Wall clock time and date at job start Tue Mar 31 2020 20:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 N 1.46499 * 109.47302 * 120.00219 * 2 1 3 5 5 C 1.36939 * 119.99999 * 275.00246 * 4 2 1 6 6 H 1.08001 * 120.00034 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00236 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46984 * 59.99796 * 9 7 5 11 11 H 1.48498 * 109.47244 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47148 * 299.99884 * 9 7 5 13 13 C 1.53002 * 109.47025 * 240.00129 * 2 1 3 14 14 H 1.09000 * 110.88398 * 296.12048 * 13 2 1 15 15 C 1.55552 * 110.99828 * 172.21286 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34776 * 125.65214 * 181.01647 * 17 16 15 19 19 O 1.21272 * 120.00571 * 179.97438 * 18 17 16 20 20 C 1.50703 * 119.99593 * 359.97438 * 18 17 16 21 21 C 1.50704 * 109.47349 * 179.97438 * 20 18 17 22 22 C 1.38254 * 119.96306 * 269.72907 * 21 20 18 23 23 C 1.38217 * 120.06830 * 179.76537 * 22 21 20 24 24 C 1.38410 * 119.99755 * 0.50603 * 23 22 21 25 25 F 1.35102 * 120.03214 * 179.72495 * 24 23 22 26 26 C 1.38651 * 119.93032 * 359.74302 * 24 23 22 27 27 F 1.35104 * 120.03261 * 180.02562 * 26 24 23 28 28 C 1.38210 * 119.96379 * 89.99931 * 21 20 18 29 29 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 30 30 H 1.08997 * 109.47278 * 59.99576 * 1 2 3 31 31 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46682 * 299.99732 * 1 2 3 33 33 H 0.96995 * 120.00417 * 94.99679 * 4 2 1 34 34 H 0.97001 * 120.00682 * 180.02562 * 8 7 5 35 35 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 36 36 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 37 37 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 38 38 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 39 39 H 1.09002 * 109.47359 * 300.00083 * 20 18 17 40 40 H 1.09002 * 109.47095 * 59.99817 * 20 18 17 41 41 H 1.07999 * 119.96445 * 0.02562 * 22 21 20 42 42 H 1.07999 * 120.00054 * 180.25415 * 23 22 21 43 43 H 1.08007 * 120.00004 * 359.95640 * 28 21 20 44 44 H 1.08997 * 110.36526 * 94.70985 * 29 17 16 45 45 H 1.08995 * 110.36492 * 217.03407 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6124 -0.6618 3.5090 8 7 2.9255 -1.9388 3.4499 9 14 2.7914 0.2702 5.1180 10 1 1.4692 0.8069 5.5289 11 1 3.3003 -0.6483 6.1680 12 1 3.7465 1.3927 4.9362 13 6 2.0400 -0.7212 -1.2493 14 1 1.7468 -1.7710 -1.2388 15 6 3.5823 -0.5738 -1.3874 16 6 3.8030 -0.7124 -2.9085 17 7 2.5326 -0.3795 -3.5693 18 6 2.3091 -0.4010 -4.8983 19 8 1.2166 -0.1064 -5.3344 20 6 3.4171 -0.7913 -5.8424 21 6 2.9112 -0.7359 -7.2609 22 6 2.3456 -1.8584 -7.8366 23 6 1.8765 -1.8086 -9.1358 24 6 1.9823 -0.6371 -9.8653 25 9 1.5291 -0.5893 -11.1372 26 6 2.5543 0.4871 -9.2896 27 9 2.6582 1.6318 -9.9996 28 6 3.0183 0.4354 -7.9867 29 6 1.5433 -0.0188 -2.5375 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2491 -1.6318 1.1526 34 1 3.2489 -2.3962 4.2418 35 1 4.0975 -1.3691 -0.8489 36 1 3.9100 0.4052 -1.0379 37 1 4.0892 -1.7362 -3.1498 38 1 4.5821 -0.0233 -3.2344 39 1 4.2528 -0.1011 -5.7270 40 1 3.7485 -1.8044 -5.6145 41 1 2.2663 -2.7739 -7.2692 42 1 1.4311 -2.6849 -9.5831 43 1 3.4637 1.3106 -7.5370 44 1 1.5199 1.0616 -2.3956 45 1 0.5555 -0.3875 -2.8138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724545047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:06 Heat of formation + Delta-G solvation = -92.549301 kcal Electronic energy + Delta-G solvation = -28318.153070 eV Core-core repulsion = 23971.568441 eV Total energy + Delta-G solvation = -4346.584629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.75359 -48.83075 -40.44695 -39.23529 -37.72333 -35.25810 -33.10742 -32.38943 -31.18592 -30.59241 -29.40218 -28.14221 -27.06398 -24.54517 -23.65709 -23.23412 -22.14335 -21.48147 -19.68237 -19.36630 -18.23133 -17.55847 -17.44079 -17.28770 -16.96886 -16.56261 -16.32917 -15.42780 -15.24244 -15.09626 -14.80910 -14.60706 -14.29579 -14.25723 -13.89485 -13.51899 -13.47961 -13.16482 -12.83808 -12.69922 -12.57198 -12.38698 -12.27235 -12.14053 -12.04508 -11.79031 -11.63125 -11.27023 -10.90870 -10.76939 -10.63044 -10.44141 -10.27148 -10.06634 -9.89855 -9.67774 -9.42757 -8.97566 -8.94808 -8.69108 -7.01001 -5.81059 -3.09609 0.52092 0.64187 2.48997 2.74260 3.13362 3.40582 3.43894 3.45842 3.46091 3.96278 4.09418 4.19445 4.37564 4.54709 4.58467 4.68724 4.72276 4.84590 4.92391 5.05138 5.08495 5.25395 5.33104 5.41504 5.44892 5.49660 5.51886 5.61836 5.62658 5.82379 5.84665 5.92159 5.94159 6.01208 6.15403 6.17084 6.31373 6.37082 6.40918 6.51734 6.59712 6.83113 7.05595 7.43838 7.65859 8.03251 8.37484 9.48933 10.05685 10.40602 11.41412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.001833 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.482740 B =15268.825266 C =15314.776497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.237 4.237 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.117 4.117 16 C 0.096 3.904 17 N -0.616 5.616 18 C 0.527 3.473 19 O -0.537 6.537 20 C -0.100 4.100 21 C -0.044 4.044 22 C -0.085 4.085 23 C -0.123 4.123 24 C 0.064 3.936 25 F -0.131 7.131 26 C 0.069 3.931 27 F -0.129 7.129 28 C -0.111 4.111 29 C 0.114 3.886 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.383 0.617 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.069 0.931 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -0.079 -24.220 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.213 1.213 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.155 4.155 16 C -0.027 4.027 17 N -0.350 5.350 18 C 0.315 3.685 19 O -0.414 6.414 20 C -0.140 4.140 21 C -0.044 4.044 22 C -0.103 4.103 23 C -0.142 4.142 24 C 0.044 3.956 25 F -0.109 7.109 26 C 0.049 3.951 27 F -0.108 7.108 28 C -0.130 4.130 29 C -0.008 4.008 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.158 0.842 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.765 0.247 -24.464 24.621 hybrid contribution 0.102 0.375 0.674 0.778 sum 2.867 0.622 -23.790 23.970 Atomic orbital electron populations 1.22504 0.99265 1.00982 1.00106 1.20128 0.91791 0.95144 0.85441 0.93299 1.42358 1.78180 1.10631 1.05120 1.19167 1.36497 0.93830 0.87322 0.91291 1.24718 1.02219 0.95966 0.98001 1.69640 1.50911 1.08626 1.28987 0.86295 0.77781 0.78601 0.83662 1.21329 1.21752 1.21309 1.22735 0.94862 1.00546 0.94045 0.90042 1.22656 0.96666 1.04027 0.92116 1.22208 0.85625 1.00303 0.94591 1.48594 1.14050 1.67261 1.05105 1.20006 0.89226 0.77995 0.81255 1.90742 1.25484 1.48954 1.76235 1.20685 0.98000 1.05302 0.89999 1.19201 0.97867 0.92851 0.94529 1.20961 0.96492 0.98869 0.93993 1.21047 1.01445 0.96736 0.94922 1.17701 1.02189 0.94757 0.80949 1.91527 1.86862 1.96946 1.35578 1.17595 1.03906 0.82115 0.91479 1.91534 1.94229 1.47164 1.77871 1.20913 1.00978 0.99423 0.91705 1.22331 0.92456 0.99734 0.86324 0.94367 0.93448 0.92717 0.78303 0.93493 0.89360 0.90250 0.91416 0.91509 0.87396 0.87188 0.84186 0.83536 0.83747 0.91267 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 9.27 37.16 0.34 -2.54 16 2 C 0.19 3.32 2.43 -67.93 -0.16 3.16 16 3 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 4 N -0.72 -16.60 4.97 -53.42 -0.27 -16.86 16 5 C -0.24 -6.21 9.93 -15.06 -0.15 -6.36 16 6 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 9 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C -0.10 -1.46 2.66 -88.25 -0.23 -1.70 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.12 -1.49 6.31 -24.68 -0.16 -1.64 16 16 C 0.10 0.91 6.47 -3.07 -0.02 0.89 16 17 N -0.62 -7.12 3.33 -170.52 -0.57 -7.68 16 18 C 0.53 6.15 7.84 -10.98 -0.09 6.07 16 19 O -0.54 -8.40 16.29 5.56 0.09 -8.31 16 20 C -0.10 -0.74 5.02 -29.03 -0.15 -0.88 16 21 C -0.04 -0.37 4.37 -104.62 -0.46 -0.83 16 22 C -0.08 -0.66 9.69 -39.58 -0.38 -1.04 16 23 C -0.12 -0.98 10.02 -39.53 -0.40 -1.38 16 24 C 0.06 0.64 7.31 -39.37 -0.29 0.36 16 25 F -0.13 -1.43 17.18 2.25 0.04 -1.39 16 26 C 0.07 0.72 7.31 -39.37 -0.29 0.43 16 27 F -0.13 -1.48 17.18 2.25 0.04 -1.44 16 28 C -0.11 -1.02 9.68 -39.53 -0.38 -1.40 16 29 C 0.11 1.50 5.27 -2.53 -0.01 1.49 16 30 H 0.04 0.56 7.23 -51.93 -0.38 0.18 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.38 9.40 7.80 -40.82 -0.32 9.09 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.08 1.07 8.00 -51.93 -0.42 0.66 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.11 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 44 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 45 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -31.76 384.34 -8.64 -40.40 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.55 Total: 4.92 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -2.92 Total: -5.82 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.11 Total: -50.79 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.76 -8.64 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724545047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.154 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds