Wall clock time and date at job start Tue Mar 31 2020 20:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47006 * 119.99754 * 2 1 3 5 5 C 1.50700 * 109.47473 * 295.00228 * 4 2 1 6 6 C 1.38256 * 119.99626 * 89.99693 * 5 4 2 7 7 C 1.38219 * 120.03190 * 180.02562 * 6 5 4 8 8 C 1.38239 * 120.00768 * 0.25303 * 7 6 5 9 9 C 1.38332 * 119.98664 * 359.47554 * 8 7 6 10 10 Cl 1.73606 * 120.01060 * 180.29314 * 9 8 7 11 11 C 1.38199 * 119.99263 * 269.97893 * 5 4 2 12 12 C 1.50692 * 109.47354 * 239.99884 * 2 1 3 13 13 O 1.21282 * 120.00193 * 254.50218 * 12 2 1 14 14 N 1.34779 * 120.00019 * 74.50159 * 12 2 1 15 15 C 1.46500 * 119.99745 * 3.82165 * 14 12 2 16 16 C 1.46495 * 120.00207 * 183.81968 * 14 12 2 17 17 C 1.53003 * 109.46965 * 90.00299 * 16 14 12 18 18 C 1.53003 * 109.47054 * 179.97438 * 17 16 14 19 19 N 1.46502 * 109.47098 * 179.97438 * 18 17 16 20 20 C 1.36937 * 119.99566 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00746 * 359.97438 * 20 19 18 22 22 C 1.38822 * 119.99439 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99444 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00011 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46854 * 90.00586 * 24 22 20 26 26 H 1.48499 * 109.47021 * 210.00325 * 24 22 20 27 27 H 1.48501 * 109.47527 * 330.00048 * 24 22 20 28 28 H 1.09002 * 109.47113 * 308.54688 * 1 2 3 29 29 H 1.08997 * 109.47111 * 68.54945 * 1 2 3 30 30 H 1.08994 * 109.46946 * 188.54982 * 1 2 3 31 31 H 1.09007 * 109.47074 * 175.00031 * 4 2 1 32 32 H 1.09004 * 109.47311 * 55.00218 * 4 2 1 33 33 H 1.08004 * 119.98548 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.99624 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.00598 * 179.73886 * 8 7 6 36 36 H 1.08001 * 120.00486 * 359.97438 * 11 5 4 37 37 H 1.09005 * 109.47157 * 84.79134 * 15 14 12 38 38 H 1.09005 * 109.47406 * 204.78205 * 15 14 12 39 39 H 1.08994 * 109.47495 * 324.78683 * 15 14 12 40 40 H 1.09007 * 109.47395 * 210.00152 * 16 14 12 41 41 H 1.08996 * 109.47144 * 330.00332 * 16 14 12 42 42 H 1.09001 * 109.46735 * 299.99716 * 17 16 14 43 43 H 1.08996 * 109.47163 * 60.00045 * 17 16 14 44 44 H 1.08999 * 109.47425 * 300.00237 * 18 17 16 45 45 H 1.09010 * 109.46997 * 59.99877 * 18 17 16 46 46 H 0.96999 * 119.99683 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99089 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 0.4353 -0.2051 3.0998 7 6 0.0687 0.5087 4.2252 8 6 0.9055 1.4888 4.7253 9 6 2.1148 1.7476 4.1056 10 17 3.1696 2.9731 4.7377 11 6 2.4815 1.0324 2.9793 12 6 2.0324 -0.7104 -1.2304 13 8 2.4992 -1.8260 -1.1384 14 7 1.9630 -0.1060 -2.4330 15 6 1.4772 1.2725 -2.5331 16 6 2.3734 -0.8274 -3.6402 17 6 1.1688 -1.5656 -4.2275 18 6 1.5973 -2.3186 -5.4886 19 7 0.4439 -3.0259 -6.0506 20 6 0.5875 -3.7734 -7.1889 21 1 1.5506 -3.8413 -7.6726 22 6 -0.5055 -4.4432 -7.7217 23 7 -0.3677 -5.1613 -8.8161 24 14 -2.1717 -4.3252 -6.8855 25 1 -2.9232 -3.1707 -7.4402 26 1 -2.9361 -5.5753 -7.1266 27 1 -1.9804 -4.1359 -5.4251 28 1 -0.3633 0.6404 0.8037 29 1 -0.3633 0.3758 -0.9565 30 1 -0.3633 -1.0162 0.1528 31 1 3.1264 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 -0.2210 -0.9673 2.7065 34 1 -0.8737 0.3037 4.7112 35 1 0.6170 2.0493 5.6023 36 1 3.4239 1.2366 2.4929 37 1 2.3004 1.9623 -2.3470 38 1 1.0774 1.4453 -3.5324 39 1 0.6924 1.4357 -1.7946 40 1 2.7584 -0.1189 -4.3737 41 1 3.1520 -1.5468 -3.3865 42 1 0.7839 -2.2741 -3.4940 43 1 0.3902 -0.8462 -4.4812 44 1 1.9820 -1.6098 -6.2219 45 1 2.3761 -3.0379 -5.2353 46 1 -0.4211 -2.9652 -5.6159 47 1 -1.1314 -5.6296 -9.1882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723223933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:43 Heat of formation + Delta-G solvation = -16.195034 kcal Electronic energy + Delta-G solvation = -26142.650690 eV Core-core repulsion = 22351.173711 eV Total energy + Delta-G solvation = -3791.476979 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.58740 -39.65784 -37.01356 -36.39069 -35.31101 -34.92423 -32.36658 -31.51387 -31.05497 -30.10153 -27.36216 -26.99663 -25.86766 -23.75700 -23.03075 -22.34828 -21.26603 -20.97402 -19.03225 -17.70996 -17.52151 -17.04298 -16.31404 -16.09116 -15.88040 -15.56085 -14.74881 -14.72614 -14.47322 -14.20021 -14.11451 -13.87757 -13.61220 -13.33506 -13.12609 -12.92007 -12.80600 -12.66010 -12.49325 -12.17948 -12.06714 -11.93800 -11.92203 -11.75266 -11.43620 -11.30741 -11.22309 -11.19013 -10.92112 -10.81350 -10.50793 -10.13128 -9.78813 -9.57591 -9.34458 -9.10130 -8.87518 -8.75093 -7.20970 -5.74901 -3.10106 0.68871 0.78325 1.68395 2.50473 2.84416 3.16788 3.38462 3.41515 3.45977 4.07178 4.31840 4.40279 4.51510 4.60934 4.62081 4.64577 4.80853 4.86717 4.91283 4.96210 5.04037 5.11163 5.18363 5.27653 5.31353 5.33791 5.45379 5.49463 5.49969 5.54080 5.59875 5.73805 5.76709 5.81960 5.84594 5.87720 5.92026 6.02991 6.10286 6.24838 6.33289 6.44235 6.75519 6.78251 7.25055 8.01584 8.06618 8.44357 9.23407 9.95945 10.16140 11.43591 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.001870 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.718246 B =14967.696808 C =15608.263631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 H 0.094 0.906 4 C -0.064 4.064 5 C -0.063 4.063 6 C -0.109 4.109 7 C -0.105 4.105 8 C -0.117 4.117 9 C -0.032 4.032 10 Cl -0.073 7.073 11 C -0.108 4.108 12 C 0.516 3.484 13 O -0.533 6.533 14 N -0.615 5.615 15 C 0.070 3.930 16 C 0.117 3.883 17 C -0.142 4.142 18 C 0.160 3.840 19 N -0.757 5.757 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.278 1.278 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.028 0.972 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 20.056 29.688 35.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 H 0.112 0.888 4 C -0.102 4.102 5 C -0.063 4.063 6 C -0.127 4.127 7 C -0.123 4.123 8 C -0.136 4.136 9 C -0.059 4.059 10 Cl -0.044 7.044 11 C -0.127 4.127 12 C 0.303 3.697 13 O -0.409 6.409 14 N -0.348 5.348 15 C -0.073 4.073 16 C -0.005 4.005 17 C -0.181 4.181 18 C 0.032 3.968 19 N -0.402 5.402 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.583 5.583 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.193 0.807 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.692 19.466 29.575 35.598 hybrid contribution -1.224 0.267 0.485 1.343 sum 2.468 19.733 30.060 36.043 Atomic orbital electron populations 1.21922 0.92508 1.03307 1.02888 1.21261 0.98008 1.00639 0.92523 0.88770 1.20469 1.02293 0.98471 0.88956 1.19849 0.94075 0.95778 0.96645 1.21256 0.96167 0.99852 0.95452 1.21141 0.99626 0.95327 0.96247 1.21066 0.92922 0.98949 1.00619 1.20927 0.93248 0.94558 0.97147 1.98381 1.65844 1.53740 1.86482 1.20985 1.00648 0.95845 0.95231 1.20571 0.78352 0.86349 0.84396 1.90727 1.44823 1.19450 1.85927 1.47884 1.65334 1.14513 1.07063 1.21967 0.99538 0.82051 1.03765 1.21493 0.97697 0.96296 0.85047 1.22107 0.97863 0.99567 0.98589 1.20524 0.90916 0.93820 0.91509 1.42700 1.07087 1.59553 1.30864 1.19085 0.97381 1.21218 0.99652 0.89175 1.24685 0.97608 0.99597 0.97427 1.69708 1.30305 1.36003 1.22251 0.86521 0.85473 0.77221 0.79186 1.21111 1.21686 1.20386 0.91169 0.91527 0.91590 0.89999 0.89365 0.85157 0.85008 0.85080 0.84940 0.92548 0.90438 0.90759 0.90336 0.89526 0.91737 0.92076 0.95494 0.95378 0.80739 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.09 37.16 0.30 -0.77 16 2 C -0.10 -0.84 1.88 -91.77 -0.17 -1.02 16 3 H 0.09 0.62 7.44 -51.93 -0.39 0.24 16 4 C -0.06 -0.53 4.15 -27.88 -0.12 -0.65 16 5 C -0.06 -0.46 4.72 -104.63 -0.49 -0.95 16 6 C -0.11 -0.70 8.19 -39.58 -0.32 -1.03 16 7 C -0.11 -0.61 10.05 -39.59 -0.40 -1.01 16 8 C -0.12 -0.75 9.83 -39.55 -0.39 -1.14 16 9 C -0.03 -0.24 6.32 -39.50 -0.25 -0.49 16 10 Cl -0.07 -0.54 28.96 -51.86 -1.50 -2.04 16 11 C -0.11 -0.80 9.49 -39.55 -0.38 -1.17 16 12 C 0.52 6.18 6.88 -10.99 -0.08 6.11 16 13 O -0.53 -8.59 15.64 5.56 0.09 -8.51 16 14 N -0.61 -6.71 2.87 -181.57 -0.52 -7.23 16 15 C 0.07 0.50 9.76 59.85 0.58 1.09 16 16 C 0.12 1.50 5.41 -4.04 -0.02 1.48 16 17 C -0.14 -2.23 5.65 -26.73 -0.15 -2.38 16 18 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 19 N -0.76 -18.70 5.41 -59.90 -0.32 -19.02 16 20 C -0.24 -7.11 10.47 -15.06 -0.16 -7.27 16 21 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 23 N -0.93 -29.88 13.97 55.49 0.78 -29.10 16 24 Si 0.89 22.57 27.74 -169.99 -4.71 17.85 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 27 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 28 H 0.07 0.42 6.85 -51.93 -0.36 0.06 16 29 H 0.07 0.48 6.07 -51.93 -0.32 0.16 16 30 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.09 0.81 8.02 -51.93 -0.42 0.40 16 33 H 0.13 0.70 8.04 -52.48 -0.42 0.28 16 34 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.54 8.03 -51.93 -0.42 0.12 16 39 H 0.07 0.43 4.78 -51.93 -0.25 0.18 16 40 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 41 H 0.09 1.24 7.37 -51.93 -0.38 0.86 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.36 8.68 5.53 -40.82 -0.23 8.46 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -34.92 395.64 -9.80 -44.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.40 Total: 3.45 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.16 Total: -6.08 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: -0.07 Total: -55.36 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.85 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.92 -9.80 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723223933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.522 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds