Wall clock time and date at job start Tue Mar 31 2020 20:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47037 * 2 1 4 4 C 1.53003 * 109.47022 * 239.99583 * 2 1 3 5 5 C 1.50703 * 109.46861 * 65.00538 * 4 2 1 6 6 C 1.38256 * 119.99737 * 89.99520 * 5 4 2 7 7 C 1.38218 * 120.02796 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.01692 * 0.02641 * 7 6 5 9 9 C 1.38336 * 119.98368 * 359.97438 * 8 7 6 10 10 Cl 1.73598 * 120.01396 * 180.02562 * 9 8 7 11 11 C 1.38192 * 119.98982 * 269.71947 * 5 4 2 12 12 C 1.50697 * 109.46969 * 120.00347 * 2 1 3 13 13 O 1.21283 * 120.00521 * 119.72525 * 12 2 1 14 14 N 1.34784 * 119.99774 * 299.99631 * 12 2 1 15 15 C 1.46499 * 119.99971 * 359.72768 * 14 12 2 16 16 C 1.46499 * 119.99893 * 179.72962 * 14 12 2 17 17 C 1.52996 * 109.47198 * 90.00083 * 16 14 12 18 18 C 1.53000 * 109.46861 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.47110 * 179.97438 * 18 17 16 20 20 C 1.36940 * 120.00282 * 179.97438 * 19 18 17 21 21 H 1.07997 * 119.99862 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00142 * 180.02562 * 20 19 18 23 23 N 1.31622 * 119.99742 * 0.02562 * 22 20 19 24 24 Si 1.86789 * 120.00055 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47149 * 59.99903 * 24 22 20 26 26 H 1.48498 * 109.47442 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47324 * 300.00425 * 24 22 20 28 28 H 1.09003 * 109.47126 * 59.99926 * 1 2 3 29 29 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47277 * 299.99945 * 1 2 3 31 31 H 1.09001 * 109.47048 * 184.99682 * 4 2 1 32 32 H 1.08995 * 109.47509 * 305.00425 * 4 2 1 33 33 H 1.08006 * 119.98661 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.99591 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.00953 * 179.97438 * 8 7 6 36 36 H 1.07999 * 120.00959 * 0.02562 * 11 5 4 37 37 H 1.08999 * 109.47256 * 89.99766 * 15 14 12 38 38 H 1.08998 * 109.47416 * 209.99869 * 15 14 12 39 39 H 1.09008 * 109.47058 * 330.00468 * 15 14 12 40 40 H 1.08997 * 109.46865 * 210.00034 * 16 14 12 41 41 H 1.08998 * 109.47058 * 329.99547 * 16 14 12 42 42 H 1.08997 * 109.47172 * 299.99762 * 17 16 14 43 43 H 1.08998 * 109.47554 * 59.99767 * 17 16 14 44 44 H 1.08997 * 109.47277 * 299.99996 * 18 17 16 45 45 H 1.09000 * 109.47424 * 60.00339 * 18 17 16 46 46 H 0.97006 * 119.99979 * 0.02562 * 19 18 17 47 47 H 0.96998 * 119.99546 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0570 -2.4766 6 6 2.4817 1.0331 -2.9792 7 6 2.1169 1.7469 -4.1052 8 6 0.9114 1.4858 -4.7292 9 6 0.0702 0.5093 -4.2267 10 17 -1.4436 0.1802 -5.0101 11 6 0.4385 -0.2090 -3.1028 12 6 2.0323 -0.7105 1.2304 13 8 2.7254 -1.6995 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 0.8694 0.9447 2.5890 16 6 2.1901 -0.9441 3.6507 17 6 3.5397 -0.3580 4.0700 18 6 4.0442 -1.0826 5.3196 19 7 5.3368 -0.5219 5.7208 20 6 5.9855 -1.0155 6.8211 21 1 5.5444 -1.8185 7.3929 22 6 7.2101 -0.4839 7.2015 23 7 7.7474 0.4951 6.5049 24 14 8.0953 -1.1578 8.7020 25 1 8.3775 -2.6021 8.5030 26 1 9.3726 -0.4252 8.8938 27 1 7.2391 -0.9816 9.9025 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 3.1263 -0.7995 -1.2056 32 1 1.6053 -1.7198 -1.2952 33 1 3.4235 1.2378 -2.4919 34 1 2.7739 2.5090 -4.4976 35 1 0.6264 2.0439 -5.6087 36 1 -0.2160 -0.9743 -2.7125 37 1 -0.1799 0.6513 2.6202 38 1 1.1280 1.4679 3.5096 39 1 1.0372 1.6037 1.7370 40 1 1.4713 -0.8165 4.4601 41 1 2.3068 -2.0056 3.4325 42 1 4.2584 -0.4856 3.2606 43 1 3.4229 0.7035 4.2882 44 1 3.3253 -0.9546 6.1289 45 1 4.1610 -2.1442 5.1018 46 1 5.7329 0.1997 5.2074 47 1 8.6029 0.8669 6.7710 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723223932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:39 Heat of formation + Delta-G solvation = -36.543152 kcal Electronic energy + Delta-G solvation = -26045.825128 eV Core-core repulsion = 22253.465788 eV Total energy + Delta-G solvation = -3792.359340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40334 -40.27317 -37.67249 -37.43993 -36.46732 -35.96887 -34.04748 -32.24322 -31.69891 -31.11120 -28.22050 -27.50363 -27.07238 -25.16267 -23.80552 -23.52305 -22.56226 -21.78268 -19.97769 -19.16898 -18.32959 -17.63166 -17.36673 -16.73452 -16.60237 -16.36603 -16.25239 -15.90890 -15.43118 -15.35661 -15.01620 -14.76668 -14.63303 -14.42665 -14.00671 -13.80250 -13.66076 -13.53667 -13.39647 -13.09247 -12.97342 -12.75267 -12.72249 -12.49403 -12.43660 -12.38077 -12.32666 -12.09547 -11.95833 -11.89024 -11.83101 -11.80032 -11.71960 -10.95055 -10.69880 -9.83901 -9.66340 -9.61619 -9.04136 -7.97402 -5.27537 0.18521 0.29649 1.16611 1.45892 1.50097 1.56174 1.62738 2.02477 2.55120 2.65874 3.35700 3.40455 3.78804 3.83753 3.87072 3.92597 4.01085 4.07619 4.18857 4.22172 4.30889 4.33772 4.41877 4.45802 4.52132 4.59119 4.62173 4.68962 4.74353 4.80946 4.84911 4.87540 4.89630 4.99111 5.02241 5.16373 5.26217 5.28244 5.29204 5.31971 5.40353 5.46415 5.55708 5.58605 5.85612 6.24531 6.41543 7.18114 7.30039 8.05199 8.28889 9.26195 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.001732 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.288530 B =16163.584956 C =16763.149966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.093 4.093 3 H 0.114 0.886 4 C -0.059 4.059 5 C -0.068 4.068 6 C -0.118 4.118 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.043 4.043 10 Cl -0.076 7.076 11 C -0.110 4.110 12 C 0.507 3.493 13 O -0.586 6.586 14 N -0.612 5.612 15 C 0.066 3.934 16 C 0.126 3.874 17 C -0.120 4.120 18 C 0.154 3.846 19 N -0.749 5.749 20 C -0.252 4.252 21 H 0.077 0.923 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.979 3.021 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.274 1.274 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.034 0.966 45 H 0.013 0.987 46 H 0.372 0.628 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.824 5.205 -23.772 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 H 0.132 0.868 4 C -0.097 4.097 5 C -0.068 4.068 6 C -0.137 4.137 7 C -0.121 4.121 8 C -0.138 4.138 9 C -0.070 4.070 10 Cl -0.047 7.047 11 C -0.129 4.129 12 C 0.297 3.703 13 O -0.466 6.466 14 N -0.344 5.344 15 C -0.075 4.075 16 C 0.003 3.997 17 C -0.159 4.159 18 C 0.027 3.973 19 N -0.391 5.391 20 C -0.383 4.383 21 H 0.095 0.905 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.807 3.193 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.200 1.200 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.031 0.969 46 H 0.204 0.796 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.624 4.550 -23.739 33.107 hybrid contribution 1.007 -0.240 0.576 1.184 sum -21.618 4.310 -23.163 31.976 Atomic orbital electron populations 1.22112 0.91010 1.03136 1.04769 1.21222 0.99155 1.00767 0.90260 0.86821 1.20331 1.01470 0.97988 0.89881 1.19730 0.93972 0.96769 0.96318 1.21427 1.00119 0.95405 0.96705 1.21394 0.95994 0.99686 0.94987 1.21311 0.94098 0.97211 1.01153 1.21050 0.89334 1.00033 0.96563 1.98375 1.31219 1.94926 1.80188 1.21034 0.96996 1.00240 0.94637 1.21315 0.79147 0.84180 0.85676 1.90704 1.40058 1.28642 1.87153 1.47966 1.51358 1.29883 1.05194 1.22295 0.94896 0.85927 1.04432 1.21294 0.94569 0.96591 0.87290 1.21846 0.97216 1.00355 0.96503 1.20709 0.86761 0.95241 0.94560 1.42593 1.21015 1.43066 1.32461 1.19656 1.01029 1.14053 1.03608 0.90492 1.25663 0.98939 0.99575 1.02848 1.69826 1.19510 1.29881 1.42919 0.85130 0.77447 0.77514 0.79170 1.20494 1.21936 1.19954 0.90301 0.92647 0.89303 0.91290 0.90937 0.84572 0.82800 0.83595 0.84557 0.89806 0.90274 0.89131 0.87656 0.91625 0.94462 0.91387 0.94839 0.96942 0.79641 0.93902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.42 71.98 0.61 -1.17 16 2 C -0.09 -1.54 1.91 -11.54 -0.02 -1.56 16 3 H 0.11 1.54 7.39 -2.39 -0.02 1.52 16 4 C -0.06 -1.07 4.19 29.85 0.12 -0.94 16 5 C -0.07 -1.01 4.70 -19.87 -0.09 -1.11 16 6 C -0.12 -1.58 9.70 22.27 0.22 -1.37 16 7 C -0.10 -1.13 10.04 22.26 0.22 -0.90 16 8 C -0.12 -1.42 9.83 22.29 0.22 -1.20 16 9 C -0.04 -0.61 6.32 22.33 0.14 -0.47 16 10 Cl -0.08 -1.06 28.96 -2.72 -0.08 -1.14 16 11 C -0.11 -1.59 7.77 22.29 0.17 -1.42 16 12 C 0.51 12.75 7.07 87.65 0.62 13.37 16 13 O -0.59 -20.56 15.50 -3.04 -0.05 -20.60 16 14 N -0.61 -13.37 2.87 -846.76 -2.43 -15.81 16 15 C 0.07 0.82 8.80 127.77 1.12 1.95 16 16 C 0.13 3.32 5.41 86.38 0.47 3.78 16 17 C -0.12 -4.09 5.65 30.59 0.17 -3.92 16 18 C 0.15 6.46 6.26 86.38 0.54 7.00 16 19 N -0.75 -40.27 5.60 -343.45 -1.92 -42.19 16 20 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 24 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 27 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 28 H 0.08 0.80 6.28 -2.39 -0.01 0.79 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.75 4.54 -2.39 -0.01 0.73 16 31 H 0.07 1.49 7.90 -2.39 -0.02 1.48 16 32 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 33 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 35 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 36 H 0.14 1.79 8.05 -2.91 -0.02 1.77 16 37 H 0.08 0.69 6.94 -2.39 -0.02 0.67 16 38 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 39 H 0.09 0.83 6.02 -2.38 -0.01 0.81 16 40 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 41 H 0.07 1.99 7.42 -2.39 -0.02 1.98 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.37 21.26 7.67 -92.70 -0.71 20.55 16 47 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -75.18 395.90 3.90 -71.28 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.26 Total: 26.06 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 5.82 Total: -5.93 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -4.07 Total: -118.75 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -75.18 3.90 -71.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723223932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.734 kcal (2) G-P(sol) polarization free energy of solvation -75.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds