Wall clock time and date at job start Tue Mar 31 2020 21:06:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09004 * 109.47159 * 2 1
4 4 C 1.53003 * 109.46470 * 119.99643 * 2 1 3
5 5 N 1.46506 * 109.46911 * 175.00475 * 4 2 1
6 6 C 1.46493 * 120.00400 * 89.99529 * 5 4 2
7 7 C 1.36940 * 119.99662 * 270.00058 * 5 4 2
8 8 H 1.08001 * 119.99959 * 22.01104 * 7 5 4
9 9 C 1.38809 * 119.99639 * 202.01274 * 7 5 4
10 10 N 1.31618 * 120.00462 * 14.21776 * 9 7 5
11 11 Si 1.86807 * 119.99594 * 194.21563 * 9 7 5
12 12 H 1.48499 * 109.47296 * 0.02562 * 11 9 7
13 13 H 1.48509 * 109.46835 * 120.00071 * 11 9 7
14 14 H 1.48498 * 109.47038 * 239.99659 * 11 9 7
15 15 N 1.46493 * 109.47504 * 239.99280 * 2 1 3
16 16 C 1.34780 * 119.99978 * 85.00092 * 15 2 1
17 17 O 1.21285 * 119.99566 * 0.02562 * 16 15 2
18 18 C 1.50696 * 120.00138 * 179.97438 * 16 15 2
19 19 H 1.09000 * 115.55868 * 34.32046 * 18 16 15
20 20 C 1.52995 * 117.50026 * 248.62069 * 18 16 15
21 21 C 1.53000 * 60.00548 * 252.51417 * 20 18 16
22 22 H 1.08996 * 117.49947 * 107.51077 * 21 20 18
23 23 C 1.50700 * 117.49999 * 252.51617 * 21 20 18
24 24 C 1.38261 * 119.99900 * 8.85293 * 23 21 20
25 25 C 1.38216 * 120.06765 * 180.25953 * 24 23 21
26 26 C 1.38254 * 120.06834 * 359.49401 * 25 24 23
27 27 C 1.38364 * 120.00280 * 0.25078 * 26 25 24
28 28 F 1.35104 * 120.03524 * 180.02562 * 27 26 25
29 29 C 1.38363 * 119.99947 * 188.61028 * 23 21 20
30 30 F 1.35102 * 120.03762 * 359.96628 * 29 23 21
31 31 H 1.08993 * 109.47576 * 300.00779 * 1 2 3
32 32 H 1.09004 * 109.46450 * 60.00585 * 1 2 3
33 33 H 1.08995 * 109.47115 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.47277 * 294.99849 * 4 2 1
35 35 H 1.09000 * 109.47375 * 55.00393 * 4 2 1
36 36 H 1.09005 * 109.46930 * 95.13990 * 6 5 4
37 37 H 1.08997 * 109.47890 * 215.14522 * 6 5 4
38 38 H 1.08998 * 109.47237 * 335.14726 * 6 5 4
39 39 H 0.96998 * 120.00014 * 179.97438 * 10 9 7
40 40 H 0.96997 * 120.00226 * 265.00515 * 15 2 1
41 41 H 1.09000 * 117.49974 * 145.02066 * 20 18 16
42 42 H 1.08998 * 117.52127 * 359.97438 * 20 18 16
43 43 H 1.07999 * 119.96728 * 0.02562 * 24 23 21
44 44 H 1.07997 * 119.96207 * 179.77185 * 25 24 23
45 45 H 1.08005 * 119.99861 * 180.23902 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2494
5 7 3.5000 -0.8263 1.1908
6 6 4.3342 0.2341 1.7614
7 6 4.0849 -1.9158 0.6026
8 1 3.5312 -2.5056 -0.1129
9 6 5.3896 -2.2622 0.9261
10 7 5.9682 -1.7333 1.9834
11 14 6.3242 -3.4793 -0.1393
12 1 5.4571 -3.9244 -1.2596
13 1 7.5413 -2.8265 -0.6852
14 1 6.7177 -4.6538 0.6798
15 7 2.0184 -0.6907 -1.1960
16 6 2.1472 -0.0185 -2.3571
17 8 1.8592 1.1584 -2.4115
18 6 2.6502 -0.7288 -3.5873
19 1 2.3534 -1.7734 -3.6815
20 6 4.0319 -0.3365 -4.1143
21 6 2.7742 0.0893 -4.8743
22 1 2.4922 1.1412 -4.8315
23 6 2.4767 -0.6110 -6.1752
24 6 3.2174 -1.7166 -6.5502
25 6 2.9493 -2.3567 -7.7455
26 6 1.9332 -1.8990 -8.5637
27 6 1.1868 -0.7960 -8.1888
28 9 0.1933 -0.3485 -8.9876
29 6 1.4592 -0.1504 -6.9919
30 9 0.7314 0.9265 -6.6235
31 1 -0.3634 0.5139 0.8898
32 1 -0.3632 0.5138 -0.8901
33 1 -0.3633 -1.0276 -0.0005
34 1 1.7515 -0.1582 2.1370
35 1 1.6053 -1.7198 1.2953
36 1 4.6179 -0.0347 2.7790
37 1 5.2312 0.3571 1.1546
38 1 3.7741 1.1691 1.7755
39 1 6.8797 -1.9757 2.2096
40 1 2.2491 -1.6318 -1.1524
41 1 4.6443 -1.1231 -4.5552
42 1 4.5773 0.4356 -3.5717
43 1 4.0086 -2.0783 -5.9103
44 1 3.5313 -3.2180 -8.0385
45 1 1.7222 -2.4024 -9.4957
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001722914655.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:06:50
Heat of formation + Delta-G solvation = -53.402844 kcal
Electronic energy + Delta-G solvation = -29357.382105 eV
Core-core repulsion = 25012.494994 eV
Total energy + Delta-G solvation = -4344.887111 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-49.63881 -48.70694 -40.14820 -39.05990 -36.94797 -35.86308 -34.02471 -31.50087
-30.97094 -30.56090 -30.04929 -26.23043 -25.65383 -24.93021 -24.17065 -22.94214
-21.74774 -21.00613 -20.03807 -19.73533 -18.24030 -17.70368 -17.15934 -16.93169
-16.50984 -16.34420 -15.68839 -15.41626 -15.11524 -15.07412 -14.76054 -14.62350
-14.29083 -13.85573 -13.77696 -13.27536 -13.02203 -12.96304 -12.76616 -12.63987
-12.39495 -12.14307 -11.97468 -11.87807 -11.64760 -11.40217 -11.11549 -10.93749
-10.89877 -10.83006 -10.54098 -10.42141 -10.34130 -10.03139 -9.92777 -9.43803
-9.03534 -8.94087 -8.61683 -8.44136 -6.79912 -5.78512 -3.24541 0.62256
0.64427 2.81530 3.06362 3.29995 3.34432 3.39076 3.43474 3.63286
3.96636 4.12096 4.23015 4.41597 4.41794 4.57551 4.69198 4.79575
4.89700 5.00777 5.25609 5.31600 5.43444 5.48266 5.49409 5.57472
5.62920 5.68976 5.73435 5.81556 5.90729 5.92954 5.99555 6.13200
6.16393 6.19474 6.44645 6.45074 6.46073 6.73728 6.80905 7.11855
7.34592 7.63705 7.72994 8.11538 8.31459 8.75003 9.15983 9.80114
10.30321 11.25891
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.013177 B = 0.003201 C = 0.002720
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2124.338950 B = 8744.599402 C =10291.624651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.118 3.882
3 H 0.077 0.923
4 C 0.141 3.859
5 N -0.599 5.599
6 C 0.163 3.837
7 C -0.251 4.251
8 H 0.065 0.935
9 C 0.003 3.997
10 N -0.903 5.903
11 Si 0.899 3.101
12 H -0.278 1.278
13 H -0.290 1.290
14 H -0.291 1.291
15 N -0.689 5.689
16 C 0.542 3.458
17 O -0.556 6.556
18 C -0.164 4.164
19 H 0.124 0.876
20 C -0.132 4.132
21 C -0.099 4.099
22 H 0.132 0.868
23 C -0.051 4.051
24 C -0.103 4.103
25 C -0.096 4.096
26 C -0.133 4.133
27 C 0.067 3.933
28 F -0.130 7.130
29 C 0.075 3.925
30 F -0.123 7.123
31 H 0.060 0.940
32 H 0.052 0.948
33 H 0.052 0.948
34 H 0.052 0.948
35 H 0.052 0.948
36 H 0.031 0.969
37 H 0.040 0.960
38 H -0.003 1.003
39 H 0.252 0.748
40 H 0.404 0.596
41 H 0.109 0.891
42 H 0.111 0.889
43 H 0.144 0.856
44 H 0.142 0.858
45 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.870 -1.507 -17.174 18.559
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.010 3.990
3 H 0.095 0.905
4 C 0.013 3.987
5 N -0.321 5.321
6 C 0.018 3.982
7 C -0.380 4.380
8 H 0.083 0.917
9 C -0.196 4.196
10 N -0.548 5.548
11 Si 0.729 3.271
12 H -0.203 1.203
13 H -0.216 1.216
14 H -0.218 1.218
15 N -0.339 5.339
16 C 0.327 3.673
17 O -0.436 6.436
18 C -0.185 4.185
19 H 0.142 0.858
20 C -0.169 4.169
21 C -0.118 4.118
22 H 0.150 0.850
23 C -0.052 4.052
24 C -0.121 4.121
25 C -0.114 4.114
26 C -0.152 4.152
27 C 0.047 3.953
28 F -0.109 7.109
29 C 0.055 3.945
30 F -0.101 7.101
31 H 0.079 0.921
32 H 0.071 0.929
33 H 0.071 0.929
34 H 0.070 0.930
35 H 0.070 0.930
36 H 0.049 0.951
37 H 0.058 0.942
38 H 0.016 0.984
39 H 0.062 0.938
40 H 0.240 0.760
41 H 0.127 0.873
42 H 0.129 0.871
43 H 0.162 0.838
44 H 0.159 0.841
45 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -6.962 -0.640 -17.095 18.469
hybrid contribution 0.387 -0.882 -0.591 1.130
sum -6.575 -1.522 -17.686 18.930
Atomic orbital electron populations
1.22127 0.96532 1.01444 1.01682 1.21884 0.92205 0.98284 0.86617
0.90511 1.21064 0.86126 0.98263 0.93275 1.43835 0.98857 1.21085
1.68314 1.20775 0.92845 0.86270 0.98265 1.19039 0.96771 1.05011
1.17207 0.91696 1.24985 0.98821 0.98938 0.96815 1.70080 1.13642
1.46241 1.24804 0.86276 0.80138 0.80699 0.79940 1.20284 1.21635
1.21817 1.45851 1.64995 1.14424 1.08591 1.19380 0.77461 0.86616
0.83840 1.90649 1.51623 1.15993 1.85290 1.22358 1.02901 1.00349
0.92928 0.85845 1.23126 0.89271 1.03621 1.00931 1.20949 1.03561
1.00160 0.87108 0.85014 1.19154 0.94534 0.96347 0.95213 1.21148
0.99650 0.94280 0.97024 1.21070 0.96731 0.99992 0.93635 1.21083
0.96557 0.95678 1.01898 1.17672 0.90794 0.97147 0.89707 1.91529
1.58577 1.88668 1.72080 1.17480 0.94601 0.88149 0.94248 1.91552
1.75519 1.51744 1.91275 0.92072 0.92899 0.92881 0.92997 0.92987
0.95112 0.94154 0.98409 0.93776 0.75985 0.87330 0.87073 0.83812
0.84066 0.83777
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16
2 C 0.12 2.07 2.88 -67.93 -0.20 1.87 16
3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16
4 C 0.14 2.68 5.30 -4.04 -0.02 2.66 16
5 N -0.60 -14.04 2.82 -181.12 -0.51 -14.55 16
6 C 0.16 3.94 8.98 59.84 0.54 4.48 16
7 C -0.25 -6.24 8.85 -15.06 -0.13 -6.37 16
8 H 0.07 1.51 6.23 -52.49 -0.33 1.18 16
9 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16
10 N -0.90 -25.33 10.72 55.49 0.59 -24.74 16
11 Si 0.90 20.34 29.58 -169.99 -5.03 15.31 16
12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16
13 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16
14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
15 N -0.69 -11.97 4.49 -53.81 -0.24 -12.21 16
16 C 0.54 9.54 7.58 -10.99 -0.08 9.45 16
17 O -0.56 -11.51 15.92 5.55 0.09 -11.42 16
18 C -0.16 -2.29 5.82 -91.77 -0.53 -2.82 16
19 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16
20 C -0.13 -1.65 9.56 -26.73 -0.26 -1.91 16
21 C -0.10 -1.29 5.31 -91.77 -0.49 -1.78 16
22 H 0.13 1.97 7.39 -51.93 -0.38 1.59 16
23 C -0.05 -0.58 5.62 -104.57 -0.59 -1.17 16
24 C -0.10 -0.90 9.29 -39.58 -0.37 -1.27 16
25 C -0.10 -0.69 10.04 -39.58 -0.40 -1.09 16
26 C -0.13 -1.07 10.02 -39.53 -0.40 -1.47 16
27 C 0.07 0.73 7.31 -39.37 -0.29 0.44 16
28 F -0.13 -1.55 17.18 2.25 0.04 -1.51 16
29 C 0.08 0.94 7.25 -39.37 -0.29 0.65 16
30 F -0.12 -1.78 16.53 2.25 0.04 -1.74 16
31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16
35 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16
36 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16
37 H 0.04 1.05 7.31 -51.93 -0.38 0.67 16
38 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16
39 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16
40 H 0.40 6.82 6.51 -40.82 -0.27 6.56 16
41 H 0.11 1.07 6.18 -51.93 -0.32 0.75 16
42 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16
43 H 0.14 1.04 6.03 -52.49 -0.32 0.73 16
44 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16
45 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16
LS Contribution 380.77 15.07 5.74 5.74
Total: -1.00 -30.93 380.77 -8.63 -39.56
By element:
Atomic # 1 Polarization: 11.97 SS G_CDS: -6.12 Total: 5.85 kcal
Atomic # 6 Polarization: 2.93 SS G_CDS: -3.23 Total: -0.30 kcal
Atomic # 7 Polarization: -51.34 SS G_CDS: -0.16 Total: -51.49 kcal
Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal
Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal
Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -30.93 -8.63 -39.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001722914655.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.845 kcal
(2) G-P(sol) polarization free energy of solvation -30.929 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.773 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.403 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds