Wall clock time and date at job start Tue Mar 31 2020 21:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46943 * 2 1 4 4 C 1.52992 * 109.47234 * 239.99291 * 2 1 3 5 5 N 1.46502 * 109.47317 * 184.99952 * 4 2 1 6 6 C 1.34771 * 120.00263 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00030 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00068 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99712 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00389 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99891 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99816 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99870 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47143 * 89.99922 * 14 12 10 16 16 H 1.48502 * 109.47052 * 210.00260 * 14 12 10 17 17 H 1.48504 * 109.46953 * 330.00078 * 14 12 10 18 18 N 1.46902 * 109.46918 * 119.99269 * 2 1 3 19 19 C 1.46905 * 110.99904 * 53.01059 * 18 2 1 20 20 C 1.46899 * 111.00081 * 289.05632 * 18 2 1 21 21 H 1.08996 * 109.47289 * 53.99655 * 20 18 2 22 22 C 1.53003 * 109.46947 * 173.99702 * 20 18 2 23 23 C 1.50696 * 109.47243 * 293.99611 * 20 18 2 24 24 C 1.38389 * 120.00412 * 154.18045 * 23 20 18 25 25 N 1.32123 * 119.99673 * 179.78066 * 24 23 20 26 26 C 1.32150 * 120.00198 * 0.49653 * 25 24 23 27 27 C 1.38346 * 120.00245 * 359.73348 * 26 25 24 28 28 N 1.32130 * 119.99975 * 334.45704 * 23 20 18 29 29 H 1.08996 * 109.47112 * 58.57113 * 1 2 3 30 30 H 1.09001 * 109.47051 * 178.56493 * 1 2 3 31 31 H 1.08997 * 109.47500 * 298.56496 * 1 2 3 32 32 H 1.09000 * 109.47294 * 65.00109 * 4 2 1 33 33 H 1.09005 * 109.47792 * 305.00148 * 4 2 1 34 34 H 0.97004 * 119.99531 * 0.02562 * 5 4 2 35 35 H 1.08994 * 109.47018 * 299.99806 * 8 6 5 36 36 H 1.09000 * 109.47048 * 59.99452 * 8 6 5 37 37 H 0.97000 * 119.99351 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.47280 * 53.53612 * 19 18 2 39 39 H 1.09001 * 109.47144 * 173.53668 * 19 18 2 40 40 H 1.09003 * 109.46924 * 293.53766 * 19 18 2 41 41 H 1.09002 * 109.47055 * 174.13259 * 22 20 18 42 42 H 1.08998 * 109.47068 * 294.12969 * 22 20 18 43 43 H 1.08996 * 109.47267 * 54.13152 * 22 20 18 44 44 H 1.08002 * 120.00009 * 0.02562 * 24 23 20 45 45 H 1.08001 * 120.00069 * 179.71643 * 26 25 24 46 46 H 1.07997 * 119.99808 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1731 -1.4285 -2.1909 7 8 3.5701 -1.8836 -3.1396 8 6 5.6750 -1.5371 -2.1302 9 16 6.2784 -2.3904 -3.6081 10 6 8.0102 -2.3773 -3.2832 11 1 8.3863 -1.9248 -2.3776 12 6 8.8909 -2.9497 -4.1906 13 7 10.1845 -2.9404 -3.9477 14 14 8.2402 -3.7331 -5.7566 15 1 8.1833 -2.7127 -6.8339 16 1 9.1421 -4.8385 -6.1688 17 1 6.8778 -4.2710 -5.5118 18 7 2.0196 -0.6924 1.1995 19 6 1.4171 -2.0267 1.3200 20 6 1.7730 0.1076 2.4067 21 1 0.7165 0.3707 2.4586 22 6 2.1575 -0.7053 3.6445 23 6 2.6018 1.3651 2.3541 24 6 2.1903 2.4943 3.0401 25 7 2.9193 3.5954 2.9974 26 6 4.0362 3.6214 2.2916 27 6 4.4452 2.4940 1.6019 28 7 3.7186 1.3912 1.6485 29 1 -0.3633 0.5358 -0.8769 30 1 -0.3633 -1.0274 -0.0257 31 1 -0.3634 0.4914 0.9025 32 1 1.7517 -0.1585 -2.1369 33 1 1.6054 -1.7200 -1.2950 34 1 3.9824 -0.4628 -0.4314 35 1 6.1099 -0.5387 -2.0837 36 1 5.9630 -2.1005 -1.2427 37 1 10.7998 -3.3407 -4.5817 38 1 1.5763 -2.5821 0.3957 39 1 1.8805 -2.5611 2.1493 40 1 0.3474 -1.9270 1.5044 41 1 2.0737 -0.0777 4.5318 42 1 1.4885 -1.5605 3.7399 43 1 3.1844 -1.0567 3.5438 44 1 1.2753 2.4743 3.6136 45 1 4.6297 4.5229 2.2530 46 1 5.3582 2.5152 1.0255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725159981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:24 Heat of formation + Delta-G solvation = 24.023315 kcal Electronic energy + Delta-G solvation = -27192.969787 eV Core-core repulsion = 23437.573264 eV Total energy + Delta-G solvation = -3755.396523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56110 -39.61024 -38.52686 -35.09660 -34.31409 -32.99639 -32.38149 -31.44155 -29.53759 -29.16659 -27.00929 -26.00137 -25.47560 -25.05084 -24.30342 -21.80890 -20.17592 -19.90129 -18.00364 -17.74723 -17.34514 -16.84475 -16.42615 -16.15806 -16.11529 -15.20210 -14.99315 -14.90695 -14.69651 -14.54044 -14.02567 -13.66569 -13.57022 -13.36505 -13.25040 -12.96850 -12.73076 -12.66973 -12.51423 -12.18595 -12.13340 -11.87666 -11.80000 -11.71052 -11.57757 -11.24673 -11.20094 -10.98542 -10.95981 -10.51663 -9.80212 -9.59637 -9.36636 -9.32196 -8.95166 -8.73069 -8.57999 -8.41526 -6.83873 -6.23636 -3.93966 0.41134 0.83883 2.88364 3.15761 3.29417 3.36534 3.37884 3.48518 3.55357 3.62316 3.83631 3.92638 4.20933 4.30942 4.38437 4.51808 4.60656 4.69733 4.80528 4.87002 4.92454 4.93639 4.97172 5.04390 5.11703 5.15566 5.18891 5.28307 5.32114 5.35310 5.41600 5.49274 5.63000 5.70733 5.76345 5.83581 5.89073 5.92732 6.00982 6.15780 6.64254 6.67035 6.84737 6.99170 7.49414 7.94447 8.00040 8.47801 8.71493 9.23021 10.85739 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.002748 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.535244 B =10186.509029 C =11222.447375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 H 0.084 0.916 4 C 0.135 3.865 5 N -0.721 5.721 6 C 0.528 3.472 7 O -0.530 6.530 8 C -0.120 4.120 9 S -0.145 6.145 10 C -0.519 4.519 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.882 5.882 14 Si 0.857 3.143 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.235 1.235 18 N -0.512 5.512 19 C 0.015 3.985 20 C 0.133 3.867 21 H 0.064 0.936 22 C -0.145 4.145 23 C 0.087 3.913 24 C 0.048 3.952 25 N -0.437 5.437 26 C 0.041 3.959 27 C 0.054 3.946 28 N -0.404 5.404 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.412 0.588 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.270 0.730 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.164 0.836 45 H 0.169 0.831 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.699 10.730 17.952 29.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.037 4.037 3 H 0.102 0.898 4 C 0.010 3.990 5 N -0.376 5.376 6 C 0.313 3.687 7 O -0.406 6.406 8 C -0.271 4.271 9 S 0.082 5.918 10 C -0.666 4.666 11 H 0.106 0.894 12 C -0.114 4.114 13 N -0.519 5.519 14 Si 0.682 3.318 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.159 1.159 18 N -0.236 5.236 19 C -0.132 4.132 20 C 0.023 3.977 21 H 0.082 0.918 22 C -0.203 4.203 23 C -0.054 4.054 24 C -0.113 4.113 25 N -0.152 5.152 26 C -0.118 4.118 27 C -0.106 4.106 28 N -0.119 5.119 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.048 0.952 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.181 0.819 45 H 0.186 0.814 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -21.000 9.867 16.281 28.345 hybrid contribution 0.184 0.621 0.873 1.087 sum -20.816 10.488 17.154 28.940 Atomic orbital electron populations 1.22410 0.96595 1.02961 1.02537 1.21936 0.92982 0.98632 0.90187 0.89832 1.21220 0.81650 1.00280 0.95838 1.45810 1.06636 1.60866 1.24257 1.20249 0.89373 0.77110 0.81928 1.90677 1.69926 1.46919 1.33095 1.23239 0.93729 1.05194 1.04900 1.84744 1.06781 1.74823 1.25484 1.22340 0.88737 1.44368 1.11189 0.89427 1.24713 0.94098 0.94581 0.97959 1.69944 1.01542 1.43723 1.36709 0.86733 0.81314 0.80173 0.83624 1.19271 1.20046 1.15891 1.62059 1.58311 1.02547 1.00651 1.22547 0.96870 0.90212 1.03598 1.20482 0.95629 0.89585 0.91973 0.91813 1.21922 1.03509 0.99839 0.95024 1.22165 0.93510 0.95724 0.93997 1.23478 1.00147 0.89173 0.98471 1.68456 1.04869 1.26700 1.15135 1.23808 0.93957 1.00064 0.93986 1.23995 0.99929 0.89294 0.97346 1.68387 1.03394 1.26166 1.13958 0.91513 0.91504 0.92309 0.91597 0.91743 0.75142 0.88777 0.88578 0.92029 0.90581 0.90751 0.95159 0.91978 0.91297 0.90839 0.81917 0.81412 0.81009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 8.41 37.16 0.31 -0.96 16 2 C 0.07 0.63 2.20 -67.71 -0.15 0.48 16 3 H 0.08 0.82 6.57 -51.93 -0.34 0.48 16 4 C 0.14 1.60 4.88 -4.04 -0.02 1.58 16 5 N -0.72 -10.20 5.39 -60.30 -0.32 -10.53 16 6 C 0.53 9.92 7.85 -10.99 -0.09 9.83 16 7 O -0.53 -11.87 15.86 5.56 0.09 -11.78 16 8 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 9 S -0.14 -3.77 18.55 -107.50 -1.99 -5.76 16 10 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 11 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 12 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 13 N -0.88 -26.96 13.97 55.49 0.78 -26.19 16 14 Si 0.86 22.14 27.74 -169.99 -4.72 17.42 16 15 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.23 -6.07 6.74 56.52 0.38 -5.69 16 18 N -0.51 -4.23 3.64 -228.30 -0.83 -5.06 16 19 C 0.02 0.12 7.88 60.07 0.47 0.59 16 20 C 0.13 0.90 2.25 -68.87 -0.15 0.75 16 21 H 0.06 0.35 6.40 -51.93 -0.33 0.01 16 22 C -0.15 -0.86 8.37 37.16 0.31 -0.55 16 23 C 0.09 0.70 4.80 -82.41 -0.40 0.31 16 24 C 0.05 0.36 10.90 -17.37 -0.19 0.17 16 25 N -0.44 -3.86 10.50 -13.06 -0.14 -4.00 16 26 C 0.04 0.31 11.22 -17.37 -0.20 0.11 16 27 C 0.05 0.44 11.22 -17.37 -0.20 0.24 16 28 N -0.40 -3.82 9.20 -9.29 -0.09 -3.91 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.45 6.55 -51.93 -0.34 0.11 16 31 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.80 6.69 -51.93 -0.35 0.45 16 34 H 0.41 5.39 8.14 -40.82 -0.33 5.06 16 35 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 36 H 0.10 1.86 8.14 -51.92 -0.42 1.44 16 37 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.08 0.70 6.34 -51.93 -0.33 0.37 16 39 H 0.07 0.53 6.49 -51.93 -0.34 0.19 16 40 H 0.03 0.19 6.65 -51.93 -0.35 -0.16 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.34 6.75 -51.93 -0.35 -0.01 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -35.60 383.96 -8.07 -43.67 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.78 Total: 2.21 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 0.15 Total: -1.86 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.60 Total: -49.69 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.42 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -1.99 Total: -5.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.60 -8.07 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725159981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.693 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds