Wall clock time and date at job start Tue Mar 31 2020 20:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46871 * 2 1 4 4 N 1.46499 * 109.47183 * 239.99979 * 2 1 3 5 5 C 1.36930 * 119.99921 * 84.99970 * 4 2 1 6 6 H 1.08002 * 120.00077 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99954 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99767 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99942 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47191 * 89.99732 * 9 7 5 11 11 H 1.48501 * 109.46978 * 209.99623 * 9 7 5 12 12 H 1.48501 * 109.46999 * 329.99652 * 9 7 5 13 13 C 1.53002 * 109.46926 * 119.99840 * 2 1 3 14 14 H 1.09000 * 110.88501 * 63.88613 * 13 2 1 15 15 C 1.55157 * 111.00204 * 187.80250 * 13 2 1 16 16 C 1.54343 * 103.01877 * 153.38356 * 15 13 2 17 17 N 1.47027 * 107.26182 * 338.14305 * 16 15 13 18 18 C 1.34777 * 125.64300 * 178.85335 * 17 16 15 19 19 O 1.21278 * 119.99854 * 179.69318 * 18 17 16 20 20 C 1.50703 * 120.00161 * 359.68625 * 18 17 16 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 O 1.42903 * 109.46726 * 180.02562 * 21 20 18 23 23 C 1.42907 * 113.99838 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.47085 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.47130 * 60.00113 * 24 23 22 26 26 F 1.39900 * 109.46920 * 180.02562 * 24 23 22 27 27 F 1.39898 * 109.47151 * 300.00170 * 24 23 22 28 28 C 1.47421 * 108.70522 * 358.58545 * 17 16 15 29 29 H 1.08996 * 109.46871 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47203 * 299.99801 * 1 2 3 31 31 H 1.08996 * 109.47073 * 60.00133 * 1 2 3 32 32 H 0.97000 * 120.00090 * 265.00165 * 4 2 1 33 33 H 0.97001 * 119.99346 * 179.97438 * 8 7 5 34 34 H 1.09003 * 110.72197 * 271.93939 * 15 13 2 35 35 H 1.08995 * 110.72055 * 35.04029 * 15 13 2 36 36 H 1.09000 * 109.98935 * 218.66835 * 16 15 13 37 37 H 1.09000 * 109.77621 * 97.49398 * 16 15 13 38 38 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 39 39 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 40 40 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 41 41 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 42 42 H 1.09004 * 109.46885 * 300.00332 * 23 22 21 43 43 H 1.08996 * 109.46933 * 60.00042 * 23 22 21 44 44 H 1.08995 * 110.36496 * 143.19958 * 28 17 16 45 45 H 1.09005 * 110.36628 * 265.40839 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6124 -0.6618 -3.5090 8 7 2.7376 -0.0052 -4.6429 9 14 3.0567 -2.4742 -3.4251 10 1 1.8596 -3.2926 -3.7450 11 1 4.1325 -2.7661 -4.4063 12 1 3.5312 -2.8047 -2.0573 13 6 2.0400 -0.7212 1.2493 14 1 1.7469 -1.7710 1.2388 15 6 3.5784 -0.5739 1.3874 16 6 3.8051 -0.7059 2.9084 17 7 2.5331 -0.3788 3.5691 18 6 2.3105 -0.3989 4.8983 19 8 1.2181 -0.1038 5.3347 20 6 3.4190 -0.7883 5.8421 21 6 2.9062 -0.7304 7.2824 22 8 3.9575 -1.0990 8.1774 23 6 3.5817 -1.0769 9.5560 24 6 4.7779 -1.4869 10.4174 25 9 5.8325 -0.5920 10.2071 26 9 4.4098 -1.4658 11.7669 27 9 5.1850 -2.7783 10.0656 28 6 1.5433 -0.0189 2.5376 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 -1.1526 33 1 3.0617 -0.4624 -5.4347 34 1 4.0920 -1.3698 0.8481 35 1 3.9055 0.4036 1.0331 36 1 4.5801 -0.0108 3.2313 37 1 4.0965 -1.7280 3.1505 38 1 4.2547 -0.0982 5.7255 39 1 3.7502 -1.8017 5.6151 40 1 2.5747 0.2828 7.5096 41 1 2.0708 -1.4206 7.3988 42 1 3.2640 -0.0708 9.8299 43 1 2.7604 -1.7745 9.7199 44 1 0.5558 -0.3880 2.8142 45 1 1.5179 1.0617 2.3968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716967836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:51 Heat of formation + Delta-G solvation = -247.182997 kcal Electronic energy + Delta-G solvation = -29020.092092 eV Core-core repulsion = 24236.032818 eV Total energy + Delta-G solvation = -4784.059274 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.11666 -48.67090 -48.60389 -41.25084 -39.50578 -38.85152 -36.89757 -34.32586 -33.30061 -32.08139 -31.10570 -30.31685 -28.81243 -26.32526 -25.11450 -24.27764 -23.54602 -22.70546 -21.30721 -20.19136 -19.68316 -19.64970 -19.53105 -18.74860 -18.31324 -17.64660 -17.25422 -17.03097 -16.56653 -16.14779 -15.82282 -15.50815 -15.48198 -15.13180 -15.07340 -15.04269 -14.85953 -14.78140 -14.76772 -14.68175 -14.33913 -14.07495 -13.93021 -13.76189 -13.45818 -13.36886 -12.96605 -12.83108 -12.75799 -12.53321 -12.41409 -12.37523 -11.91773 -11.90511 -11.70194 -11.68595 -11.38352 -11.02950 -10.93646 -10.92802 -9.68542 -9.28006 -7.97453 -5.30199 1.36550 1.40565 1.44699 1.51962 1.54747 1.87223 2.38032 2.52734 2.83358 2.99591 3.28715 3.35027 3.43908 3.62699 3.66622 3.81646 3.97792 4.01674 4.10880 4.11566 4.16443 4.33677 4.37114 4.45466 4.50732 4.58195 4.68312 4.71714 4.77478 4.80721 4.90116 4.96812 5.04882 5.15802 5.19377 5.32007 5.38170 5.58359 5.74116 5.82755 6.26246 6.48333 7.05112 7.13335 7.89326 8.08863 9.24177 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.025676 B = 0.001767 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.232100 B =15840.837312 C =16453.710854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.046 0.954 4 N -0.746 5.746 5 C -0.221 4.221 6 H 0.055 0.945 7 C -0.068 4.068 8 N -0.987 5.987 9 Si 0.954 3.046 10 H -0.285 1.285 11 H -0.301 1.301 12 H -0.243 1.243 13 C -0.097 4.097 14 H 0.086 0.914 15 C -0.121 4.121 16 C 0.102 3.898 17 N -0.616 5.616 18 C 0.531 3.469 19 O -0.585 6.585 20 C -0.129 4.129 21 C 0.083 3.917 22 O -0.390 6.390 23 C 0.019 3.981 24 C 0.460 3.540 25 F -0.186 7.186 26 F -0.177 7.177 27 F -0.187 7.187 28 C 0.119 3.881 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.365 0.635 33 H 0.255 0.745 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.074 0.926 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 -4.368 32.694 33.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.077 3.923 3 H 0.064 0.936 4 N -0.389 5.389 5 C -0.352 4.352 6 H 0.073 0.927 7 C -0.259 4.259 8 N -0.638 5.638 9 Si 0.782 3.218 10 H -0.212 1.212 11 H -0.228 1.228 12 H -0.167 1.167 13 C -0.117 4.117 14 H 0.104 0.896 15 C -0.159 4.159 16 C -0.020 4.020 17 N -0.349 5.349 18 C 0.321 3.679 19 O -0.466 6.466 20 C -0.168 4.168 21 C 0.007 3.993 22 O -0.310 6.310 23 C -0.059 4.059 24 C 0.406 3.594 25 F -0.168 7.168 26 F -0.158 7.158 27 F -0.168 7.168 28 C -0.004 4.004 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.199 0.801 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.092 0.908 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.343 -4.092 32.834 33.256 hybrid contribution 0.121 -0.761 -0.712 1.050 sum 3.465 -4.853 32.121 32.670 Atomic orbital electron populations 1.22355 0.97813 1.01331 1.00648 1.20278 0.92507 0.95032 0.84464 0.93559 1.42687 1.79881 1.09574 1.06755 1.18977 1.34600 0.94331 0.87284 0.92739 1.25491 1.02679 1.02503 0.95198 1.69895 1.54974 1.37733 1.01199 0.85425 0.77356 0.80699 0.78367 1.21192 1.22814 1.16683 1.22496 0.96212 1.00214 0.92795 0.89560 1.22606 0.95159 1.03494 0.94656 1.22281 0.85216 1.02594 0.91906 1.48596 1.14230 1.66960 1.05108 1.20459 0.89236 0.76644 0.81532 1.90705 1.27542 1.51441 1.76902 1.21416 0.97386 1.06451 0.91595 1.22210 0.88582 1.00988 0.87562 1.87782 1.38352 1.90536 1.14319 1.23681 0.93209 1.06652 0.82376 1.20453 0.84937 0.74770 0.79231 1.93203 1.60802 1.68140 1.94659 1.93214 1.91468 1.96283 1.34879 1.93201 1.91918 1.39933 1.91763 1.22141 0.92676 0.99584 0.85983 0.93023 0.91301 0.94952 0.80118 0.93591 0.89846 0.91058 0.89061 0.89045 0.86147 0.86156 0.91554 0.91548 0.86314 0.86335 0.90799 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.15 9.27 71.98 0.67 -4.49 16 2 C 0.19 6.23 2.43 44.99 0.11 6.34 16 3 H 0.05 1.67 8.02 -2.39 -0.02 1.65 16 4 N -0.75 -31.75 4.78 -322.93 -1.54 -33.29 16 5 C -0.22 -11.97 10.41 84.04 0.87 -11.10 16 6 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 8 N -0.99 -62.23 13.97 21.65 0.30 -61.93 16 9 Si 0.95 43.72 27.74 68.60 1.90 45.62 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 12 H -0.24 -9.61 6.52 99.48 0.65 -8.96 16 13 C -0.10 -2.45 2.66 -9.40 -0.02 -2.47 16 14 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 15 C -0.12 -2.68 6.28 31.79 0.20 -2.48 16 16 C 0.10 1.59 6.49 86.73 0.56 2.16 16 17 N -0.62 -12.31 3.33 -811.76 -2.70 -15.01 16 18 C 0.53 10.83 7.85 87.66 0.69 11.52 16 19 O -0.58 -16.25 16.24 -3.02 -0.05 -16.30 16 20 C -0.13 -1.65 5.26 29.85 0.16 -1.49 16 21 C 0.08 1.06 5.23 71.98 0.38 1.43 16 22 O -0.39 -5.11 10.23 -148.98 -1.52 -6.63 16 23 C 0.02 0.16 5.90 71.98 0.42 0.58 16 24 C 0.46 5.75 3.32 71.98 0.24 5.99 16 25 F -0.19 -2.96 17.26 44.97 0.78 -2.18 16 26 F -0.18 -2.18 17.32 44.97 0.78 -1.40 16 27 F -0.19 -2.96 17.26 44.97 0.78 -2.18 16 28 C 0.12 2.76 5.27 86.85 0.46 3.22 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.80 7.23 -2.39 -0.02 1.79 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.37 14.84 5.66 -92.71 -0.52 14.31 16 33 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.75 7.99 -2.39 -0.02 1.74 16 36 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.19 8.14 -2.39 -0.02 1.18 16 40 H 0.07 0.85 8.10 -2.39 -0.02 0.84 16 41 H 0.07 0.85 8.10 -2.39 -0.02 0.84 16 42 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 45 H 0.07 1.65 8.04 -2.38 -0.02 1.63 16 Total: -1.00 -71.86 383.55 4.34 -67.52 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.42 Total: 19.95 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.20 Total: 5.82 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -3.94 Total: -110.22 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -1.57 Total: -22.93 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 2.33 Total: -5.76 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.90 Total: 45.62 kcal Total: -71.86 4.34 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716967836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.661 kcal (2) G-P(sol) polarization free energy of solvation -71.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds