Wall clock time and date at job start Tue Mar 31 2020 21:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46924 * 2 1 4 4 C 1.52995 * 109.47552 * 239.99758 * 2 1 3 5 5 N 1.46498 * 109.47706 * 184.99978 * 4 2 1 6 6 C 1.46502 * 119.99952 * 89.99535 * 5 4 2 7 7 C 1.36934 * 120.00035 * 270.00783 * 5 4 2 8 8 H 1.07995 * 120.00348 * 22.06235 * 7 5 4 9 9 C 1.38813 * 120.00028 * 202.07342 * 7 5 4 10 10 N 1.31620 * 119.99598 * 13.93855 * 9 7 5 11 11 Si 1.86790 * 120.00284 * 193.93840 * 9 7 5 12 12 H 1.48504 * 109.47474 * 89.99892 * 11 9 7 13 13 H 1.48501 * 109.47593 * 209.99900 * 11 9 7 14 14 H 1.48504 * 109.47204 * 329.99973 * 11 9 7 15 15 N 1.46505 * 109.47111 * 119.99678 * 2 1 3 16 16 C 1.34776 * 119.99958 * 275.00113 * 15 2 1 17 17 O 1.21282 * 120.00413 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99781 * 179.97438 * 16 15 2 19 19 H 1.09001 * 115.56233 * 34.31250 * 18 16 15 20 20 C 1.53006 * 117.50001 * 248.62406 * 18 16 15 21 21 C 1.53002 * 59.99947 * 252.51126 * 20 18 16 22 22 H 1.09006 * 117.49692 * 107.50973 * 21 20 18 23 23 C 1.50694 * 117.49966 * 252.51025 * 21 20 18 24 24 C 1.38257 * 119.99987 * 8.86456 * 23 21 20 25 25 C 1.38218 * 120.07000 * 180.25920 * 24 23 21 26 26 C 1.38252 * 120.06773 * 359.48396 * 25 24 23 27 27 C 1.38364 * 120.00491 * 0.25526 * 26 25 24 28 28 F 1.35098 * 120.03941 * 180.02562 * 27 26 25 29 29 C 1.38375 * 120.00225 * 188.60653 * 23 21 20 30 30 F 1.35104 * 120.03141 * 359.97438 * 29 23 21 31 31 H 1.09004 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47073 * 299.99861 * 1 2 3 33 33 H 1.08995 * 109.46659 * 60.00281 * 1 2 3 34 34 H 1.09003 * 109.47393 * 305.00525 * 4 2 1 35 35 H 1.08999 * 109.46908 * 64.99654 * 4 2 1 36 36 H 1.09001 * 109.46464 * 95.30909 * 6 5 4 37 37 H 1.08994 * 109.47206 * 215.30900 * 6 5 4 38 38 H 1.08996 * 109.47085 * 335.31505 * 6 5 4 39 39 H 0.97000 * 119.99861 * 179.97438 * 10 9 7 40 40 H 0.96999 * 119.99858 * 94.99634 * 15 2 1 41 41 H 1.08995 * 117.49701 * 145.02033 * 20 18 16 42 42 H 1.09001 * 117.51182 * 359.97438 * 20 18 16 43 43 H 1.07996 * 119.96721 * 359.97438 * 24 23 21 44 44 H 1.07994 * 119.96596 * 179.76909 * 25 24 23 45 45 H 1.08006 * 119.99792 * 180.23990 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5002 -0.8264 -1.1905 6 6 4.1259 -1.9919 -0.5610 7 6 4.2800 0.1648 -1.7238 8 1 3.8746 1.1565 -1.8599 9 6 5.5915 -0.1050 -2.0898 10 7 6.0047 -1.3510 -2.1861 11 14 6.7699 1.2999 -2.4456 12 1 7.4627 1.6944 -1.1927 13 1 7.7732 0.8625 -3.4493 14 1 6.0107 2.4600 -2.9778 15 7 2.0184 -0.6906 1.1963 16 6 2.1471 -0.0181 2.3572 17 8 1.8582 1.1585 2.4118 18 6 2.6489 -0.7287 3.5878 19 1 3.3927 -1.5057 3.4118 20 6 1.6564 -0.9469 4.7317 21 6 2.7728 0.0895 4.8748 22 1 2.4913 1.1417 4.8317 23 6 3.9140 -0.2406 5.8019 24 6 4.0216 -1.5090 6.3415 25 6 5.0647 -1.8118 7.1963 26 6 6.0086 -0.8500 7.5051 27 6 5.9068 0.4188 6.9626 28 9 6.8291 1.3590 7.2635 29 6 4.8571 0.7242 6.1091 30 9 4.7558 1.9622 5.5778 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8900 34 1 1.6055 -1.7198 -1.2951 35 1 1.7517 -0.1584 -2.1369 36 1 4.3682 -2.7309 -1.3248 37 1 5.0386 -1.6833 -0.0514 38 1 3.4364 -2.4287 0.1613 39 1 6.9211 -1.5396 -2.4422 40 1 2.2490 -1.6317 1.1527 41 1 1.7474 -1.8675 5.3081 42 1 0.6405 -0.5763 4.5945 43 1 3.2873 -2.2627 6.0984 44 1 5.1451 -2.8020 7.6197 45 1 6.8254 -1.0890 8.1702 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722914649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:45 Heat of formation + Delta-G solvation = -70.706347 kcal Electronic energy + Delta-G solvation = -29343.284090 eV Core-core repulsion = 24997.646643 eV Total energy + Delta-G solvation = -4345.637447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.55521 -49.65007 -41.29970 -40.09864 -38.34406 -37.20007 -35.76500 -33.15715 -32.08908 -31.53672 -31.23241 -28.02909 -27.44951 -25.97414 -25.12901 -23.74791 -23.39937 -22.03952 -21.61878 -21.01068 -19.12919 -18.82133 -18.66429 -18.01310 -17.70859 -17.41090 -17.03792 -16.93266 -16.28496 -16.08627 -15.84683 -15.65337 -15.46151 -15.43268 -15.17476 -15.08375 -14.52181 -14.10362 -13.71668 -13.64707 -13.49092 -13.40682 -13.30796 -13.21794 -12.85381 -12.78073 -12.66214 -12.50563 -12.32450 -12.22253 -12.03916 -11.88197 -11.80755 -11.75459 -11.59643 -10.85352 -10.67717 -9.96850 -9.78972 -9.75880 -8.76655 -7.86123 -5.32384 -0.10158 -0.08332 1.38463 1.42116 1.48572 1.55458 2.21431 2.36118 2.46377 2.70999 2.94350 3.26081 3.26331 3.43190 3.56818 3.66939 3.75088 3.80454 3.91027 4.04055 4.13457 4.19870 4.24719 4.37317 4.49901 4.68573 4.75282 4.76076 4.79538 4.81760 4.92480 4.94086 4.98487 4.99878 5.03899 5.17408 5.22711 5.28486 5.30699 5.41421 5.60062 5.68886 5.74685 5.75988 6.30200 6.67357 7.14159 7.35734 7.86656 8.25798 9.15210 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.003483 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.924798 B = 8037.173328 C = 9599.142015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.124 3.876 3 H 0.038 0.962 4 C 0.143 3.857 5 N -0.613 5.613 6 C 0.181 3.819 7 C -0.259 4.259 8 H 0.058 0.942 9 C -0.044 4.044 10 N -0.931 5.931 11 Si 0.953 3.047 12 H -0.296 1.296 13 H -0.288 1.288 14 H -0.273 1.273 15 N -0.692 5.692 16 C 0.532 3.468 17 O -0.596 6.596 18 C -0.181 4.181 19 H 0.144 0.856 20 C -0.096 4.096 21 C -0.110 4.110 22 H 0.094 0.906 23 C -0.064 4.064 24 C -0.092 4.092 25 C -0.078 4.078 26 C -0.125 4.125 27 C 0.043 3.957 28 F -0.146 7.146 29 C 0.032 3.968 30 F -0.152 7.152 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.041 0.959 39 H 0.248 0.752 40 H 0.407 0.593 41 H 0.156 0.844 42 H 0.107 0.893 43 H 0.180 0.820 44 H 0.188 0.812 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.613 -8.989 21.252 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.057 0.943 4 C 0.017 3.983 5 N -0.336 5.336 6 C 0.037 3.963 7 C -0.390 4.390 8 H 0.076 0.924 9 C -0.239 4.239 10 N -0.578 5.578 11 Si 0.782 3.218 12 H -0.224 1.224 13 H -0.214 1.214 14 H -0.198 1.198 15 N -0.343 5.343 16 C 0.320 3.680 17 O -0.478 6.478 18 C -0.201 4.201 19 H 0.162 0.838 20 C -0.132 4.132 21 C -0.128 4.128 22 H 0.112 0.888 23 C -0.065 4.065 24 C -0.110 4.110 25 C -0.096 4.096 26 C -0.143 4.143 27 C 0.023 3.977 28 F -0.125 7.125 29 C 0.012 3.988 30 F -0.131 7.131 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.026 0.974 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.245 0.755 41 H 0.173 0.827 42 H 0.125 0.875 43 H 0.197 0.803 44 H 0.205 0.795 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -8.632 -8.154 21.167 24.270 hybrid contribution 1.618 1.791 -0.813 2.547 sum -7.013 -6.363 20.354 22.449 Atomic orbital electron populations 1.21990 0.93352 1.03048 1.01936 1.21652 0.94445 0.96310 0.85991 0.94317 1.21222 0.83199 0.99284 0.94631 1.44022 1.00962 1.22259 1.66352 1.20578 0.93972 0.88147 0.93646 1.19383 0.94581 0.90496 1.34526 0.92395 1.25525 0.99941 0.97825 1.00649 1.70177 1.16562 1.17807 1.53218 0.85484 0.79410 0.79902 0.77000 1.22401 1.21376 1.19768 1.45886 1.65585 1.14185 1.08649 1.20157 0.76602 0.86284 0.85005 1.90648 1.53163 1.17981 1.85959 1.22405 1.06447 1.03685 0.87613 0.83788 1.23353 0.94001 1.00351 0.95514 1.20768 0.97859 0.98637 0.95577 0.88807 1.19193 0.94319 0.94149 0.98833 1.21515 0.99664 0.94182 0.95593 1.21612 0.91600 1.00733 0.95644 1.21530 1.02416 0.89439 1.00913 1.18107 0.88849 0.89392 1.01391 1.91481 1.64323 1.64700 1.91957 1.18088 0.98758 0.81744 1.00243 1.91471 1.96016 1.40496 1.85132 0.90307 0.93789 0.90833 0.90982 0.92292 0.97486 0.97447 0.94040 0.94251 0.75523 0.82657 0.87450 0.80282 0.79461 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.48 71.98 0.68 -3.16 16 2 C 0.12 4.30 2.88 44.99 0.13 4.43 16 3 H 0.04 1.70 7.58 -2.39 -0.02 1.68 16 4 C 0.14 5.35 5.29 86.38 0.46 5.81 16 5 N -0.61 -29.48 2.78 -726.96 -2.02 -31.51 16 6 C 0.18 8.26 8.52 127.77 1.09 9.35 16 7 C -0.26 -14.49 9.66 84.03 0.81 -13.68 16 8 H 0.06 3.28 7.87 -2.91 -0.02 3.26 16 9 C -0.04 -2.50 5.08 84.86 0.43 -2.07 16 10 N -0.93 -54.71 10.71 21.65 0.23 -54.48 16 11 Si 0.95 47.13 29.58 68.60 2.03 49.16 16 12 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 13 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 14 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 15 N -0.69 -22.02 4.52 -442.52 -2.00 -24.02 16 16 C 0.53 18.08 7.58 87.66 0.66 18.75 16 17 O -0.60 -25.74 15.92 -3.04 -0.05 -25.79 16 18 C -0.18 -4.34 5.82 -11.54 -0.07 -4.41 16 19 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 20 C -0.10 -1.46 9.56 30.60 0.29 -1.17 16 21 C -0.11 -2.68 5.31 -11.54 -0.06 -2.74 16 22 H 0.09 3.00 7.39 -2.38 -0.02 2.99 16 23 C -0.06 -1.39 5.62 -19.83 -0.11 -1.51 16 24 C -0.09 -1.10 9.29 22.27 0.21 -0.90 16 25 C -0.08 -0.72 10.04 22.27 0.22 -0.49 16 26 C -0.12 -1.79 10.02 22.30 0.22 -1.56 16 27 C 0.04 1.02 7.31 22.41 0.16 1.19 16 28 F -0.15 -4.05 17.18 44.97 0.77 -3.28 16 29 C 0.03 0.89 7.25 22.41 0.16 1.05 16 30 F -0.15 -5.43 16.53 44.97 0.74 -4.68 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 35 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 36 H 0.01 0.35 7.35 -2.39 -0.02 0.33 16 37 H 0.01 0.35 7.31 -2.39 -0.02 0.33 16 38 H 0.04 1.44 5.76 -2.39 -0.01 1.43 16 39 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.41 11.06 6.21 -92.71 -0.58 10.49 16 41 H 0.16 0.92 6.18 -2.39 -0.01 0.91 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.18 0.75 6.03 -2.91 -0.02 0.74 16 44 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 45 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -80.13 380.17 5.46 -74.67 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.45 Total: 11.05 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.30 Total: 8.88 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -3.79 Total: -110.01 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.05 Total: -25.79 kcal Atomic # 9 Polarization: -9.48 SS G_CDS: 1.52 Total: -7.97 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -80.13 5.46 -74.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722914649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.966 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds