Wall clock time and date at job start Tue Mar 31 2020 20:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.53003 * 109.47022 * 239.99583 * 2 1 3 5 5 C 1.50703 * 109.46861 * 65.00538 * 4 2 1 6 6 C 1.38256 * 119.99737 * 89.99520 * 5 4 2 7 7 C 1.38218 * 120.02796 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.01692 * 0.02641 * 7 6 5 9 9 C 1.38336 * 119.98368 * 359.97438 * 8 7 6 10 10 Cl 1.73598 * 120.01396 * 180.02562 * 9 8 7 11 11 C 1.38192 * 119.98982 * 269.71947 * 5 4 2 12 12 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 13 13 O 1.21283 * 120.00521 * 119.72525 * 12 2 1 14 14 N 1.34784 * 119.99774 * 299.99631 * 12 2 1 15 15 C 1.46499 * 119.99971 * 359.72768 * 14 12 2 16 16 C 1.46499 * 119.99893 * 179.72962 * 14 12 2 17 17 C 1.52996 * 109.47198 * 90.00083 * 16 14 12 18 18 C 1.53000 * 109.46861 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.47110 * 179.97438 * 18 17 16 20 20 C 1.36940 * 120.00282 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99862 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00142 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86789 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47149 * 59.99903 * 24 22 20 26 26 H 1.48498 * 109.47442 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47324 * 300.00425 * 24 22 20 28 28 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 31 31 H 1.09001 * 109.47048 * 184.99682 * 4 2 1 32 32 H 1.08995 * 109.47509 * 305.00425 * 4 2 1 33 33 H 1.08006 * 119.98661 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.99591 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.00953 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00959 * 0.02562 * 11 5 4 37 37 H 1.08999 * 109.47256 * 89.99766 * 15 14 12 38 38 H 1.08998 * 109.47416 * 209.99869 * 15 14 12 39 39 H 1.09008 * 109.47058 * 330.00468 * 15 14 12 40 40 H 1.08997 * 109.46865 * 210.00034 * 16 14 12 41 41 H 1.08998 * 109.47058 * 329.99547 * 16 14 12 42 42 H 1.08997 * 109.47172 * 299.99762 * 17 16 14 43 43 H 1.08998 * 109.47554 * 59.99767 * 17 16 14 44 44 H 1.08997 * 109.47277 * 299.99996 * 18 17 16 45 45 H 1.09000 * 109.47424 * 60.00339 * 18 17 16 46 46 H 0.97006 * 119.99979 * 0.02562 * 19 18 17 47 47 H 0.96998 * 119.99546 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4817 1.0331 -2.9792 7 6 2.1169 1.7469 -4.1052 8 6 0.9114 1.4858 -4.7292 9 6 0.0702 0.5093 -4.2267 10 17 -1.4436 0.1802 -5.0101 11 6 0.4385 -0.2090 -3.1028 12 6 2.0323 -0.7105 1.2304 13 8 2.7254 -1.6995 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 0.8694 0.9447 2.5890 16 6 2.1901 -0.9441 3.6507 17 6 3.5397 -0.3580 4.0700 18 6 4.0442 -1.0826 5.3196 19 7 5.3368 -0.5219 5.7208 20 6 5.9855 -1.0155 6.8211 21 1 5.5444 -1.8185 7.3929 22 6 7.2101 -0.4839 7.2015 23 7 7.7474 0.4951 6.5049 24 14 8.0953 -1.1578 8.7020 25 1 8.3775 -2.6021 8.5030 26 1 9.3726 -0.4252 8.8938 27 1 7.2391 -0.9816 9.9025 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 3.4235 1.2378 -2.4919 34 1 2.7739 2.5090 -4.4976 35 1 0.6264 2.0439 -5.6087 36 1 -0.2160 -0.9743 -2.7125 37 1 -0.1799 0.6513 2.6202 38 1 1.1280 1.4679 3.5096 39 1 1.0372 1.6037 1.7370 40 1 1.4713 -0.8165 4.4601 41 1 2.3068 -2.0056 3.4325 42 1 4.2584 -0.4856 3.2606 43 1 3.4229 0.7035 4.2882 44 1 3.3253 -0.9546 6.1289 45 1 4.1610 -2.1442 5.1018 46 1 5.7329 0.1997 5.2074 47 1 8.6029 0.8669 6.7710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723223932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:40 Heat of formation + Delta-G solvation = -17.105190 kcal Electronic energy + Delta-G solvation = -26044.982235 eV Core-core repulsion = 22253.465788 eV Total energy + Delta-G solvation = -3791.516447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.54765 -39.60190 -36.95407 -36.26438 -35.34103 -34.73418 -32.37115 -31.22920 -31.15072 -29.61776 -27.41267 -26.78263 -25.65253 -23.73675 -23.03365 -22.53185 -21.27724 -20.77484 -19.07713 -17.59858 -17.02740 -16.95509 -16.33236 -16.07761 -15.76750 -15.39585 -14.76155 -14.57025 -14.41098 -14.20338 -14.11603 -13.75810 -13.41408 -13.24429 -13.13733 -12.97762 -12.84256 -12.59235 -12.31211 -12.00383 -11.93852 -11.85330 -11.76553 -11.73625 -11.31886 -11.22620 -11.15295 -10.90370 -10.81596 -10.72539 -10.37792 -10.08896 -9.74008 -9.65060 -9.29009 -9.04913 -8.83423 -8.66621 -6.88585 -5.73012 -3.01617 0.74433 0.83823 1.72716 2.59657 2.91446 3.22583 3.46600 3.50401 3.51908 4.13921 4.38091 4.46745 4.59692 4.61895 4.63073 4.72054 4.85778 4.89443 4.96856 5.07698 5.13641 5.15961 5.28649 5.34853 5.40158 5.45684 5.47601 5.53997 5.59128 5.60185 5.71630 5.79112 5.85253 5.86794 5.93271 5.94932 6.10674 6.16728 6.32319 6.39113 6.41278 6.54014 6.88749 6.91338 7.33134 7.72525 8.14406 8.46053 9.56695 10.15464 10.50114 11.50044 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.001732 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.288530 B =16163.584956 C =16763.149966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.064 4.064 5 C -0.063 4.063 6 C -0.111 4.111 7 C -0.104 4.104 8 C -0.117 4.117 9 C -0.034 4.034 10 Cl -0.074 7.074 11 C -0.106 4.106 12 C 0.515 3.485 13 O -0.533 6.533 14 N -0.614 5.614 15 C 0.075 3.925 16 C 0.118 3.882 17 C -0.138 4.138 18 C 0.156 3.844 19 N -0.733 5.733 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.020 0.980 46 H 0.383 0.617 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.140 4.217 -23.736 32.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.124 4.124 3 H 0.116 0.884 4 C -0.102 4.102 5 C -0.063 4.063 6 C -0.129 4.129 7 C -0.122 4.122 8 C -0.136 4.136 9 C -0.060 4.060 10 Cl -0.045 7.045 11 C -0.125 4.125 12 C 0.303 3.697 13 O -0.410 6.410 14 N -0.347 5.347 15 C -0.068 4.068 16 C -0.004 4.004 17 C -0.177 4.177 18 C 0.028 3.972 19 N -0.377 5.377 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.217 0.783 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.872 3.556 -23.705 31.784 hybrid contribution 0.523 0.071 0.611 0.807 sum -20.349 3.626 -23.094 30.993 Atomic orbital electron populations 1.22133 0.92921 1.03097 1.03543 1.21232 0.97785 1.00847 0.92542 0.88363 1.20452 1.02750 0.98089 0.88873 1.19864 0.93533 0.96386 0.96552 1.21262 0.99956 0.95441 0.96255 1.21138 0.95900 0.99620 0.95584 1.21059 0.94213 0.97530 1.00792 1.20934 0.89112 0.99574 0.96388 1.98377 1.31093 1.94871 1.80197 1.20998 0.96972 1.00058 0.94466 1.20568 0.80031 0.84687 0.84416 1.90730 1.37669 1.26208 1.86362 1.47871 1.51523 1.29050 1.06210 1.21976 0.94313 0.87231 1.03321 1.21498 0.95770 0.97642 0.85521 1.22046 0.96048 1.00275 0.99342 1.20543 0.88609 0.95539 0.92506 1.42344 1.19240 1.43180 1.32959 1.19212 1.00630 1.14154 1.03052 0.91195 1.24756 0.97935 0.98937 0.99539 1.69659 1.19245 1.28380 1.41080 0.86237 0.78961 0.78175 0.82640 1.21250 1.21688 1.21285 0.91278 0.92041 0.90868 0.89411 0.89891 0.85125 0.84995 0.85104 0.84898 0.92267 0.90696 0.90937 0.90549 0.89777 0.91618 0.92056 0.96429 0.96223 0.78341 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.42 37.16 0.31 -0.77 16 2 C -0.10 -0.90 1.91 -91.77 -0.18 -1.07 16 3 H 0.10 0.76 7.39 -51.93 -0.38 0.37 16 4 C -0.06 -0.57 4.19 -27.88 -0.12 -0.69 16 5 C -0.06 -0.49 4.70 -104.63 -0.49 -0.99 16 6 C -0.11 -0.81 9.70 -39.58 -0.38 -1.19 16 7 C -0.10 -0.67 10.04 -39.59 -0.40 -1.07 16 8 C -0.12 -0.81 9.83 -39.55 -0.39 -1.19 16 9 C -0.03 -0.26 6.32 -39.49 -0.25 -0.51 16 10 Cl -0.07 -0.56 28.96 -51.86 -1.50 -2.06 16 11 C -0.11 -0.81 7.77 -39.55 -0.31 -1.12 16 12 C 0.52 6.50 7.07 -10.98 -0.08 6.42 16 13 O -0.53 -8.96 15.50 5.56 0.09 -8.88 16 14 N -0.61 -7.09 2.87 -181.57 -0.52 -7.61 16 15 C 0.07 0.58 8.80 59.85 0.53 1.10 16 16 C 0.12 1.60 5.41 -4.04 -0.02 1.58 16 17 C -0.14 -2.35 5.65 -26.73 -0.15 -2.50 16 18 C 0.16 3.27 6.26 -4.04 -0.03 3.24 16 19 N -0.73 -19.46 5.60 -59.91 -0.34 -19.79 16 20 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 24 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H 0.07 0.43 6.28 -51.93 -0.33 0.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.43 4.54 -51.93 -0.24 0.19 16 31 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 32 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 34 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.13 0.92 8.05 -52.49 -0.42 0.49 16 37 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 38 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 39 H 0.07 0.45 6.02 -51.92 -0.31 0.14 16 40 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.08 1.26 7.42 -51.93 -0.39 0.88 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.38 10.67 7.67 -40.82 -0.31 10.36 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -34.25 395.90 -10.14 -44.39 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -7.34 Total: 4.81 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -2.19 Total: -6.42 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.13 Total: -55.66 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.25 -10.14 -44.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723223932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.281 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds