 -1.4351 40 1 4.6064 9.3710 -2.4870 41 1 3.7311 8.0124 -1.7412 42 1 5.3294 10.0961 -4.2313 43 1 6.8338 9.5580 -3.4468 44 1 9.1260 13.9479 -6.8461 45 1 2.5316 5.7038 -4.2732 46 1 2.4935 6.7919 -2.8208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716735984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:35 Heat of formation + Delta-G solvation = 65.671179 kcal Electronic energy + Delta-G solvation = -25862.126110 eV Core-core repulsion = 22108.535573 eV Total energy + Delta-G solvation = -3753.590537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21321 -41.66180 -39.99071 -36.27310 -35.40651 -34.65775 -32.59950 -31.15961 -30.52737 -29.30489 -27.89158 -27.83295 -26.96496 -25.61308 -23.73732 -21.99201 -21.63718 -20.57788 -20.11919 -19.59477 -18.41154 -17.89534 -17.42593 -17.08698 -17.00883 -16.62044 -16.22728 -16.01198 -15.74515 -15.27854 -15.06906 -14.83856 -14.60310 -14.36703 -14.17189 -14.03416 -13.87161 -13.78314 -13.47882 -13.35851 -13.18381 -13.14924 -13.01345 -12.94746 -12.64631 -12.61136 -12.29888 -11.94195 -11.88749 -11.83353 -11.38260 -11.16041 -10.97739 -10.50474 -10.25862 -9.94007 -9.68351 -9.43898 -8.98979 -8.50464 -6.21078 0.97360 1.01633 1.31963 1.46372 1.50429 1.53788 1.66801 1.80694 2.07008 2.26001 2.69835 2.87979 3.09672 3.40404 3.55210 3.62833 3.80076 3.90253 3.97239 4.08715 4.12995 4.16143 4.21763 4.27435 4.32038 4.37156 4.45193 4.52143 4.60005 4.63155 4.73226 4.78496 4.81469 4.88583 4.92969 4.93825 4.98325 5.12720 5.20165 5.29257 5.48777 5.72064 5.73957 5.96282 6.12622 6.22926 6.23666 6.84802 6.95157 7.08129 8.61708 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.039970 B = 0.001734 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.363164 B =16140.203476 C =16406.950464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.122 3.878 3 N -0.379 5.379 4 C 0.055 3.945 5 C -0.283 4.283 6 C 0.068 3.932 7 C 0.104 3.896 8 N -0.476 5.476 9 C 0.006 3.994 10 C 0.112 3.888 11 N -0.596 5.596 12 C 0.064 3.936 13 C 0.534 3.466 14 O -0.563 6.563 15 C -0.104 4.104 16 S -0.182 6.182 17 C -0.527 4.527 18 H 0.064 0.936 19 C 0.048 3.952 20 N -0.916 5.916 21 Si 0.912 3.088 22 H -0.263 1.263 23 H -0.259 1.259 24 H -0.238 1.238 25 C -0.004 4.004 26 N -0.324 5.324 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.209 0.791 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.081 0.919 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.378 -25.036 21.078 36.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 N -0.162 5.162 4 C -0.091 4.091 5 C -0.313 4.313 6 C -0.098 4.098 7 C -0.025 4.025 8 N -0.200 5.200 9 C -0.123 4.123 10 C 0.008 3.992 11 N -0.329 5.329 12 C -0.078 4.078 13 C 0.321 3.679 14 O -0.441 6.441 15 C -0.255 4.255 16 S 0.045 5.955 17 C -0.674 4.674 18 H 0.083 0.917 19 C -0.158 4.158 20 N -0.554 5.554 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.183 1.183 24 H -0.162 1.162 25 C -0.134 4.134 26 N -0.147 5.147 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.226 0.774 33 H 0.178 0.822 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.844 -27.299 18.585 37.072 hybrid contribution 0.596 2.161 1.169 2.528 sum -16.248 -25.138 19.753 35.862 Atomic orbital electron populations 1.21995 0.93841 1.03830 1.02006 1.21999 0.96141 0.76334 1.05334 1.49052 1.35901 1.10650 1.20644 1.23161 0.94645 0.94830 0.96482 1.21674 1.09996 0.97906 1.01715 1.22257 0.96771 0.94828 0.95925 1.21000 0.97862 0.91277 0.92402 1.68840 1.03360 1.34765 1.13007 1.24384 0.94174 0.97399 0.96350 1.22587 0.94999 0.81885 0.99761 1.47722 1.53173 1.12575 1.19426 1.22166 1.03185 0.95271 0.87169 1.20101 0.77358 0.88155 0.82278 1.90685 1.57727 1.61480 1.34247 1.23289 1.03815 0.96367 1.02005 1.84786 1.69421 1.14381 1.26919 1.22441 1.40172 0.96208 1.08600 0.91734 1.25516 0.94375 0.94752 1.01122 1.70011 1.38188 1.09636 1.37529 0.85901 0.79333 0.81270 0.80085 1.18792 1.18320 1.16239 1.24321 0.96357 0.93327 0.99399 1.77225 1.25339 0.97661 1.14505 0.92613 0.93646 0.88437 0.89969 0.85261 0.77435 0.82215 0.89696 0.89015 0.87671 0.89694 0.88184 0.90421 0.90163 0.88244 0.86732 0.86803 0.91394 0.90015 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.10 71.98 0.73 -0.67 16 2 C 0.12 1.05 7.23 86.38 0.62 1.67 16 3 N -0.38 -6.09 3.68 -348.05 -1.28 -7.37 16 4 C 0.05 0.68 11.45 83.54 0.96 1.64 16 5 C -0.28 -4.30 10.74 21.99 0.24 -4.07 16 6 C 0.07 1.34 6.80 43.10 0.29 1.63 16 7 C 0.10 1.67 5.37 85.56 0.46 2.13 16 8 N -0.48 -9.18 6.32 -932.51 -5.89 -15.07 16 9 C 0.01 0.11 7.13 83.58 0.60 0.70 16 10 C 0.11 2.56 4.54 45.45 0.21 2.77 16 11 N -0.60 -14.44 3.11 -821.58 -2.56 -17.00 16 12 C 0.06 0.95 8.92 127.77 1.14 2.09 16 13 C 0.53 18.72 7.69 87.66 0.67 19.39 16 14 O -0.56 -24.79 15.37 -3.04 -0.05 -24.84 16 15 C -0.10 -3.90 4.71 71.23 0.34 -3.56 16 16 S -0.18 -9.24 18.55 -56.49 -1.05 -10.28 16 17 C -0.53 -30.53 10.04 67.96 0.68 -29.84 16 18 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 19 C 0.05 2.80 5.50 84.86 0.47 3.27 16 20 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 21 Si 0.91 45.22 27.74 68.60 1.90 47.13 16 22 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.24 -11.88 6.74 99.48 0.67 -11.20 16 25 C 0.00 -0.08 7.24 83.58 0.61 0.52 16 26 N -0.32 -7.38 12.42 -47.38 -0.59 -7.96 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.13 0.18 8.07 -2.38 -0.02 0.16 16 32 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 35 H 0.09 0.96 7.30 -2.39 -0.02 0.94 16 36 H 0.11 1.18 5.87 -2.39 -0.01 1.17 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.10 2.96 7.28 -2.39 -0.02 2.95 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.26 6.44 -2.39 -0.02 1.24 16 41 H 0.10 0.88 6.20 -2.38 -0.01 0.86 16 42 H 0.11 3.89 7.40 -2.40 -0.02 3.88 16 43 H 0.11 3.89 8.11 -2.39 -0.02 3.88 16 44 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.10 1.36 6.73 -2.39 -0.02 1.35 16 Total: -1.00 -81.98 390.51 -0.27 -82.25 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.94 Total: 10.70 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 8.00 Total: -2.33 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -10.01 Total: -102.63 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.05 Total: -24.84 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.13 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.05 Total: -10.28 kcal Total: -81.98 -0.27 -82.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716735984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.917 kcal (2) G-P(sol) polarization free energy of solvation -81.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds