Wall clock time and date at job start Tue Mar 31 2020 21:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46943 * 2 1 4 4 C 1.52992 * 109.47234 * 239.99291 * 2 1 3 5 5 N 1.46502 * 109.47317 * 184.99952 * 4 2 1 6 6 C 1.34771 * 120.00263 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00030 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00068 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.76202 * 99.99712 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00389 * 0.02562 * 10 9 8 12 12 C 1.38805 * 119.99891 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99816 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99870 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47143 * 89.99922 * 14 12 10 16 16 H 1.48502 * 109.47052 * 210.00260 * 14 12 10 17 17 H 1.48504 * 109.46953 * 330.00078 * 14 12 10 18 18 N 1.46902 * 109.46918 * 119.99269 * 2 1 3 19 19 C 1.46905 * 110.99904 * 53.01059 * 18 2 1 20 20 C 1.46899 * 111.00081 * 289.05632 * 18 2 1 21 21 H 1.08996 * 109.47289 * 53.99655 * 20 18 2 22 22 C 1.53003 * 109.46947 * 173.99702 * 20 18 2 23 23 C 1.50696 * 109.47243 * 293.99611 * 20 18 2 24 24 C 1.38389 * 120.00412 * 154.18045 * 23 20 18 25 25 N 1.32123 * 119.99673 * 179.78066 * 24 23 20 26 26 C 1.32150 * 120.00198 * 0.49653 * 25 24 23 27 27 C 1.38346 * 120.00245 * 359.73348 * 26 25 24 28 28 N 1.32130 * 119.99975 * 334.45704 * 23 20 18 29 29 H 1.08996 * 109.47112 * 58.57113 * 1 2 3 30 30 H 1.09001 * 109.47051 * 178.56493 * 1 2 3 31 31 H 1.08997 * 109.47500 * 298.56496 * 1 2 3 32 32 H 1.09000 * 109.47294 * 65.00109 * 4 2 1 33 33 H 1.09005 * 109.47792 * 305.00148 * 4 2 1 34 34 H 0.97004 * 119.99531 * 0.02562 * 5 4 2 35 35 H 1.08994 * 109.47018 * 299.99806 * 8 6 5 36 36 H 1.09000 * 109.47048 * 59.99452 * 8 6 5 37 37 H 0.97000 * 119.99351 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.47280 * 53.53612 * 19 18 2 39 39 H 1.09001 * 109.47144 * 173.53668 * 19 18 2 40 40 H 1.09003 * 109.46924 * 293.53766 * 19 18 2 41 41 H 1.09002 * 109.47055 * 174.13259 * 22 20 18 42 42 H 1.08998 * 109.47068 * 294.12969 * 22 20 18 43 43 H 1.08996 * 109.47267 * 54.13152 * 22 20 18 44 44 H 1.08002 * 120.00009 * 0.02562 * 24 23 20 45 45 H 1.08001 * 120.00069 * 179.71643 * 26 25 24 46 46 H 1.07997 * 119.99808 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.1731 -1.4285 -2.1909 7 8 3.5701 -1.8836 -3.1396 8 6 5.6750 -1.5371 -2.1302 9 16 6.2784 -2.3904 -3.6081 10 6 8.0102 -2.3773 -3.2832 11 1 8.3863 -1.9248 -2.3776 12 6 8.8909 -2.9497 -4.1906 13 7 10.1845 -2.9404 -3.9477 14 14 8.2402 -3.7331 -5.7566 15 1 8.1833 -2.7127 -6.8339 16 1 9.1421 -4.8385 -6.1688 17 1 6.8778 -4.2710 -5.5118 18 7 2.0196 -0.6924 1.1995 19 6 1.4171 -2.0267 1.3200 20 6 1.7730 0.1076 2.4067 21 1 0.7165 0.3707 2.4586 22 6 2.1575 -0.7053 3.6445 23 6 2.6018 1.3651 2.3541 24 6 2.1903 2.4943 3.0401 25 7 2.9193 3.5954 2.9974 26 6 4.0362 3.6214 2.2916 27 6 4.4452 2.4940 1.6019 28 7 3.7186 1.3912 1.6485 29 1 -0.3633 0.5358 -0.8769 30 1 -0.3633 -1.0274 -0.0257 31 1 -0.3634 0.4914 0.9025 32 1 1.7517 -0.1585 -2.1369 33 1 1.6054 -1.7200 -1.2950 34 1 3.9824 -0.4628 -0.4314 35 1 6.1099 -0.5387 -2.0837 36 1 5.9630 -2.1005 -1.2427 37 1 10.7998 -3.3407 -4.5817 38 1 1.5763 -2.5821 0.3957 39 1 1.8805 -2.5611 2.1493 40 1 0.3474 -1.9270 1.5044 41 1 2.0737 -0.0777 4.5318 42 1 1.4885 -1.5605 3.7399 43 1 3.1844 -1.0567 3.5438 44 1 1.2753 2.4743 3.6136 45 1 4.6297 4.5229 2.2530 46 1 5.3582 2.5152 1.0255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725159981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:23 Heat of formation + Delta-G solvation = -2.489435 kcal Electronic energy + Delta-G solvation = -27194.119467 eV Core-core repulsion = 23437.573264 eV Total energy + Delta-G solvation = -3756.546203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.13427 -40.73441 -39.54653 -36.01954 -35.01971 -34.66138 -33.88778 -32.16058 -30.90699 -29.79778 -27.88430 -27.57265 -26.87459 -25.63841 -24.88619 -22.47678 -21.62570 -20.62211 -19.78674 -18.59489 -17.91182 -17.74470 -17.47374 -17.39680 -17.06036 -16.89677 -16.36462 -15.94683 -15.65823 -15.28978 -15.23185 -14.92870 -14.73245 -14.44199 -14.22913 -13.96744 -13.83630 -13.53620 -13.33661 -13.22130 -13.07608 -13.00321 -12.75816 -12.66433 -12.55840 -12.44475 -12.37890 -12.21045 -11.87197 -11.84308 -11.68115 -11.15951 -10.95604 -10.52212 -10.14132 -10.01021 -9.90291 -9.18347 -8.97772 -8.50426 -6.20819 -0.13617 0.25063 1.00802 1.32120 1.48203 1.57968 1.63444 2.25650 2.33614 2.70683 2.77383 2.84700 2.87718 3.10973 3.42528 3.65389 3.73174 3.82590 3.91654 4.06179 4.19359 4.23480 4.25568 4.27910 4.36174 4.47176 4.48889 4.49371 4.58398 4.62561 4.67321 4.71466 4.78202 4.82281 4.95254 5.03320 5.13463 5.24795 5.32271 5.46732 5.53111 5.72166 6.06606 6.11073 6.12643 6.43616 6.61463 6.92822 6.94738 7.28745 8.62199 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014545 B = 0.002748 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.535244 B =10186.509029 C =11222.447375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.084 3.916 3 H 0.076 0.924 4 C 0.132 3.868 5 N -0.697 5.697 6 C 0.532 3.468 7 O -0.569 6.569 8 C -0.108 4.108 9 S -0.172 6.172 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.046 3.954 13 N -0.918 5.918 14 Si 0.915 3.085 15 H -0.262 1.262 16 H -0.258 1.258 17 H -0.237 1.237 18 N -0.527 5.527 19 C 0.018 3.982 20 C 0.136 3.864 21 H 0.086 0.914 22 C -0.140 4.140 23 C 0.080 3.920 24 C 0.048 3.952 25 N -0.460 5.460 26 C 0.039 3.961 27 C 0.042 3.958 28 N -0.430 5.430 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.420 0.580 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.277 0.723 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.189 0.811 45 H 0.190 0.810 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.819 11.204 18.919 31.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.094 0.906 4 C 0.008 3.992 5 N -0.350 5.350 6 C 0.317 3.683 7 O -0.448 6.448 8 C -0.259 4.259 9 S 0.054 5.946 10 C -0.676 4.676 11 H 0.079 0.921 12 C -0.160 4.160 13 N -0.556 5.556 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.183 1.183 17 H -0.161 1.161 18 N -0.251 5.251 19 C -0.130 4.130 20 C 0.027 3.973 21 H 0.103 0.897 22 C -0.198 4.198 23 C -0.061 4.061 24 C -0.112 4.112 25 N -0.174 5.174 26 C -0.119 4.119 27 C -0.118 4.118 28 N -0.145 5.145 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.258 0.742 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.206 0.794 45 H 0.207 0.793 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -23.123 10.367 17.297 30.681 hybrid contribution 0.812 0.565 0.734 1.232 sum -22.311 10.932 18.030 30.698 Atomic orbital electron populations 1.22364 0.94691 1.03449 1.03447 1.21740 0.94252 0.97497 0.89001 0.90599 1.21420 0.79645 1.00559 0.97564 1.45654 1.07823 1.58682 1.22857 1.19927 0.88546 0.77452 0.82402 1.90665 1.70283 1.49098 1.34799 1.23221 0.95171 1.05261 1.02207 1.84637 1.04468 1.76226 1.29233 1.22470 0.90830 1.44016 1.10321 0.92125 1.25566 0.94330 0.95054 1.01007 1.70019 1.02700 1.44698 1.38158 0.85861 0.80800 0.79825 0.79847 1.18638 1.18272 1.16073 1.61984 1.59003 1.03009 1.01088 1.22515 0.98088 0.89643 1.02739 1.20570 0.96510 0.88941 0.91327 0.89685 1.21888 1.02388 1.00382 0.95129 1.22399 0.93348 0.96426 0.93970 1.23867 1.00680 0.88556 0.98123 1.68501 1.05578 1.27470 1.15875 1.24149 0.93821 1.00687 0.93283 1.24237 1.00390 0.89342 0.97829 1.68344 1.04258 1.26975 1.14912 0.91458 0.91159 0.90618 0.92182 0.92028 0.74247 0.87366 0.87486 0.91367 0.92489 0.90366 0.93272 0.90832 0.90029 0.93049 0.79425 0.79292 0.79977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.41 71.98 0.61 -1.38 16 2 C 0.08 1.32 2.20 44.91 0.10 1.42 16 3 H 0.08 1.36 6.57 -2.39 -0.02 1.34 16 4 C 0.13 3.00 4.88 86.38 0.42 3.42 16 5 N -0.70 -19.12 5.39 -463.07 -2.50 -21.62 16 6 C 0.53 19.70 7.85 87.66 0.69 20.39 16 7 O -0.57 -25.38 15.86 -3.02 -0.05 -25.43 16 8 C -0.11 -4.35 6.16 71.24 0.44 -3.91 16 9 S -0.17 -8.98 18.55 -56.49 -1.05 -10.02 16 10 C -0.53 -31.49 10.04 67.96 0.68 -30.81 16 11 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 12 C 0.05 2.73 5.50 84.86 0.47 3.19 16 13 N -0.92 -56.62 13.97 21.65 0.30 -56.32 16 14 Si 0.91 45.70 27.74 68.60 1.90 47.60 16 15 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 16 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 18 N -0.53 -7.71 3.64 -876.19 -3.19 -10.90 16 19 C 0.02 0.23 7.88 127.69 1.01 1.24 16 20 C 0.14 1.50 2.25 44.17 0.10 1.60 16 21 H 0.09 0.60 6.40 -2.39 -0.02 0.59 16 22 C -0.14 -1.36 8.37 71.98 0.60 -0.76 16 23 C 0.08 1.15 4.80 42.55 0.20 1.35 16 24 C 0.05 0.62 10.90 84.68 0.92 1.55 16 25 N -0.46 -7.41 10.50 -195.22 -2.05 -9.46 16 26 C 0.04 0.55 11.22 84.67 0.95 1.50 16 27 C 0.04 0.63 11.22 84.67 0.95 1.59 16 28 N -0.43 -7.67 9.20 -183.30 -1.69 -9.36 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.75 6.55 -2.39 -0.02 0.73 16 31 H 0.07 0.61 6.56 -2.39 -0.02 0.59 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.48 6.69 -2.38 -0.02 1.46 16 34 H 0.42 10.53 8.14 -92.71 -0.75 9.78 16 35 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 36 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 37 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.06 0.98 6.34 -2.39 -0.02 0.96 16 39 H 0.08 0.97 6.49 -2.39 -0.02 0.95 16 40 H 0.05 0.46 6.65 -2.39 -0.02 0.45 16 41 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.08 0.58 6.75 -2.39 -0.02 0.57 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 45 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -77.04 383.96 0.04 -77.00 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.21 Total: 18.13 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 8.14 Total: 0.38 kcal Atomic # 7 Polarization: -98.54 SS G_CDS: -9.11 Total: -107.65 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.05 Total: -10.02 kcal Total: -77.04 0.04 -77.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725159981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.509 kcal (2) G-P(sol) polarization free energy of solvation -77.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds