Wall clock time and date at job start Tue Mar 31 2020 20:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99872 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.54329 * 59.82122 * 9 7 6 11 11 F 1.39907 * 109.47017 * 60.00094 * 10 9 7 12 12 F 1.39894 * 109.47223 * 179.97438 * 10 9 7 13 13 F 1.39900 * 109.47167 * 300.00204 * 10 9 7 14 14 C 1.53175 * 109.54460 * 299.55417 * 9 7 6 15 15 C 1.53089 * 109.16306 * 297.11613 * 14 9 7 16 16 O 1.42902 * 109.41411 * 302.38836 * 15 14 9 17 17 C 1.42901 * 114.09901 * 61.15940 * 16 15 14 18 18 C 1.53096 * 109.41565 * 298.84388 * 17 16 15 19 19 N 1.46497 * 109.47224 * 240.00747 * 2 1 3 20 20 C 1.36939 * 120.00530 * 84.99153 * 19 2 1 21 21 H 1.07999 * 119.99437 * 0.02562 * 20 19 2 22 22 C 1.38808 * 120.00276 * 179.97438 * 20 19 2 23 23 N 1.31619 * 120.00333 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00092 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47575 * 89.99452 * 24 22 20 26 26 H 1.48499 * 109.46890 * 209.99907 * 24 22 20 27 27 H 1.48497 * 109.46723 * 329.99136 * 24 22 20 28 28 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 30 30 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 31 31 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 32 32 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 35 35 H 0.97005 * 120.00448 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.52201 * 57.02104 * 14 9 7 37 37 H 1.09003 * 109.52055 * 177.20661 * 14 9 7 38 38 H 1.09005 * 109.47573 * 182.40907 * 15 14 9 39 39 H 1.09001 * 109.49294 * 62.37700 * 15 14 9 40 40 H 1.09000 * 109.48672 * 178.86318 * 17 16 15 41 41 H 1.08997 * 109.48860 * 58.82999 * 17 16 15 42 42 H 1.08999 * 109.52150 * 297.70007 * 18 17 16 43 43 H 1.09000 * 109.52567 * 177.51441 * 18 17 16 44 44 H 0.97001 * 119.99762 * 264.99736 * 19 2 1 45 45 H 0.96993 * 120.00613 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 7 4.0533 -1.3044 2.5093 7 6 5.3743 -1.3407 2.7744 8 8 6.1586 -0.8015 2.0228 9 6 5.8767 -2.0512 4.0048 10 6 5.4684 -3.5246 3.9475 11 9 6.0226 -4.1182 2.8083 12 9 5.9359 -4.1829 5.0899 13 9 4.0738 -3.6202 3.8916 14 6 5.2762 -1.3994 5.2541 15 6 5.7540 0.0524 5.3424 16 8 7.1825 0.0815 5.3689 17 6 7.7991 -0.4719 4.2046 18 6 7.4033 -1.9448 4.0705 19 7 2.0183 -0.6904 -1.1962 20 6 2.1490 -0.0073 -2.3758 21 1 1.8924 1.0407 -2.4241 22 6 2.6122 -0.6614 -3.5091 23 7 2.7383 -0.0047 -4.6428 24 14 3.0567 -2.4738 -3.4253 25 1 1.8598 -3.2925 -3.7452 26 1 4.1325 -2.7655 -4.4066 27 1 3.5314 -2.8043 -2.0576 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.7517 -1.7716 1.2054 32 1 1.6054 -0.2618 2.1369 33 1 3.9995 -1.0727 0.4258 34 1 3.8532 0.4370 1.3572 35 1 3.4260 -1.7360 3.1103 36 1 4.1883 -1.4214 5.1893 37 1 5.6003 -1.9442 6.1407 38 1 5.3642 0.5086 6.2524 39 1 5.3952 0.6068 4.4753 40 1 8.8825 -0.3935 4.2948 41 1 7.4672 0.0754 3.3224 42 1 7.7704 -2.5006 4.9332 43 1 7.8368 -2.3569 3.1592 44 1 2.2491 -1.6316 -1.1527 45 1 3.0616 -0.4618 -5.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725002202.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:38 Heat of formation + Delta-G solvation = -252.314059 kcal Electronic energy + Delta-G solvation = -31848.701117 eV Core-core repulsion = 27064.419344 eV Total energy + Delta-G solvation = -4784.281774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.41454 -48.89621 -48.83693 -42.01011 -39.50943 -38.28839 -36.13053 -35.59790 -34.21284 -32.33098 -31.61663 -29.88408 -28.62714 -25.82353 -25.06240 -24.90856 -24.06779 -22.94699 -21.77359 -20.93463 -19.77397 -19.59923 -19.58271 -19.30418 -17.89702 -17.33994 -17.06543 -17.00225 -16.49862 -16.26007 -15.93815 -15.86127 -15.76618 -15.66419 -15.26308 -15.19522 -15.07898 -14.97065 -14.93567 -14.82064 -14.57186 -14.33849 -13.75012 -13.64548 -13.52856 -13.49539 -13.24391 -12.93629 -12.64100 -12.50559 -12.33404 -12.27578 -12.11430 -12.04461 -11.79447 -11.79386 -11.57746 -11.14097 -10.99751 -10.61886 -10.27543 -9.30543 -8.02426 -5.33853 0.92425 1.33836 1.36959 1.43229 1.59052 1.70984 2.43831 2.46483 2.58650 2.78127 2.85133 3.30208 3.33165 3.35276 3.46753 3.61241 3.77019 3.90209 4.11644 4.14075 4.15617 4.23856 4.32177 4.42243 4.55157 4.62674 4.68400 4.70729 4.79984 4.80237 4.87286 4.92848 4.98377 5.06588 5.11560 5.26934 5.35197 5.58401 5.80079 6.09817 6.21987 6.23507 6.90673 7.09563 7.87017 8.03444 9.19656 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.003444 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.032589 B = 8129.138257 C = 8411.681184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.121 4.121 5 C 0.126 3.874 6 N -0.707 5.707 7 C 0.514 3.486 8 O -0.547 6.547 9 C -0.123 4.123 10 C 0.467 3.533 11 F -0.187 7.187 12 F -0.164 7.164 13 F -0.173 7.173 14 C -0.144 4.144 15 C 0.058 3.942 16 O -0.388 6.388 17 C 0.056 3.944 18 C -0.134 4.134 19 N -0.752 5.752 20 C -0.220 4.220 21 H 0.059 0.941 22 C -0.064 4.064 23 N -0.986 5.986 24 Si 0.947 3.053 25 H -0.276 1.276 26 H -0.301 1.301 27 H -0.258 1.258 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.042 0.958 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.134 0.866 39 H 0.040 0.960 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.111 0.889 43 H 0.083 0.917 44 H 0.363 0.637 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -6.491 29.567 30.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.064 0.936 4 C -0.159 4.159 5 C 0.003 3.997 6 N -0.361 5.361 7 C 0.298 3.702 8 O -0.425 6.425 9 C -0.128 4.128 10 C 0.413 3.587 11 F -0.168 7.168 12 F -0.145 7.145 13 F -0.154 7.154 14 C -0.182 4.182 15 C -0.018 4.018 16 O -0.306 6.306 17 C -0.020 4.020 18 C -0.172 4.172 19 N -0.396 5.396 20 C -0.352 4.352 21 H 0.077 0.923 22 C -0.255 4.255 23 N -0.637 5.637 24 Si 0.776 3.224 25 H -0.202 1.202 26 H -0.228 1.228 27 H -0.183 1.183 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.059 0.941 40 H 0.135 0.865 41 H 0.073 0.927 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.196 0.804 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.852 -5.881 29.045 30.029 hybrid contribution -0.085 -1.550 -1.212 1.970 sum 4.767 -7.431 27.833 29.200 Atomic orbital electron populations 1.22250 0.96647 1.01533 1.01039 1.20426 0.93357 0.95374 0.84744 0.93625 1.21995 0.92303 1.02500 0.99149 1.21287 0.95626 0.96754 0.86056 1.46100 1.06913 1.55927 1.27151 1.20139 0.83084 0.81022 0.85929 1.90730 1.55882 1.46582 1.49267 1.22333 1.02131 0.89960 0.98380 1.20101 0.75025 0.89745 0.73873 1.93227 1.85444 1.86124 1.52035 1.93211 1.88279 1.82975 1.50085 1.93144 1.29537 1.96642 1.96062 1.22486 1.03032 0.98275 0.94360 1.22733 0.80998 0.94106 1.03980 1.87928 1.19660 1.81936 1.41126 1.22768 0.99621 0.91111 0.88528 1.22174 0.89106 1.00725 1.05205 1.42879 1.79920 1.09533 1.07235 1.19039 1.34365 0.94464 0.87302 0.92322 1.25399 1.02741 1.01955 0.95384 1.69866 1.55142 1.37515 1.01166 0.85519 0.77633 0.81638 0.77618 1.20221 1.22840 1.18326 0.92856 0.90236 0.95235 0.90383 0.86921 0.93958 0.91880 0.74594 0.86911 0.86420 0.84796 0.94143 0.86508 0.92658 0.87040 0.89884 0.80443 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 9.49 71.98 0.68 -3.94 16 2 C 0.17 5.68 2.89 44.99 0.13 5.82 16 3 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 4 C -0.12 -2.88 4.87 30.59 0.15 -2.73 16 5 C 0.13 3.57 5.56 86.38 0.48 4.05 16 6 N -0.71 -15.59 5.13 -463.07 -2.38 -17.97 16 7 C 0.51 12.80 4.89 87.66 0.43 13.22 16 8 O -0.55 -18.31 13.84 -3.01 -0.04 -18.35 16 9 C -0.12 -2.19 0.25 -52.81 -0.01 -2.21 16 10 C 0.47 8.51 2.22 71.98 0.16 8.67 16 11 F -0.19 -4.45 16.58 44.97 0.75 -3.70 16 12 F -0.16 -2.61 16.18 44.97 0.73 -1.88 16 13 F -0.17 -2.87 14.65 44.97 0.66 -2.21 16 14 C -0.14 -1.62 4.61 30.68 0.14 -1.47 16 15 C 0.06 0.80 6.62 72.01 0.48 1.28 16 16 O -0.39 -7.18 10.77 -148.98 -1.60 -8.78 16 17 C 0.06 1.08 6.55 72.01 0.47 1.55 16 18 C -0.13 -2.39 4.31 30.69 0.13 -2.25 16 19 N -0.75 -33.66 4.38 -322.95 -1.41 -35.08 16 20 C -0.22 -12.45 10.41 84.03 0.87 -11.58 16 21 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 22 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 23 N -0.99 -64.23 13.97 21.65 0.30 -63.93 16 24 Si 0.95 46.81 27.74 68.60 1.90 48.72 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 27 H -0.26 -11.74 6.52 99.48 0.65 -11.09 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 30 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.56 7.75 -2.39 -0.02 1.54 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.42 6.47 6.05 -92.70 -0.56 5.91 16 36 H 0.11 0.79 7.29 -2.39 -0.02 0.78 16 37 H 0.12 0.97 7.73 -2.39 -0.02 0.95 16 38 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.04 0.69 7.38 -2.39 -0.02 0.68 16 40 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.39 5.80 -2.39 -0.01 1.38 16 42 H 0.11 1.50 7.72 -2.39 -0.02 1.48 16 43 H 0.08 1.70 7.79 -2.39 -0.02 1.68 16 44 H 0.36 15.88 5.66 -92.71 -0.52 15.36 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -74.92 364.90 3.37 -71.55 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.12 Total: 24.55 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 4.58 Total: 7.08 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -3.49 Total: -116.97 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.65 Total: -27.13 kcal Atomic # 9 Polarization: -9.93 SS G_CDS: 2.13 Total: -7.79 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.72 kcal Total: -74.92 3.37 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725002202.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.764 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds