Wall clock time and date at job start Tue Mar 31 2020 20:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.54329 * 59.82122 * 9 7 6 11 11 F 1.39907 * 109.47017 * 60.00094 * 10 9 7 12 12 F 1.39894 * 109.47223 * 179.97438 * 10 9 7 13 13 F 1.39900 * 109.47167 * 300.00204 * 10 9 7 14 14 C 1.53175 * 109.54460 * 299.55417 * 9 7 6 15 15 C 1.53089 * 109.16306 * 297.11613 * 14 9 7 16 16 O 1.42902 * 109.41411 * 302.38836 * 15 14 9 17 17 C 1.42901 * 114.09901 * 61.15940 * 16 15 14 18 18 C 1.53096 * 109.41565 * 298.84388 * 17 16 15 19 19 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 20 20 C 1.36939 * 120.00530 * 84.99153 * 19 2 1 21 21 H 1.07999 * 119.99437 * 0.02562 * 20 19 2 22 22 C 1.38808 * 120.00276 * 179.97438 * 20 19 2 23 23 N 1.31619 * 120.00333 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00092 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47575 * 89.99452 * 24 22 20 26 26 H 1.48499 * 109.46890 * 209.99907 * 24 22 20 27 27 H 1.48497 * 109.46723 * 329.99136 * 24 22 20 28 28 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 30 30 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 31 31 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 32 32 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 35 35 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.52201 * 57.02104 * 14 9 7 37 37 H 1.09003 * 109.52055 * 177.20661 * 14 9 7 38 38 H 1.09005 * 109.47573 * 182.40907 * 15 14 9 39 39 H 1.09001 * 109.49294 * 62.37700 * 15 14 9 40 40 H 1.09000 * 109.48672 * 178.86318 * 17 16 15 41 41 H 1.08997 * 109.48860 * 58.82999 * 17 16 15 42 42 H 1.08999 * 109.52150 * 297.70007 * 18 17 16 43 43 H 1.09000 * 109.52567 * 177.51441 * 18 17 16 44 44 H 0.97001 * 119.99762 * 264.99736 * 19 2 1 45 45 H 0.96993 * 120.00613 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 7 4.0533 -1.3044 2.5093 7 6 5.3743 -1.3407 2.7744 8 8 6.1586 -0.8015 2.0228 9 6 5.8767 -2.0512 4.0048 10 6 5.4684 -3.5246 3.9475 11 9 6.0226 -4.1182 2.8083 12 9 5.9359 -4.1829 5.0899 13 9 4.0738 -3.6202 3.8916 14 6 5.2762 -1.3994 5.2541 15 6 5.7540 0.0524 5.3424 16 8 7.1825 0.0815 5.3689 17 6 7.7991 -0.4719 4.2046 18 6 7.4033 -1.9448 4.0705 19 7 2.0183 -0.6904 -1.1962 20 6 2.1490 -0.0073 -2.3758 21 1 1.8924 1.0407 -2.4241 22 6 2.6122 -0.6614 -3.5091 23 7 2.7383 -0.0047 -4.6428 24 14 3.0567 -2.4738 -3.4253 25 1 1.8598 -3.2925 -3.7452 26 1 4.1325 -2.7655 -4.4066 27 1 3.5314 -2.8043 -2.0576 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.7517 -1.7716 1.2054 32 1 1.6054 -0.2618 2.1369 33 1 3.9995 -1.0727 0.4258 34 1 3.8532 0.4370 1.3572 35 1 3.4260 -1.7360 3.1103 36 1 4.1883 -1.4214 5.1893 37 1 5.6003 -1.9442 6.1407 38 1 5.3642 0.5086 6.2524 39 1 5.3952 0.6068 4.4753 40 1 8.8825 -0.3935 4.2948 41 1 7.4672 0.0754 3.3224 42 1 7.7704 -2.5006 4.9332 43 1 7.8368 -2.3569 3.1592 44 1 2.2491 -1.6316 -1.1527 45 1 3.0616 -0.4618 -5.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725002202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:39 Heat of formation + Delta-G solvation = -228.816533 kcal Electronic energy + Delta-G solvation = -31847.682188 eV Core-core repulsion = 27064.419344 eV Total energy + Delta-G solvation = -4783.262844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.59932 -48.09818 -47.99669 -41.11012 -38.60981 -36.86748 -34.93621 -34.63551 -32.32238 -31.57140 -29.91379 -28.62874 -27.78356 -24.52883 -24.21978 -23.60749 -22.93417 -21.90301 -20.47342 -19.76159 -18.83090 -18.76763 -18.58069 -17.60279 -17.05120 -16.34796 -16.25969 -15.68693 -15.49459 -15.17964 -15.04000 -14.86803 -14.74949 -14.44361 -14.24105 -14.17603 -14.14287 -14.06304 -13.92365 -13.67582 -13.08821 -12.87315 -12.76688 -12.56987 -12.42788 -12.23305 -12.00852 -11.84196 -11.43870 -11.28785 -11.11275 -10.98443 -10.82172 -10.71321 -10.48888 -10.23579 -10.02328 -9.75602 -9.59049 -9.16919 -8.94831 -7.29199 -5.77226 -3.13196 1.83960 2.47686 2.67789 3.23525 3.37755 3.38122 3.40323 3.46210 3.51676 3.61833 4.08621 4.10575 4.30775 4.42284 4.59030 4.74687 4.86203 4.96130 5.02232 5.05820 5.10947 5.24059 5.31252 5.39664 5.41502 5.54031 5.54661 5.56517 5.70603 5.87735 5.99046 6.13318 6.17457 6.25897 6.39724 6.41545 6.73260 6.80162 6.93357 7.20654 7.87060 7.98235 8.41605 9.19580 9.92216 10.10970 11.41159 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.003444 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.032589 B = 8129.138257 C = 8411.681184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.059 0.941 4 C -0.137 4.137 5 C 0.119 3.881 6 N -0.720 5.720 7 C 0.518 3.482 8 O -0.506 6.506 9 C -0.129 4.129 10 C 0.465 3.535 11 F -0.171 7.171 12 F -0.173 7.173 13 F -0.177 7.177 14 C -0.148 4.148 15 C 0.064 3.936 16 O -0.378 6.378 17 C 0.054 3.946 18 C -0.134 4.134 19 N -0.748 5.748 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.278 1.278 28 H 0.045 0.955 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 -4.856 25.763 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.071 3.929 3 H 0.077 0.923 4 C -0.176 4.176 5 C -0.003 4.003 6 N -0.372 5.372 7 C 0.300 3.700 8 O -0.381 6.381 9 C -0.134 4.134 10 C 0.411 3.589 11 F -0.152 7.152 12 F -0.154 7.154 13 F -0.158 7.158 14 C -0.186 4.186 15 C -0.013 4.013 16 O -0.297 6.297 17 C -0.022 4.022 18 C -0.172 4.172 19 N -0.392 5.392 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.712 3.288 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.204 1.204 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.236 0.764 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.115 0.885 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.823 -4.227 25.146 26.155 hybrid contribution -0.344 -2.185 -0.110 2.215 sum 5.479 -6.412 25.036 26.418 Atomic orbital electron populations 1.22392 0.98502 1.00914 1.00576 1.20115 0.92150 0.95827 0.84853 0.92343 1.22129 0.93588 1.01961 0.99892 1.21579 0.94752 0.97517 0.86482 1.46294 1.06713 1.56351 1.27871 1.19597 0.83301 0.81613 0.85464 1.90735 1.54848 1.44860 1.47658 1.22341 1.01854 0.90362 0.98830 1.20104 0.74903 0.89794 0.74139 1.93253 1.85125 1.85822 1.50988 1.93192 1.88350 1.83151 1.50737 1.93140 1.29951 1.96662 1.96093 1.22379 1.01843 0.99076 0.95328 1.22536 0.81968 0.93474 1.03335 1.87941 1.18426 1.81809 1.41489 1.22842 0.98741 0.91188 0.89467 1.22155 0.89211 1.00907 1.04965 1.42833 1.79694 1.09435 1.07225 1.19050 1.37099 0.95604 0.85565 0.89149 1.24644 1.01318 0.97340 0.95583 1.69689 1.52591 1.35545 1.00271 0.86599 0.78100 0.87000 0.77085 1.21158 1.21731 1.20411 0.93603 0.94194 0.92163 0.91585 0.91275 0.89831 0.90876 0.76409 0.89065 0.88318 0.87528 0.92466 0.87922 0.89861 0.89126 0.88549 0.80703 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.49 37.16 0.35 -2.29 16 2 C 0.18 3.17 2.89 -67.93 -0.20 2.98 16 3 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 4 C -0.14 -1.85 4.87 -26.73 -0.13 -1.98 16 5 C 0.12 1.75 5.56 -4.04 -0.02 1.73 16 6 N -0.72 -8.65 5.13 -60.30 -0.31 -8.96 16 7 C 0.52 6.69 4.89 -10.98 -0.05 6.64 16 8 O -0.51 -8.29 13.84 5.56 0.08 -8.21 16 9 C -0.13 -1.28 0.25 -155.47 -0.04 -1.32 16 10 C 0.47 4.82 2.22 37.16 0.08 4.90 16 11 F -0.17 -2.15 16.58 2.25 0.04 -2.11 16 12 F -0.17 -1.64 16.18 2.25 0.04 -1.61 16 13 F -0.18 -1.76 14.65 2.25 0.03 -1.73 16 14 C -0.15 -1.09 4.61 -26.59 -0.12 -1.21 16 15 C 0.06 0.52 6.62 37.20 0.25 0.76 16 16 O -0.38 -3.83 10.77 -35.23 -0.38 -4.21 16 17 C 0.05 0.54 6.55 37.21 0.24 0.78 16 18 C -0.13 -1.28 4.31 -26.59 -0.11 -1.40 16 19 N -0.75 -16.92 4.38 -53.43 -0.23 -17.15 16 20 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 24 Si 0.88 22.33 27.74 -169.99 -4.71 17.61 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 27 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.40 3.82 6.05 -40.82 -0.25 3.58 16 36 H 0.09 0.53 7.29 -51.93 -0.38 0.15 16 37 H 0.10 0.63 7.73 -51.93 -0.40 0.22 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.01 5.80 -51.93 -0.30 0.71 16 42 H 0.09 0.72 7.72 -51.93 -0.40 0.32 16 43 H 0.10 0.99 7.79 -51.93 -0.40 0.59 16 44 H 0.36 8.14 5.66 -40.82 -0.23 7.90 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.78 364.90 -5.73 -38.51 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.54 Total: 8.07 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -0.01 Total: 2.83 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.23 Total: -54.66 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.30 Total: -12.42 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 0.11 Total: -5.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.61 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.78 -5.73 -38.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725002202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -190.308 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds