Wall clock time and date at job start Tue Mar 31 2020 20:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 N 1.46497 * 109.47233 * 120.00265 * 2 1 3 5 5 C 1.36934 * 120.00054 * 274.99992 * 4 2 1 6 6 H 1.08001 * 120.00153 * 0.02562 * 5 4 2 7 7 C 1.38816 * 119.99973 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99981 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00146 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46968 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47178 * 120.00058 * 9 7 5 12 12 H 1.48500 * 109.47068 * 240.00455 * 9 7 5 13 13 C 1.53007 * 109.47189 * 240.00323 * 2 1 3 14 14 H 1.08997 * 110.91199 * 304.57116 * 13 2 1 15 15 C 1.55157 * 111.00012 * 68.47131 * 13 2 1 16 16 C 1.54339 * 103.01672 * 153.38159 * 15 13 2 17 17 N 1.47022 * 107.26669 * 338.13855 * 16 15 13 18 18 C 1.34777 * 125.64973 * 178.85178 * 17 16 15 19 19 O 1.21282 * 119.99828 * 179.69605 * 18 17 16 20 20 C 1.50700 * 119.99980 * 359.68764 * 18 17 16 21 21 C 1.53002 * 109.47080 * 180.02562 * 20 18 17 22 22 O 1.42903 * 109.46823 * 180.02562 * 21 20 18 23 23 C 1.42895 * 113.99857 * 179.97438 * 22 21 20 24 24 C 1.53002 * 109.47321 * 180.02562 * 23 22 21 25 25 F 1.39897 * 109.46941 * 59.99910 * 24 23 22 26 26 F 1.39892 * 109.47240 * 180.02562 * 24 23 22 27 27 F 1.39901 * 109.46587 * 300.00140 * 24 23 22 28 28 C 1.47430 * 108.70260 * 358.58436 * 17 16 15 29 29 H 1.09001 * 109.46996 * 174.74352 * 1 2 3 30 30 H 1.08996 * 109.47367 * 294.74402 * 1 2 3 31 31 H 1.08995 * 109.47207 * 54.74918 * 1 2 3 32 32 H 0.97005 * 120.00144 * 95.00275 * 4 2 1 33 33 H 0.97003 * 119.99981 * 179.97438 * 8 7 5 34 34 H 1.08995 * 110.71920 * 271.93843 * 15 13 2 35 35 H 1.08996 * 110.72399 * 35.03890 * 15 13 2 36 36 H 1.08998 * 109.98916 * 218.66515 * 16 15 13 37 37 H 1.08996 * 109.78223 * 97.49475 * 16 15 13 38 38 H 1.09004 * 109.47040 * 60.00161 * 20 18 17 39 39 H 1.09002 * 109.47318 * 300.00803 * 20 18 17 40 40 H 1.08996 * 109.47178 * 299.99942 * 21 20 18 41 41 H 1.08993 * 109.46814 * 60.00521 * 21 20 18 42 42 H 1.08996 * 109.47560 * 300.00552 * 23 22 21 43 43 H 1.09004 * 109.46646 * 60.00332 * 23 22 21 44 44 H 1.08997 * 110.36506 * 143.19039 * 28 17 16 45 45 H 1.08990 * 110.36629 * 265.40915 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0402 2.4244 7 6 2.6114 -0.6622 3.5092 8 7 2.9244 -1.9393 3.4500 9 14 2.7891 0.2694 5.1186 10 1 2.3742 1.6816 4.9215 11 1 1.9280 -0.3593 6.1522 12 1 4.2059 0.2265 5.5615 13 6 2.0400 -0.7212 -1.2493 14 1 1.6250 -1.7270 -1.3146 15 6 1.7242 0.0951 -2.5305 16 6 2.8294 -0.3537 -3.5099 17 7 3.9377 -0.8852 -2.7033 18 6 5.0855 -1.3996 -3.1876 19 8 5.9371 -1.8058 -2.4255 20 6 5.3106 -1.4703 -4.6760 21 6 6.6806 -2.0914 -4.9557 22 8 6.8942 -2.1579 -6.3671 23 6 8.1521 -2.7250 -6.7385 24 6 8.2721 -2.7454 -8.2636 25 9 8.1863 -1.4386 -8.7556 26 9 9.5033 -3.3012 -8.6272 27 9 7.2359 -3.5156 -8.8026 28 6 3.5885 -0.7564 -1.2767 29 1 -0.3633 -1.0234 -0.0941 30 1 -0.3634 0.4301 0.9333 31 1 -0.3633 0.5931 -0.8392 32 1 2.2491 -1.6318 1.1525 33 1 3.2478 -2.3966 4.2420 34 1 0.7371 -0.1594 -2.9163 35 1 1.7958 1.1647 -2.3337 36 1 3.1737 0.4968 -4.0982 37 1 2.4444 -1.1316 -4.1691 38 1 5.2740 -0.4655 -5.0971 39 1 4.5337 -2.0839 -5.1323 40 1 7.4576 -1.4781 -4.4995 41 1 6.7167 -3.0962 -4.5348 42 1 8.9594 -2.1249 -6.3189 43 1 8.2190 -3.7431 -6.3548 44 1 3.9583 -1.6153 -0.7167 45 1 3.9979 0.1672 -0.8679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716967835.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:48 Heat of formation + Delta-G solvation = -251.247880 kcal Electronic energy + Delta-G solvation = -29112.170657 eV Core-core repulsion = 24327.935117 eV Total energy + Delta-G solvation = -4784.235541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.12130 -48.67478 -48.60389 -41.22414 -39.48307 -38.82966 -36.77428 -34.32183 -33.27896 -31.93570 -30.44318 -29.99090 -29.38906 -26.00171 -25.45951 -24.28719 -23.55586 -22.81774 -21.06444 -20.18216 -19.68093 -19.65439 -19.15550 -18.71611 -18.28058 -17.62020 -17.17903 -17.02066 -16.53023 -16.27540 -15.65069 -15.53728 -15.44945 -15.39513 -15.10660 -15.05269 -14.90162 -14.78418 -14.76958 -14.57481 -14.33694 -13.97379 -13.78865 -13.52268 -13.33974 -13.08005 -12.88287 -12.78442 -12.68765 -12.54268 -12.42138 -12.31241 -12.14513 -12.02877 -11.66481 -11.51405 -11.35747 -11.01482 -10.94918 -10.93066 -9.66937 -8.97971 -7.92374 -5.19587 1.35130 1.46143 1.46869 1.55393 1.56349 1.88250 2.38135 2.56639 2.82597 2.99212 3.34351 3.41796 3.50981 3.66949 3.75242 3.88527 3.98243 4.06229 4.10304 4.11543 4.22555 4.37387 4.43708 4.47940 4.58066 4.66318 4.67510 4.76754 4.79833 4.89607 4.93190 5.03995 5.12298 5.15317 5.26536 5.37132 5.43665 5.54625 5.67369 5.71297 6.30245 6.53014 7.08067 7.35875 8.14321 8.34802 9.31477 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.020557 B = 0.001863 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.728963 B =15027.969910 C =15979.342822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 H 0.046 0.954 4 N -0.738 5.738 5 C -0.228 4.228 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.296 1.296 12 H -0.299 1.299 13 C -0.093 4.093 14 H 0.076 0.924 15 C -0.114 4.114 16 C 0.095 3.905 17 N -0.617 5.617 18 C 0.521 3.479 19 O -0.595 6.595 20 C -0.121 4.121 21 C 0.082 3.918 22 O -0.386 6.386 23 C 0.017 3.983 24 C 0.463 3.537 25 F -0.185 7.185 26 F -0.177 7.177 27 F -0.185 7.185 28 C 0.125 3.875 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.080 0.920 32 H 0.369 0.631 33 H 0.248 0.752 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 1.782 -27.883 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.069 3.931 3 H 0.064 0.936 4 N -0.378 5.378 5 C -0.360 4.360 6 H 0.095 0.905 7 C -0.273 4.273 8 N -0.623 5.623 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.223 1.223 12 H -0.226 1.226 13 C -0.113 4.113 14 H 0.095 0.905 15 C -0.152 4.152 16 C -0.026 4.026 17 N -0.350 5.350 18 C 0.312 3.688 19 O -0.476 6.476 20 C -0.161 4.161 21 C 0.006 3.994 22 O -0.306 6.306 23 C -0.061 4.061 24 C 0.409 3.591 25 F -0.167 7.167 26 F -0.158 7.158 27 F -0.167 7.167 28 C 0.002 3.998 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.201 0.799 33 H 0.057 0.943 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.055 0.945 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.988 1.788 -27.593 28.097 hybrid contribution 0.642 -0.387 1.547 1.719 sum 5.630 1.401 -26.046 26.685 Atomic orbital electron populations 1.22271 0.96995 1.01049 1.00957 1.20451 0.93175 0.94778 0.84682 0.93552 1.42672 1.78421 1.10254 1.06443 1.19637 1.34042 0.94112 0.88250 0.90497 1.25524 1.03501 0.96859 1.01442 1.69830 1.53071 1.10274 1.29132 0.85149 0.76520 0.78372 0.80236 1.18789 1.22314 1.22640 1.22498 0.92396 1.00457 0.95985 0.90517 1.22719 0.99634 1.00551 0.92293 1.22419 0.85844 1.00182 0.94127 1.48691 1.17791 1.60514 1.08020 1.20740 0.80063 0.76376 0.91655 1.90733 1.44789 1.50438 1.61688 1.21378 0.98812 1.06113 0.89757 1.22187 0.97007 1.01302 0.78943 1.87763 1.34996 1.83393 1.24413 1.23688 0.90013 1.04329 0.88103 1.20366 0.73424 0.73448 0.91911 1.93200 1.95857 1.37549 1.90049 1.93212 1.43948 1.85571 1.93085 1.93202 1.59243 1.75741 1.88504 1.21935 0.96256 1.00022 0.81586 0.93852 0.94938 0.90124 0.79922 0.94343 0.87028 0.89550 0.88510 0.88701 0.85565 0.85699 0.91882 0.91992 0.86476 0.86528 0.94457 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 9.29 71.98 0.67 -4.07 16 2 C 0.18 6.31 2.42 44.99 0.11 6.42 16 3 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 4 N -0.74 -36.08 4.76 -322.94 -1.54 -37.61 16 5 C -0.23 -12.49 9.93 84.03 0.83 -11.66 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 7 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 8 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 9 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 13 C -0.09 -2.65 2.62 -9.40 -0.02 -2.68 16 14 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 15 C -0.11 -1.94 5.78 31.79 0.18 -1.75 16 16 C 0.10 1.44 6.49 86.73 0.56 2.01 16 17 N -0.62 -15.80 3.33 -811.77 -2.70 -18.50 16 18 C 0.52 13.99 7.85 87.66 0.69 14.68 16 19 O -0.60 -22.20 16.24 -3.04 -0.05 -22.25 16 20 C -0.12 -1.94 5.26 29.85 0.16 -1.79 16 21 C 0.08 1.37 5.23 71.98 0.38 1.75 16 22 O -0.39 -5.97 10.23 -148.98 -1.52 -7.50 16 23 C 0.02 0.18 5.90 71.98 0.42 0.61 16 24 C 0.46 6.49 3.32 71.98 0.24 6.73 16 25 F -0.19 -3.12 17.26 44.97 0.78 -2.34 16 26 F -0.18 -2.46 17.32 44.97 0.78 -1.68 16 27 F -0.19 -3.15 17.26 44.97 0.78 -2.38 16 28 C 0.13 4.25 6.03 86.85 0.52 4.77 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.81 7.75 -2.39 -0.02 1.79 16 32 H 0.37 19.93 7.80 -92.70 -0.72 19.21 16 33 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.39 7.98 -2.39 -0.02 1.37 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.13 1.47 8.14 -2.39 -0.02 1.46 16 39 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 45 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 Total: -1.00 -75.48 387.29 4.32 -71.17 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.28 Total: 21.87 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.21 Total: 10.77 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.95 Total: -116.47 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.57 Total: -29.75 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 2.33 Total: -6.40 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -75.48 4.32 -71.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716967835.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.082 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds