Wall clock time and date at job start Tue Mar 31 2020 20:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47006 * 119.99754 * 2 1 3 5 5 C 1.50700 * 109.47473 * 295.00228 * 4 2 1 6 6 C 1.38256 * 119.99626 * 89.99693 * 5 4 2 7 7 C 1.38219 * 120.03190 * 180.02562 * 6 5 4 8 8 C 1.38239 * 120.00768 * 0.25303 * 7 6 5 9 9 C 1.38332 * 119.98664 * 359.47554 * 8 7 6 10 10 Cl 1.73606 * 120.01060 * 180.29314 * 9 8 7 11 11 C 1.38199 * 119.99263 * 269.97893 * 5 4 2 12 12 C 1.50692 * 109.47354 * 239.99884 * 2 1 3 13 13 O 1.21282 * 120.00193 * 254.50218 * 12 2 1 14 14 N 1.34779 * 120.00019 * 74.50159 * 12 2 1 15 15 C 1.46500 * 119.99745 * 3.82165 * 14 12 2 16 16 C 1.46495 * 120.00207 * 183.81968 * 14 12 2 17 17 C 1.53003 * 109.46965 * 90.00299 * 16 14 12 18 18 C 1.53003 * 109.47054 * 179.97438 * 17 16 14 19 19 N 1.46502 * 109.47098 * 179.97438 * 18 17 16 20 20 C 1.36937 * 119.99566 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00746 * 359.97438 * 20 19 18 22 22 C 1.38822 * 119.99439 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99444 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00011 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46854 * 90.00586 * 24 22 20 26 26 H 1.48499 * 109.47021 * 210.00325 * 24 22 20 27 27 H 1.48501 * 109.47527 * 330.00048 * 24 22 20 28 28 H 1.09002 * 109.47113 * 308.54688 * 1 2 3 29 29 H 1.08997 * 109.47111 * 68.54945 * 1 2 3 30 30 H 1.08994 * 109.46946 * 188.54982 * 1 2 3 31 31 H 1.09007 * 109.47074 * 175.00031 * 4 2 1 32 32 H 1.09004 * 109.47311 * 55.00218 * 4 2 1 33 33 H 1.08004 * 119.98548 * 359.97438 * 6 5 4 34 34 H 1.07997 * 119.99624 * 179.97438 * 7 6 5 35 35 H 1.08003 * 120.00598 * 179.73886 * 8 7 6 36 36 H 1.08001 * 120.00486 * 359.97438 * 11 5 4 37 37 H 1.09005 * 109.47157 * 84.79134 * 15 14 12 38 38 H 1.09005 * 109.47406 * 204.78205 * 15 14 12 39 39 H 1.08994 * 109.47495 * 324.78683 * 15 14 12 40 40 H 1.09007 * 109.47395 * 210.00152 * 16 14 12 41 41 H 1.08996 * 109.47144 * 330.00332 * 16 14 12 42 42 H 1.09001 * 109.46735 * 299.99716 * 17 16 14 43 43 H 1.08996 * 109.47163 * 60.00045 * 17 16 14 44 44 H 1.08999 * 109.47425 * 300.00237 * 18 17 16 45 45 H 1.09010 * 109.46997 * 59.99877 * 18 17 16 46 46 H 0.96999 * 119.99683 * 359.97438 * 19 18 17 47 47 H 0.97001 * 119.99089 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0571 2.4766 6 6 0.4353 -0.2051 3.0998 7 6 0.0687 0.5087 4.2252 8 6 0.9055 1.4888 4.7253 9 6 2.1148 1.7476 4.1056 10 17 3.1696 2.9731 4.7377 11 6 2.4815 1.0324 2.9793 12 6 2.0324 -0.7104 -1.2304 13 8 2.4992 -1.8260 -1.1384 14 7 1.9630 -0.1060 -2.4330 15 6 1.4772 1.2725 -2.5331 16 6 2.3734 -0.8274 -3.6402 17 6 1.1688 -1.5656 -4.2275 18 6 1.5973 -2.3186 -5.4886 19 7 0.4439 -3.0259 -6.0506 20 6 0.5875 -3.7734 -7.1889 21 1 1.5506 -3.8413 -7.6726 22 6 -0.5055 -4.4432 -7.7217 23 7 -0.3677 -5.1613 -8.8161 24 14 -2.1717 -4.3252 -6.8855 25 1 -2.9232 -3.1707 -7.4402 26 1 -2.9361 -5.5753 -7.1266 27 1 -1.9804 -4.1359 -5.4251 28 1 -0.3633 0.6404 0.8037 29 1 -0.3633 0.3758 -0.9565 30 1 -0.3633 -1.0162 0.1528 31 1 3.1264 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2952 33 1 -0.2210 -0.9673 2.7065 34 1 -0.8737 0.3037 4.7112 35 1 0.6170 2.0493 5.6023 36 1 3.4239 1.2366 2.4929 37 1 2.3004 1.9623 -2.3470 38 1 1.0774 1.4453 -3.5324 39 1 0.6924 1.4357 -1.7946 40 1 2.7584 -0.1189 -4.3737 41 1 3.1520 -1.5468 -3.3865 42 1 0.7839 -2.2741 -3.4940 43 1 0.3902 -0.8462 -4.4812 44 1 1.9820 -1.6098 -6.2219 45 1 2.3761 -3.0379 -5.2353 46 1 -0.4211 -2.9652 -5.6159 47 1 -1.1314 -5.6296 -9.1882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723223933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:42 Heat of formation + Delta-G solvation = -36.553195 kcal Electronic energy + Delta-G solvation = -26143.533486 eV Core-core repulsion = 22351.173711 eV Total energy + Delta-G solvation = -3792.359775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38222 -40.26910 -37.76142 -37.47366 -36.49420 -35.95273 -34.11305 -32.45683 -31.79058 -31.33183 -28.12966 -27.71988 -27.11076 -24.95581 -23.76960 -23.40399 -22.68157 -21.82936 -19.88950 -19.65452 -18.40883 -17.64166 -17.27054 -16.73301 -16.54766 -16.44921 -16.34972 -15.91749 -15.74657 -15.20246 -14.90025 -14.79475 -14.66785 -14.42689 -14.09907 -13.80958 -13.71302 -13.61513 -13.58795 -13.16290 -13.09110 -12.82610 -12.77828 -12.53604 -12.47518 -12.44539 -12.27522 -12.07732 -11.99019 -11.93951 -11.84211 -11.80276 -11.74457 -11.00146 -10.71059 -9.85369 -9.66909 -9.60796 -9.33969 -8.05615 -5.39984 0.18875 0.29844 1.16722 1.35239 1.39636 1.47061 1.60267 2.01880 2.46131 2.66111 3.25164 3.38861 3.59865 3.77862 3.82345 3.94558 4.00927 4.06982 4.17668 4.20509 4.31556 4.32432 4.37683 4.40713 4.44724 4.58462 4.61064 4.67670 4.73131 4.78365 4.80105 4.89394 4.92166 4.96691 4.99705 5.13832 5.24025 5.26127 5.27389 5.30490 5.40466 5.55364 5.58518 5.72058 5.86209 6.18355 6.40403 7.04150 7.17199 7.79991 7.99639 9.15789 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022932 B = 0.001870 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.718246 B =14967.696808 C =15608.263631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.116 0.884 4 C -0.059 4.059 5 C -0.067 4.067 6 C -0.113 4.113 7 C -0.103 4.103 8 C -0.120 4.120 9 C -0.044 4.044 10 Cl -0.078 7.078 11 C -0.116 4.116 12 C 0.508 3.492 13 O -0.584 6.584 14 N -0.613 5.613 15 C 0.062 3.938 16 C 0.123 3.877 17 C -0.124 4.124 18 C 0.156 3.844 19 N -0.760 5.760 20 C -0.241 4.241 21 H 0.056 0.944 22 C -0.066 4.066 23 N -0.982 5.982 24 Si 0.960 3.040 25 H -0.271 1.271 26 H -0.294 1.294 27 H -0.257 1.257 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.037 0.963 45 H 0.015 0.985 46 H 0.365 0.635 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 22.573 31.799 39.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.134 0.866 4 C -0.097 4.097 5 C -0.067 4.067 6 C -0.131 4.131 7 C -0.121 4.121 8 C -0.138 4.138 9 C -0.070 4.070 10 Cl -0.049 7.049 11 C -0.135 4.135 12 C 0.298 3.702 13 O -0.464 6.464 14 N -0.345 5.345 15 C -0.079 4.079 16 C -0.001 4.001 17 C -0.163 4.163 18 C 0.029 3.971 19 N -0.406 5.406 20 C -0.372 4.372 21 H 0.074 0.926 22 C -0.257 4.257 23 N -0.633 5.633 24 Si 0.787 3.213 25 H -0.197 1.197 26 H -0.220 1.220 27 H -0.182 1.182 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.199 0.801 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.855 22.054 31.717 38.676 hybrid contribution -0.536 -0.507 -0.188 0.761 sum 1.320 21.547 31.529 38.211 Atomic orbital electron populations 1.21913 0.91353 1.03105 1.03838 1.21253 0.98718 1.01044 0.90369 0.86562 1.20350 1.01453 0.98053 0.89813 1.19723 0.94637 0.95913 0.96455 1.21430 0.95942 1.00040 0.95648 1.21414 1.00321 0.94544 0.95782 1.21317 0.92531 0.99064 1.00914 1.21051 0.93730 0.94781 0.97451 1.98377 1.66098 1.53931 1.86515 1.21041 1.00855 0.96069 0.95511 1.21297 0.77451 0.85876 0.85620 1.90704 1.47145 1.21831 1.86742 1.47977 1.64747 1.15760 1.06020 1.22258 1.00814 0.79903 1.04928 1.21306 0.95795 0.96582 0.86406 1.21911 0.99373 0.99127 0.95899 1.20694 0.89240 0.93680 0.93463 1.42724 1.08730 1.59414 1.29733 1.19071 0.96077 1.21347 1.00704 0.92594 1.25581 1.02201 0.99574 0.98361 1.69895 1.31636 1.37459 1.24270 0.85335 0.79651 0.77277 0.79063 1.19716 1.22025 1.18163 0.89386 0.91027 0.92708 0.91188 0.90813 0.84235 0.82681 0.83700 0.84764 0.90625 0.89646 0.89042 0.87792 0.91685 0.93701 0.90442 0.94476 0.96663 0.80150 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.09 71.98 0.58 -1.15 16 2 C -0.09 -1.37 1.88 -11.54 -0.02 -1.39 16 3 H 0.12 1.21 7.44 -2.39 -0.02 1.19 16 4 C -0.06 -0.95 4.15 29.85 0.12 -0.82 16 5 C -0.07 -0.88 4.72 -19.87 -0.09 -0.97 16 6 C -0.11 -1.22 8.19 22.27 0.18 -1.04 16 7 C -0.10 -0.92 10.05 22.27 0.22 -0.69 16 8 C -0.12 -1.26 9.83 22.29 0.22 -1.04 16 9 C -0.04 -0.58 6.32 22.32 0.14 -0.44 16 10 Cl -0.08 -1.06 28.96 -2.72 -0.08 -1.13 16 11 C -0.12 -1.56 9.49 22.29 0.21 -1.35 16 12 C 0.51 11.76 6.88 87.65 0.60 12.36 16 13 O -0.58 -19.27 15.64 -3.04 -0.05 -19.32 16 14 N -0.61 -12.21 2.87 -846.76 -2.43 -14.64 16 15 C 0.06 0.68 9.76 127.77 1.25 1.93 16 16 C 0.12 2.97 5.41 86.38 0.47 3.44 16 17 C -0.12 -3.72 5.65 30.60 0.17 -3.55 16 18 C 0.16 6.10 6.26 86.38 0.54 6.64 16 19 N -0.76 -37.13 5.41 -343.43 -1.86 -38.99 16 20 C -0.24 -14.30 10.47 84.04 0.88 -13.42 16 21 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 23 N -0.98 -64.13 13.97 21.65 0.30 -63.83 16 24 Si 0.96 46.32 27.74 68.60 1.90 48.23 16 25 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 28 H 0.09 0.76 6.85 -2.39 -0.02 0.75 16 29 H 0.07 0.80 6.07 -2.39 -0.01 0.78 16 30 H 0.05 0.79 8.12 -2.39 -0.02 0.78 16 31 H 0.07 1.27 8.08 -2.38 -0.02 1.25 16 32 H 0.07 1.39 8.02 -2.39 -0.02 1.37 16 33 H 0.14 1.22 8.04 -2.91 -0.02 1.20 16 34 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 35 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.08 0.84 8.03 -2.38 -0.02 0.83 16 39 H 0.09 0.70 4.78 -2.39 -0.01 0.69 16 40 H 0.10 2.00 8.07 -2.38 -0.02 1.98 16 41 H 0.06 1.88 7.37 -2.39 -0.02 1.86 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.37 16.95 5.53 -92.71 -0.51 16.43 16 47 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -77.52 395.64 4.13 -73.40 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.39 Total: 21.30 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.95 Total: -5.00 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -3.99 Total: -117.46 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.23 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.13 kcal Total: -77.52 4.13 -73.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723223933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.842 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds