Wall clock time and date at job start Tue Mar 31 2020 20:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 N 1.46499 * 109.47302 * 120.00219 * 2 1 3 5 5 C 1.36939 * 119.99999 * 275.00246 * 4 2 1 6 6 H 1.08001 * 120.00034 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00189 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99992 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00236 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46984 * 59.99796 * 9 7 5 11 11 H 1.48498 * 109.47244 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47148 * 299.99884 * 9 7 5 13 13 C 1.53002 * 109.47025 * 240.00129 * 2 1 3 14 14 H 1.09000 * 110.88398 * 296.12048 * 13 2 1 15 15 C 1.55552 * 110.99828 * 172.21286 * 13 2 1 16 16 C 1.54325 * 102.75696 * 206.38810 * 15 13 2 17 17 N 1.47018 * 107.40412 * 22.23822 * 16 15 13 18 18 C 1.34776 * 125.65214 * 181.01647 * 17 16 15 19 19 O 1.21272 * 120.00571 * 179.97438 * 18 17 16 20 20 C 1.50703 * 119.99593 * 359.97438 * 18 17 16 21 21 C 1.50704 * 109.47349 * 179.97438 * 20 18 17 22 22 C 1.38254 * 119.96306 * 269.72907 * 21 20 18 23 23 C 1.38217 * 120.06830 * 179.76537 * 22 21 20 24 24 C 1.38410 * 119.99755 * 0.50603 * 23 22 21 25 25 F 1.35102 * 120.03214 * 179.72495 * 24 23 22 26 26 C 1.38651 * 119.93032 * 359.74302 * 24 23 22 27 27 F 1.35104 * 120.03261 * 180.02562 * 26 24 23 28 28 C 1.38210 * 119.96379 * 89.99931 * 21 20 18 29 29 C 1.47430 * 108.70532 * 0.98338 * 17 16 15 30 30 H 1.08997 * 109.47278 * 59.99576 * 1 2 3 31 31 H 1.09000 * 109.46912 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46682 * 299.99732 * 1 2 3 33 33 H 0.96995 * 120.00417 * 94.99679 * 4 2 1 34 34 H 0.97001 * 120.00682 * 180.02562 * 8 7 5 35 35 H 1.08993 * 110.83076 * 88.07022 * 15 13 2 36 36 H 1.09000 * 110.77660 * 324.67587 * 15 13 2 37 37 H 1.09002 * 109.88192 * 262.74262 * 16 15 13 38 38 H 1.09000 * 109.88128 * 141.73114 * 16 15 13 39 39 H 1.09002 * 109.47359 * 300.00083 * 20 18 17 40 40 H 1.09002 * 109.47095 * 59.99817 * 20 18 17 41 41 H 1.07999 * 119.96445 * 0.02562 * 22 21 20 42 42 H 1.07999 * 120.00054 * 180.25415 * 23 22 21 43 43 H 1.08007 * 120.00004 * 359.95640 * 28 21 20 44 44 H 1.08997 * 110.36526 * 94.70985 * 29 17 16 45 45 H 1.08995 * 110.36492 * 217.03407 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0404 2.4242 7 6 2.6124 -0.6618 3.5090 8 7 2.9255 -1.9388 3.4499 9 14 2.7914 0.2702 5.1180 10 1 1.4692 0.8069 5.5289 11 1 3.3003 -0.6483 6.1680 12 1 3.7465 1.3927 4.9362 13 6 2.0400 -0.7212 -1.2493 14 1 1.7468 -1.7710 -1.2388 15 6 3.5823 -0.5738 -1.3874 16 6 3.8030 -0.7124 -2.9085 17 7 2.5326 -0.3795 -3.5693 18 6 2.3091 -0.4010 -4.8983 19 8 1.2166 -0.1064 -5.3344 20 6 3.4171 -0.7913 -5.8424 21 6 2.9112 -0.7359 -7.2609 22 6 2.3456 -1.8584 -7.8366 23 6 1.8765 -1.8086 -9.1358 24 6 1.9823 -0.6371 -9.8653 25 9 1.5291 -0.5893 -11.1372 26 6 2.5543 0.4871 -9.2896 27 9 2.6582 1.6318 -9.9996 28 6 3.0183 0.4354 -7.9867 29 6 1.5433 -0.0188 -2.5375 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2491 -1.6318 1.1526 34 1 3.2489 -2.3962 4.2418 35 1 4.0975 -1.3691 -0.8489 36 1 3.9100 0.4052 -1.0379 37 1 4.0892 -1.7362 -3.1498 38 1 4.5821 -0.0233 -3.2344 39 1 4.2528 -0.1011 -5.7270 40 1 3.7485 -1.8044 -5.6145 41 1 2.2663 -2.7739 -7.2692 42 1 1.4311 -2.6849 -9.5831 43 1 3.4637 1.3106 -7.5370 44 1 1.5199 1.0616 -2.3956 45 1 0.5555 -0.3875 -2.8138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724545047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:05 Heat of formation + Delta-G solvation = -110.338343 kcal Electronic energy + Delta-G solvation = -28318.924461 eV Core-core repulsion = 23971.568441 eV Total energy + Delta-G solvation = -4347.356020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.53307 -49.61999 -41.30758 -40.01478 -38.79379 -36.73246 -34.29429 -33.62230 -31.91758 -31.73981 -30.77646 -29.23694 -28.03170 -26.15073 -24.55939 -24.24875 -22.88546 -22.72991 -21.04592 -20.21240 -19.13159 -18.95154 -18.25430 -18.13244 -17.94676 -17.41732 -17.34710 -16.53624 -16.28436 -16.04957 -15.74574 -15.54630 -15.49244 -15.12296 -14.98696 -14.85779 -14.59907 -14.18066 -14.00154 -13.87048 -13.73946 -13.39979 -13.19543 -13.04946 -12.90022 -12.84054 -12.74783 -12.73007 -12.28474 -12.26021 -12.20829 -11.90957 -11.60633 -11.52654 -11.34451 -10.97752 -10.87226 -10.07403 -9.67221 -9.60941 -8.95136 -7.89145 -5.15744 -0.16104 0.00886 1.50456 1.51798 1.57616 1.64971 1.94234 2.42649 2.59878 2.77553 3.26916 3.42901 3.45931 3.49672 3.61543 3.74397 3.85177 3.93578 4.01228 4.10696 4.28089 4.35148 4.40396 4.45179 4.55711 4.59863 4.65150 4.72467 4.75658 4.81441 4.86391 4.90492 4.95217 5.02040 5.02490 5.09626 5.21370 5.27212 5.33393 5.38523 5.42614 5.56947 5.63101 5.72745 6.33232 6.58029 7.16486 7.40340 8.16769 8.40232 9.33771 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033506 B = 0.001833 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.482740 B =15268.825266 C =15314.776497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 H 0.046 0.954 4 N -0.730 5.730 5 C -0.232 4.232 6 H 0.072 0.928 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.964 3.036 10 H -0.284 1.284 11 H -0.298 1.298 12 H -0.278 1.278 13 C -0.094 4.094 14 H 0.075 0.925 15 C -0.116 4.116 16 C 0.103 3.897 17 N -0.616 5.616 18 C 0.525 3.475 19 O -0.583 6.583 20 C -0.091 4.091 21 C -0.050 4.050 22 C -0.083 4.083 23 C -0.120 4.120 24 C 0.044 3.956 25 F -0.142 7.142 26 C 0.045 3.955 27 F -0.143 7.143 28 C -0.116 4.116 29 C 0.120 3.880 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.156 0.844 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -0.329 -24.936 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.073 3.927 3 H 0.064 0.936 4 N -0.370 5.370 5 C -0.364 4.364 6 H 0.090 0.910 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.210 1.210 11 H -0.225 1.225 12 H -0.204 1.204 13 C -0.114 4.114 14 H 0.094 0.906 15 C -0.154 4.154 16 C -0.019 4.019 17 N -0.350 5.350 18 C 0.315 3.685 19 O -0.464 6.464 20 C -0.130 4.130 21 C -0.051 4.051 22 C -0.101 4.101 23 C -0.139 4.139 24 C 0.024 3.976 25 F -0.121 7.121 26 C 0.025 3.975 27 F -0.122 7.122 28 C -0.134 4.134 29 C -0.003 4.003 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.206 0.794 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.153 0.847 40 H 0.160 0.840 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.174 0.826 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.830 0.028 -25.207 25.497 hybrid contribution -0.288 0.476 0.864 1.028 sum 3.542 0.504 -24.343 24.605 Atomic orbital electron populations 1.22380 0.98481 1.00735 1.00449 1.20307 0.92158 0.94934 0.85312 0.93636 1.42500 1.78303 1.10270 1.05900 1.19506 1.34455 0.94015 0.88392 0.91023 1.25419 1.03360 0.96823 1.01006 1.69781 1.52780 1.09957 1.29262 0.85345 0.77726 0.77431 0.80057 1.21026 1.22480 1.20448 1.22504 0.96330 0.99688 0.92857 0.90614 1.22592 0.94940 1.03034 0.94850 1.22281 0.85209 1.02755 0.91672 1.48641 1.14193 1.67068 1.05063 1.20746 0.89611 0.76816 0.81290 1.90732 1.27712 1.51039 1.76880 1.20764 0.96774 1.07828 0.87645 1.19445 0.97728 0.92712 0.95171 1.21343 0.95194 0.99693 0.93846 1.21350 1.00838 0.96640 0.95034 1.18025 1.03051 0.95639 0.80891 1.91491 1.87134 1.97061 1.36380 1.17901 1.05321 0.82013 0.92292 1.91489 1.94492 1.47895 1.78288 1.21124 1.00789 1.00342 0.91192 1.22099 0.92623 0.99345 0.86242 0.91649 0.93975 0.94674 0.79427 0.94213 0.90476 0.91246 0.88775 0.88643 0.84651 0.83950 0.81611 0.81301 0.82609 0.91438 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 9.27 71.98 0.67 -4.75 16 2 C 0.18 6.43 2.43 44.99 0.11 6.54 16 3 H 0.05 1.65 8.03 -2.39 -0.02 1.63 16 4 N -0.73 -33.69 4.97 -322.94 -1.61 -35.30 16 5 C -0.23 -12.14 9.93 84.03 0.83 -11.30 16 6 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 8 N -0.97 -56.60 13.06 21.65 0.28 -56.32 16 9 Si 0.96 44.71 29.55 68.60 2.03 46.74 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 13 C -0.09 -2.59 2.66 -9.26 -0.02 -2.61 16 14 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.12 -2.75 6.31 31.92 0.20 -2.54 16 16 C 0.10 1.56 6.47 86.73 0.56 2.12 16 17 N -0.62 -12.35 3.33 -811.80 -2.70 -15.05 16 18 C 0.52 10.63 7.84 87.66 0.69 11.32 16 19 O -0.58 -17.25 16.29 -3.00 -0.05 -17.30 16 20 C -0.09 -0.94 5.02 29.10 0.15 -0.79 16 21 C -0.05 -0.70 4.37 -19.87 -0.09 -0.79 16 22 C -0.08 -1.03 9.69 22.27 0.22 -0.82 16 23 C -0.12 -1.70 10.02 22.31 0.22 -1.47 16 24 C 0.04 0.86 7.31 22.41 0.16 1.03 16 25 F -0.14 -3.14 17.18 44.97 0.77 -2.37 16 26 C 0.04 0.92 7.31 22.41 0.16 1.09 16 27 F -0.14 -3.36 17.18 44.97 0.77 -2.58 16 28 C -0.12 -1.94 9.68 22.30 0.22 -1.72 16 29 C 0.12 2.97 5.27 86.85 0.46 3.43 16 30 H 0.06 1.83 7.23 -2.39 -0.02 1.81 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.37 18.57 7.80 -92.71 -0.72 17.85 16 34 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.78 8.00 -2.39 -0.02 1.76 16 37 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.14 0.72 8.09 -2.39 -0.02 0.70 16 40 H 0.14 0.61 8.08 -2.39 -0.02 0.59 16 41 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 45 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 Total: -1.00 -70.54 384.34 4.79 -65.75 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.29 Total: 21.30 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.00 Total: -4.88 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.02 Total: -106.66 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.05 Total: -17.30 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 1.55 Total: -4.95 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.54 4.79 -65.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724545047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.584 kcal (2) G-P(sol) polarization free energy of solvation -70.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds