Wall clock time and date at job start Tue Mar 31 2020 20:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47031 * 2 1 4 4 N 1.46498 * 109.47255 * 240.00212 * 2 1 3 5 5 C 1.36938 * 120.00144 * 84.99746 * 4 2 1 6 6 H 1.08005 * 119.99926 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00459 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00454 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99605 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47167 * 90.00500 * 9 7 5 11 11 H 1.48506 * 109.47364 * 209.99967 * 9 7 5 12 12 H 1.48502 * 109.47430 * 329.99992 * 9 7 5 13 13 C 1.52998 * 109.47109 * 120.00125 * 2 1 3 14 14 H 1.09007 * 110.88285 * 59.91752 * 13 2 1 15 15 C 1.55155 * 111.00487 * 296.03756 * 13 2 1 16 16 C 1.54319 * 102.94270 * 206.38556 * 15 13 2 17 17 N 1.47015 * 107.27349 * 22.19055 * 16 15 13 18 18 C 1.34782 * 125.65194 * 181.02047 * 17 16 15 19 19 O 1.21280 * 119.99662 * 180.30205 * 18 17 16 20 20 C 1.50697 * 119.99623 * 0.02850 * 18 17 16 21 21 C 1.53008 * 109.46894 * 179.97438 * 20 18 17 22 22 O 1.42895 * 109.47076 * 179.97438 * 21 20 18 23 23 C 1.42900 * 113.99805 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.46838 * 180.02562 * 23 22 21 25 25 F 1.39900 * 109.47741 * 60.00087 * 24 23 22 26 26 F 1.39902 * 109.47288 * 180.02562 * 24 23 22 27 27 F 1.39905 * 109.47403 * 299.99912 * 24 23 22 28 28 C 1.47424 * 108.70137 * 1.28923 * 17 16 15 29 29 H 1.08999 * 109.46874 * 65.07765 * 1 2 3 30 30 H 1.09006 * 109.46753 * 185.07450 * 1 2 3 31 31 H 1.08995 * 109.47040 * 305.07711 * 1 2 3 32 32 H 0.96998 * 120.00283 * 265.00506 * 4 2 1 33 33 H 0.96995 * 120.00349 * 180.02562 * 8 7 5 34 34 H 1.09007 * 110.71868 * 88.02240 * 15 13 2 35 35 H 1.09002 * 110.72078 * 324.74935 * 15 13 2 36 36 H 1.09004 * 109.88071 * 262.77369 * 16 15 13 37 37 H 1.09000 * 109.88230 * 141.61131 * 16 15 13 38 38 H 1.08994 * 109.47235 * 299.99406 * 20 18 17 39 39 H 1.09008 * 109.47173 * 60.00165 * 20 18 17 40 40 H 1.08998 * 109.46794 * 300.00407 * 21 20 18 41 41 H 1.09000 * 109.46869 * 60.00046 * 21 20 18 42 42 H 1.08998 * 109.47337 * 300.00069 * 23 22 21 43 43 H 1.08999 * 109.47406 * 60.00498 * 23 22 21 44 44 H 1.09003 * 110.36953 * 94.47868 * 28 17 16 45 45 H 1.09009 * 110.36752 * 216.80311 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4241 7 6 2.6124 -0.6615 -3.5091 8 7 2.7385 -0.0048 -4.6427 9 14 3.0567 -2.4740 -3.4252 10 1 1.8596 -3.2925 -3.7453 11 1 4.1326 -2.7658 -4.4063 12 1 3.5312 -2.8046 -2.0574 13 6 2.0400 -0.7213 1.2492 14 1 1.6882 -1.7527 1.2732 15 6 1.6259 0.0376 2.5376 16 6 2.7190 -0.3725 3.5467 17 7 3.8899 -0.8054 2.7701 18 6 5.0498 -1.2595 3.2848 19 8 5.9547 -1.5854 2.5460 20 6 5.2245 -1.3564 4.7785 21 6 6.6203 -1.8975 5.0947 22 8 6.7862 -1.9889 6.5110 23 6 8.0635 -2.4856 6.9157 24 6 8.1283 -2.5412 8.4434 25 9 7.1248 -3.3902 8.9222 26 9 9.3790 -3.0270 8.8397 27 9 7.9408 -1.2568 8.9652 28 6 3.5874 -0.6544 1.3352 29 1 -0.3633 0.4330 -0.9320 30 1 -0.3633 -1.0237 0.0909 31 1 -0.3633 0.5906 0.8410 32 1 2.2490 -1.6317 -1.1527 33 1 3.0619 -0.4620 -5.4347 34 1 0.6437 -0.2893 2.8789 35 1 1.6389 1.1149 2.3716 36 1 2.3612 -1.1943 4.1671 37 1 2.9839 0.4794 4.1730 38 1 5.1084 -0.3680 5.2228 39 1 4.4724 -2.0302 5.1893 40 1 6.7360 -2.8860 4.6503 41 1 7.3726 -1.2242 4.6838 42 1 8.2095 -3.4865 6.5096 43 1 8.8455 -1.8244 6.5424 44 1 3.9487 0.3072 0.9704 45 1 4.0342 -1.4693 0.7655 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716967837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:55 Heat of formation + Delta-G solvation = -225.491538 kcal Electronic energy + Delta-G solvation = -29188.356798 eV Core-core repulsion = 24405.238136 eV Total energy + Delta-G solvation = -4783.118662 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.53158 -48.09310 -47.98423 -40.26463 -38.76530 -37.86968 -35.41440 -32.81884 -32.29695 -30.83790 -29.79777 -28.98252 -28.35415 -24.78752 -23.76651 -23.71122 -22.72935 -21.39996 -19.91499 -19.29627 -19.07777 -19.07160 -18.17259 -17.72822 -17.38187 -16.86292 -16.30173 -16.15775 -15.45121 -14.95836 -14.87854 -14.80451 -14.48744 -14.43880 -14.33232 -14.16519 -14.16044 -14.01341 -13.80261 -13.51449 -13.03168 -12.80870 -12.61450 -12.41651 -12.23923 -12.19621 -11.94138 -11.88542 -11.75430 -11.70656 -11.05320 -10.89656 -10.66337 -10.59929 -10.38645 -10.29992 -10.03582 -9.92331 -9.59483 -8.95851 -8.68705 -7.29731 -5.78015 -3.13947 1.92553 2.49641 2.61676 3.08228 3.35597 3.37899 3.40975 3.46223 3.51157 3.96284 4.28001 4.47819 4.48981 4.52479 4.58713 4.59106 4.59922 4.79869 4.88710 5.04020 5.16535 5.27397 5.37176 5.39139 5.42563 5.51600 5.63085 5.74268 5.78779 5.93662 6.01878 6.12618 6.18681 6.25336 6.27778 6.35141 6.44380 6.73322 6.95562 7.43489 7.97137 8.02543 8.40770 9.18876 9.91627 10.10549 11.40216 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.001971 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.229278 B =14205.944711 C =15153.892186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.189 3.811 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.080 0.920 15 C -0.124 4.124 16 C 0.099 3.901 17 N -0.617 5.617 18 C 0.530 3.470 19 O -0.542 6.542 20 C -0.134 4.134 21 C 0.079 3.921 22 O -0.377 6.377 23 C 0.020 3.980 24 C 0.462 3.538 25 F -0.176 7.176 26 F -0.177 7.177 27 F -0.176 7.176 28 C 0.117 3.883 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.360 0.640 33 H 0.259 0.741 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 -3.641 28.419 29.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.581 5.581 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.203 1.203 13 C -0.126 4.126 14 H 0.099 0.901 15 C -0.162 4.162 16 C -0.024 4.024 17 N -0.351 5.351 18 C 0.318 3.682 19 O -0.419 6.419 20 C -0.174 4.174 21 C 0.003 3.997 22 O -0.296 6.296 23 C -0.058 4.058 24 C 0.407 3.593 25 F -0.157 7.157 26 F -0.159 7.159 27 F -0.157 7.157 28 C -0.005 4.005 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.094 0.906 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.291 -3.604 28.023 28.946 hybrid contribution 0.441 -1.403 -0.003 1.470 sum 6.732 -5.006 28.020 29.249 Atomic orbital electron populations 1.22412 0.98516 1.00571 1.00965 1.20132 0.92134 0.95453 0.84318 0.92411 1.42791 1.79749 1.09490 1.07133 1.19029 1.37089 0.95568 0.85518 0.89188 1.24659 1.01348 0.97433 0.95596 1.69692 1.52581 1.35561 1.00268 0.86582 0.78075 0.86901 0.77147 1.21184 1.21781 1.20272 1.22767 0.93915 1.00475 0.95468 0.90129 1.22673 0.97722 1.01430 0.94370 1.22114 0.86077 0.99370 0.94884 1.48575 1.13762 1.63865 1.08897 1.19891 0.81227 0.77233 0.89875 1.90753 1.39983 1.49519 1.61695 1.21427 0.98024 1.04706 0.93281 1.22293 0.97027 1.01845 0.78558 1.87811 1.31168 1.86217 1.24410 1.23492 0.89742 1.03629 0.88986 1.20190 0.73639 0.74076 0.91346 1.93222 1.61138 1.71148 1.90222 1.93216 1.42264 1.88172 1.92203 1.93223 1.94862 1.38815 1.88826 1.22356 0.95413 1.03038 0.79649 0.92084 0.93729 0.94034 0.80693 0.93065 0.89849 0.90063 0.91390 0.91309 0.87818 0.87881 0.91419 0.91374 0.88360 0.88328 0.90570 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.23 37.16 0.34 -2.23 16 2 C 0.19 3.26 2.40 -67.93 -0.16 3.09 16 3 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 4 N -0.75 -16.72 4.68 -53.43 -0.25 -16.97 16 5 C -0.24 -6.60 10.41 -15.06 -0.16 -6.75 16 6 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 8 N -0.93 -29.07 13.97 55.49 0.78 -28.30 16 9 Si 0.88 22.12 27.74 -169.99 -4.71 17.40 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 13 C -0.11 -1.45 2.65 -88.36 -0.23 -1.69 16 14 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 15 C -0.12 -1.19 5.56 -24.90 -0.14 -1.33 16 16 C 0.10 0.87 6.48 -3.07 -0.02 0.85 16 17 N -0.62 -7.71 3.32 -170.39 -0.57 -8.28 16 18 C 0.53 6.84 7.85 -10.98 -0.09 6.76 16 19 O -0.54 -9.24 16.24 5.56 0.09 -9.15 16 20 C -0.13 -1.16 5.26 -27.88 -0.15 -1.31 16 21 C 0.08 0.68 5.23 37.16 0.19 0.87 16 22 O -0.38 -3.15 10.23 -35.23 -0.36 -3.51 16 23 C 0.02 0.12 5.90 37.16 0.22 0.34 16 24 C 0.46 3.42 3.32 37.16 0.12 3.54 16 25 F -0.18 -1.55 17.26 2.25 0.04 -1.51 16 26 F -0.18 -1.29 17.32 2.25 0.04 -1.25 16 27 F -0.18 -1.55 17.26 2.25 0.04 -1.51 16 28 C 0.12 1.79 6.15 -2.41 -0.01 1.78 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.52 7.60 -51.93 -0.39 0.12 16 32 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 41 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 42 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 45 H 0.08 1.45 8.04 -51.92 -0.42 1.03 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -33.62 384.13 -6.25 -39.87 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.96 Total: 3.42 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.18 Total: 3.99 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.04 Total: -53.54 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.27 Total: -12.65 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.12 Total: -4.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.71 Total: 17.40 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.62 -6.25 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716967837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.620 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds