Wall clock time and date at job start Tue Mar 31 2020 21:06:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09004 * 109.47159 * 2 1
4 4 C 1.53003 * 109.46470 * 119.99643 * 2 1 3
5 5 N 1.46506 * 109.46911 * 175.00475 * 4 2 1
6 6 C 1.46493 * 120.00400 * 89.99529 * 5 4 2
7 7 C 1.36940 * 119.99662 * 270.00058 * 5 4 2
8 8 H 1.08001 * 119.99959 * 22.01104 * 7 5 4
9 9 C 1.38809 * 119.99639 * 202.01274 * 7 5 4
10 10 N 1.31618 * 120.00462 * 14.21776 * 9 7 5
11 11 Si 1.86807 * 119.99594 * 194.21563 * 9 7 5
12 12 H 1.48499 * 109.47296 * 0.02562 * 11 9 7
13 13 H 1.48509 * 109.46835 * 120.00071 * 11 9 7
14 14 H 1.48498 * 109.47038 * 239.99659 * 11 9 7
15 15 N 1.46493 * 109.47504 * 239.99280 * 2 1 3
16 16 C 1.34780 * 119.99978 * 85.00092 * 15 2 1
17 17 O 1.21285 * 119.99566 * 0.02562 * 16 15 2
18 18 C 1.50696 * 120.00138 * 179.97438 * 16 15 2
19 19 H 1.09000 * 115.55868 * 34.32046 * 18 16 15
20 20 C 1.52995 * 117.50026 * 248.62069 * 18 16 15
21 21 C 1.53000 * 60.00548 * 252.51417 * 20 18 16
22 22 H 1.08996 * 117.49947 * 107.51077 * 21 20 18
23 23 C 1.50700 * 117.49999 * 252.51617 * 21 20 18
24 24 C 1.38261 * 119.99900 * 8.85293 * 23 21 20
25 25 C 1.38216 * 120.06765 * 180.25953 * 24 23 21
26 26 C 1.38254 * 120.06834 * 359.49401 * 25 24 23
27 27 C 1.38364 * 120.00280 * 0.25078 * 26 25 24
28 28 F 1.35104 * 120.03524 * 180.02562 * 27 26 25
29 29 C 1.38363 * 119.99947 * 188.61028 * 23 21 20
30 30 F 1.35102 * 120.03762 * 359.96628 * 29 23 21
31 31 H 1.08993 * 109.47576 * 300.00779 * 1 2 3
32 32 H 1.09004 * 109.46450 * 60.00585 * 1 2 3
33 33 H 1.08995 * 109.47115 * 179.97438 * 1 2 3
34 34 H 1.09000 * 109.47277 * 294.99849 * 4 2 1
35 35 H 1.09000 * 109.47375 * 55.00393 * 4 2 1
36 36 H 1.09005 * 109.46930 * 95.13990 * 6 5 4
37 37 H 1.08997 * 109.47890 * 215.14522 * 6 5 4
38 38 H 1.08998 * 109.47237 * 335.14726 * 6 5 4
39 39 H 0.96998 * 120.00014 * 179.97438 * 10 9 7
40 40 H 0.96997 * 120.00226 * 265.00515 * 15 2 1
41 41 H 1.09000 * 117.49974 * 145.02066 * 20 18 16
42 42 H 1.08998 * 117.52127 * 359.97438 * 20 18 16
43 43 H 1.07999 * 119.96728 * 0.02562 * 24 23 21
44 44 H 1.07997 * 119.96207 * 179.77185 * 25 24 23
45 45 H 1.08005 * 119.99861 * 180.23902 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2494
5 7 3.5000 -0.8263 1.1908
6 6 4.3342 0.2341 1.7614
7 6 4.0849 -1.9158 0.6026
8 1 3.5312 -2.5056 -0.1129
9 6 5.3896 -2.2622 0.9261
10 7 5.9682 -1.7333 1.9834
11 14 6.3242 -3.4793 -0.1393
12 1 5.4571 -3.9244 -1.2596
13 1 7.5413 -2.8265 -0.6852
14 1 6.7177 -4.6538 0.6798
15 7 2.0184 -0.6907 -1.1960
16 6 2.1472 -0.0185 -2.3571
17 8 1.8592 1.1584 -2.4115
18 6 2.6502 -0.7288 -3.5873
19 1 2.3534 -1.7734 -3.6815
20 6 4.0319 -0.3365 -4.1143
21 6 2.7742 0.0893 -4.8743
22 1 2.4922 1.1412 -4.8315
23 6 2.4767 -0.6110 -6.1752
24 6 3.2174 -1.7166 -6.5502
25 6 2.9493 -2.3567 -7.7455
26 6 1.9332 -1.8990 -8.5637
27 6 1.1868 -0.7960 -8.1888
28 9 0.1933 -0.3485 -8.9876
29 6 1.4592 -0.1504 -6.9919
30 9 0.7314 0.9265 -6.6235
31 1 -0.3634 0.5139 0.8898
32 1 -0.3632 0.5138 -0.8901
33 1 -0.3633 -1.0276 -0.0005
34 1 1.7515 -0.1582 2.1370
35 1 1.6053 -1.7198 1.2953
36 1 4.6179 -0.0347 2.7790
37 1 5.2312 0.3571 1.1546
38 1 3.7741 1.1691 1.7755
39 1 6.8797 -1.9757 2.2096
40 1 2.2491 -1.6318 -1.1524
41 1 4.6443 -1.1231 -4.5552
42 1 4.5773 0.4356 -3.5717
43 1 4.0086 -2.0783 -5.9103
44 1 3.5313 -3.2180 -8.0385
45 1 1.7222 -2.4024 -9.4957
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001722914655.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:06:49
Heat of formation + Delta-G solvation = -70.173197 kcal
Electronic energy + Delta-G solvation = -29358.109322 eV
Core-core repulsion = 25012.494994 eV
Total energy + Delta-G solvation = -4345.614328 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.53268 -49.62337 -41.27693 -40.08811 -38.30681 -37.18883 -35.68684 -33.17434
-32.00498 -31.47565 -31.20912 -28.05990 -27.37843 -25.96366 -25.15978 -23.73811
-23.40280 -22.02322 -21.45722 -21.07821 -19.14462 -18.86963 -18.41448 -17.97839
-17.62311 -17.38781 -17.07910 -16.91225 -16.30320 -16.05644 -15.78051 -15.63685
-15.49622 -15.35445 -15.20247 -14.72070 -14.57260 -14.14473 -13.81294 -13.63073
-13.47305 -13.39996 -13.29386 -13.11119 -12.84764 -12.68831 -12.65991 -12.50523
-12.23440 -12.20405 -11.97419 -11.86872 -11.77345 -11.72814 -11.58755 -10.82395
-10.57411 -9.90296 -9.78953 -9.75654 -8.72769 -7.74544 -5.22816 -0.10082
-0.08661 1.53319 1.54067 1.57666 1.64406 2.18758 2.41212 2.57950
2.70398 2.95793 3.26451 3.39975 3.43688 3.57861 3.69745 3.74136
3.82867 3.90691 4.02742 4.11131 4.18715 4.19932 4.41112 4.50939
4.68576 4.74966 4.76215 4.81112 4.84218 4.86810 4.92467 4.96411
4.99051 5.01643 5.15793 5.22019 5.28626 5.32030 5.42248 5.64596
5.69429 5.75078 5.76287 6.36722 6.72621 7.18545 7.38512 7.90932
8.38419 9.29643
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.013177 B = 0.003201 C = 0.002720
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2124.338950 B = 8744.599402 C =10291.624651
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.124 3.876
3 H 0.047 0.953
4 C 0.142 3.858
5 N -0.613 5.613
6 C 0.178 3.822
7 C -0.244 4.244
8 H 0.086 0.914
9 C -0.060 4.060
10 N -0.944 5.944
11 Si 0.961 3.039
12 H -0.245 1.245
13 H -0.300 1.300
14 H -0.302 1.302
15 N -0.688 5.688
16 C 0.533 3.467
17 O -0.596 6.596
18 C -0.173 4.173
19 H 0.152 0.848
20 C -0.121 4.121
21 C -0.095 4.095
22 H 0.099 0.901
23 C -0.062 4.062
24 C -0.097 4.097
25 C -0.079 4.079
26 C -0.121 4.121
27 C 0.049 3.951
28 F -0.142 7.142
29 C 0.041 3.959
30 F -0.148 7.148
31 H 0.078 0.922
32 H 0.039 0.961
33 H 0.070 0.930
34 H 0.063 0.937
35 H 0.065 0.935
36 H 0.007 0.993
37 H 0.011 0.989
38 H 0.018 0.982
39 H 0.243 0.757
40 H 0.408 0.592
41 H 0.146 0.854
42 H 0.091 0.909
43 H 0.167 0.833
44 H 0.183 0.817
45 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.971 -4.618 -19.384 21.111
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.017 3.983
3 H 0.066 0.934
4 C 0.016 3.984
5 N -0.335 5.335
6 C 0.033 3.967
7 C -0.374 4.374
8 H 0.104 0.896
9 C -0.254 4.254
10 N -0.591 5.591
11 Si 0.790 3.210
12 H -0.168 1.168
13 H -0.227 1.227
14 H -0.230 1.230
15 N -0.337 5.337
16 C 0.321 3.679
17 O -0.479 6.479
18 C -0.193 4.193
19 H 0.169 0.831
20 C -0.158 4.158
21 C -0.114 4.114
22 H 0.117 0.883
23 C -0.063 4.063
24 C -0.115 4.115
25 C -0.096 4.096
26 C -0.139 4.139
27 C 0.029 3.971
28 F -0.121 7.121
29 C 0.021 3.979
30 F -0.126 7.126
31 H 0.097 0.903
32 H 0.058 0.942
33 H 0.089 0.911
34 H 0.082 0.918
35 H 0.083 0.917
36 H 0.025 0.975
37 H 0.029 0.971
38 H 0.037 0.963
39 H 0.052 0.948
40 H 0.245 0.755
41 H 0.163 0.837
42 H 0.109 0.891
43 H 0.184 0.816
44 H 0.201 0.799
45 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges -7.114 -3.768 -19.327 20.936
hybrid contribution 0.365 0.120 0.095 0.395
sum -6.749 -3.647 -19.232 20.706
Atomic orbital electron populations
1.22016 0.93960 1.02691 1.01968 1.21679 0.94080 0.96383 0.86184
0.93432 1.21219 0.83551 0.99318 0.94346 1.44071 1.00674 1.20587
1.68203 1.20474 0.92337 0.87570 0.96312 1.19527 0.96773 1.04507
1.16601 0.89646 1.25810 1.00127 1.01339 0.98136 1.70266 1.13427
1.48510 1.26938 0.85281 0.78740 0.77941 0.79071 1.16831 1.22723
1.23003 1.45867 1.64835 1.14507 1.08528 1.20042 0.76688 0.86303
0.84882 1.90629 1.53320 1.17914 1.86018 1.22408 1.04104 1.01323
0.91495 0.83080 1.23245 0.88820 1.03827 0.99931 1.20732 1.03918
0.98724 0.88005 0.88284 1.19087 0.95284 0.97608 0.94325 1.21459
0.99217 0.92899 0.97885 1.21549 0.95773 1.00161 0.92148 1.21503
0.95506 0.94029 1.02878 1.17992 0.91428 0.98322 0.89387 1.91493
1.59284 1.89044 1.72281 1.17900 0.95719 0.88500 0.95754 1.91477
1.76329 1.53166 1.91675 0.90265 0.94164 0.91079 0.91847 0.91701
0.97514 0.97057 0.96321 0.94751 0.75475 0.83660 0.89089 0.81560
0.79933 0.80848
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.10 9.48 71.98 0.68 -3.41 16
2 C 0.12 4.26 2.88 44.99 0.13 4.39 16
3 H 0.05 1.92 7.58 -2.39 -0.02 1.91 16
4 C 0.14 5.21 5.30 86.38 0.46 5.67 16
5 N -0.61 -28.43 2.82 -726.93 -2.05 -30.48 16
6 C 0.18 8.79 8.98 127.77 1.15 9.94 16
7 C -0.24 -11.84 8.85 84.03 0.74 -11.10 16
8 H 0.09 3.72 6.23 -2.91 -0.02 3.70 16
9 C -0.06 -3.11 5.08 84.86 0.43 -2.68 16
10 N -0.94 -54.07 10.72 21.65 0.23 -53.84 16
11 Si 0.96 40.93 29.58 68.60 2.03 42.96 16
12 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16
13 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16
14 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16
15 N -0.69 -23.18 4.49 -442.53 -1.99 -25.16 16
16 C 0.53 18.78 7.58 87.66 0.66 19.44 16
17 O -0.60 -25.63 15.92 -3.05 -0.05 -25.68 16
18 C -0.17 -4.57 5.82 -11.54 -0.07 -4.64 16
19 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16
20 C -0.12 -2.82 9.56 30.59 0.29 -2.53 16
21 C -0.09 -2.46 5.31 -11.54 -0.06 -2.52 16
22 H 0.10 3.20 7.39 -2.39 -0.02 3.18 16
23 C -0.06 -1.32 5.62 -19.83 -0.11 -1.43 16
24 C -0.10 -1.30 9.29 22.27 0.21 -1.09 16
25 C -0.08 -0.72 10.04 22.27 0.22 -0.50 16
26 C -0.12 -1.49 10.02 22.30 0.22 -1.27 16
27 C 0.05 1.01 7.31 22.41 0.16 1.17 16
28 F -0.14 -3.36 17.18 44.97 0.77 -2.59 16
29 C 0.04 1.03 7.25 22.41 0.16 1.19 16
30 F -0.15 -4.59 16.53 44.97 0.74 -3.85 16
31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16
32 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16
33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16
34 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16
35 H 0.06 2.23 8.04 -2.39 -0.02 2.21 16
36 H 0.01 0.36 7.36 -2.38 -0.02 0.34 16
37 H 0.01 0.58 7.31 -2.39 -0.02 0.57 16
38 H 0.02 0.81 8.03 -2.39 -0.02 0.79 16
39 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16
40 H 0.41 12.88 6.51 -92.71 -0.60 12.27 16
41 H 0.15 2.25 6.18 -2.39 -0.01 2.24 16
42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16
43 H 0.17 1.46 6.03 -2.91 -0.02 1.44 16
44 H 0.18 0.27 8.06 -2.91 -0.02 0.24 16
45 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16
Total: -1.00 -71.36 380.77 5.41 -65.96
By element:
Atomic # 1 Polarization: 21.61 SS G_CDS: 0.42 Total: 22.03 kcal
Atomic # 6 Polarization: 5.36 SS G_CDS: 5.29 Total: 10.65 kcal
Atomic # 7 Polarization: -105.68 SS G_CDS: -3.80 Total: -109.48 kcal
Atomic # 8 Polarization: -25.63 SS G_CDS: -0.05 Total: -25.68 kcal
Atomic # 9 Polarization: -7.96 SS G_CDS: 1.52 Total: -6.44 kcal
Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal
Total: -71.36 5.41 -65.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001722914655.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.217 kcal
(2) G-P(sol) polarization free energy of solvation -71.365 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.173 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds