Wall clock time and date at job start Tue Mar 31 2020 21:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47194 * 2 1 4 4 C 1.50702 * 109.46850 * 240.00211 * 2 1 3 5 5 C 1.38394 * 120.00228 * 86.14193 * 4 2 1 6 6 N 1.32122 * 119.99469 * 180.27424 * 5 4 2 7 7 C 1.32154 * 120.00462 * 359.49605 * 6 5 4 8 8 C 1.38349 * 119.99707 * 0.50209 * 7 6 5 9 9 N 1.32123 * 120.00205 * 266.16600 * 4 2 1 10 10 N 1.46892 * 109.47088 * 120.00251 * 2 1 3 11 11 C 1.46904 * 111.00168 * 307.77292 * 10 2 1 12 12 C 1.46906 * 110.99884 * 183.82401 * 10 2 1 13 13 H 1.08998 * 109.46922 * 310.07198 * 12 10 2 14 14 C 1.52998 * 109.47130 * 70.07397 * 12 10 2 15 15 C 1.52995 * 109.47152 * 190.07350 * 12 10 2 16 16 N 1.46500 * 109.47265 * 54.99661 * 15 12 10 17 17 C 1.34779 * 120.00488 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99579 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00357 * 180.02562 * 17 16 15 20 20 S 1.80998 * 109.47146 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99856 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00195 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99580 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00564 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99748 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47152 * 60.00271 * 25 23 21 27 27 H 1.48498 * 109.47297 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47169 * 300.00409 * 25 23 21 29 29 H 1.08998 * 109.47367 * 186.22322 * 1 2 3 30 30 H 1.09003 * 109.47018 * 306.22452 * 1 2 3 31 31 H 1.09005 * 109.47287 * 66.21771 * 1 2 3 32 32 H 1.08001 * 120.00241 * 359.97438 * 5 4 2 33 33 H 1.07994 * 120.00055 * 180.25394 * 7 6 5 34 34 H 1.08001 * 119.99528 * 179.72721 * 8 7 6 35 35 H 1.09005 * 109.46849 * 66.21027 * 11 10 2 36 36 H 1.08995 * 109.46984 * 186.21035 * 11 10 2 37 37 H 1.08999 * 109.47139 * 306.21480 * 11 10 2 38 38 H 1.09001 * 109.47139 * 184.58871 * 14 12 10 39 39 H 1.08998 * 109.47227 * 304.58243 * 14 12 10 40 40 H 1.08996 * 109.47297 * 64.58101 * 14 12 10 41 41 H 1.09003 * 109.47565 * 174.99668 * 15 12 10 42 42 H 1.09001 * 109.47500 * 294.99873 * 15 12 10 43 43 H 0.97001 * 119.99755 * 0.02562 * 16 15 12 44 44 H 1.09008 * 109.46618 * 299.99901 * 19 17 16 45 45 H 1.08993 * 109.47353 * 59.99773 * 19 17 16 46 46 H 0.97001 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1869 -0.0144 -2.4167 6 7 2.6221 -0.6386 -3.4968 7 6 2.9192 -1.9251 -3.4420 8 6 2.7647 -2.6208 -2.2562 9 7 2.3246 -1.9978 -1.1771 10 7 2.0197 -0.6925 1.1993 11 6 1.4031 -0.1419 2.4138 12 6 3.4853 -0.6334 1.2799 13 1 3.9144 -0.9453 0.3277 14 6 3.9216 0.7997 1.5910 15 6 3.9732 -1.5672 2.3893 16 7 3.4550 -2.9172 2.1543 17 6 3.7578 -3.9137 3.0098 18 8 4.4589 -3.6926 3.9745 19 6 3.2252 -5.3025 2.7678 20 16 3.8022 -6.4072 4.0803 21 6 3.0531 -7.9154 3.5621 22 1 2.4503 -7.9391 2.6664 23 6 3.2378 -9.0731 4.3053 24 7 3.9721 -9.0442 5.3973 25 14 2.4430 -10.6721 3.7563 26 1 2.9377 -11.0317 2.4031 27 1 2.7908 -11.7522 4.7142 28 1 0.9681 -10.5033 3.7155 29 1 -0.3634 -1.0216 0.1114 30 1 -0.3633 0.6073 0.8291 31 1 -0.3634 0.4144 -0.9404 32 1 1.9472 1.0377 -2.4607 33 1 3.2789 -2.4343 -4.3239 34 1 3.0034 -3.6732 -2.2126 35 1 0.3350 -0.3595 2.4096 36 1 1.8629 -0.5950 3.2920 37 1 1.5539 0.9372 2.4406 38 1 5.0097 0.8608 1.5703 39 1 3.5055 1.4763 0.8445 40 1 3.5604 1.0830 2.5796 41 1 5.0629 -1.5915 2.3908 42 1 3.6166 -1.2038 3.3531 43 1 2.8946 -3.0940 1.3826 44 1 2.1354 -5.2785 2.7665 45 1 3.5818 -5.6655 1.8040 46 1 4.1008 -9.8532 5.9168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725159982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:27 Heat of formation + Delta-G solvation = 23.718059 kcal Electronic energy + Delta-G solvation = -27146.058589 eV Core-core repulsion = 23390.648828 eV Total energy + Delta-G solvation = -3755.409760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56585 -39.54248 -38.42664 -35.04406 -34.29329 -32.93049 -32.36496 -31.41082 -29.44725 -29.11850 -26.93232 -25.95159 -25.31888 -25.05164 -24.29200 -21.79134 -20.07003 -19.85298 -17.99910 -17.71688 -17.33890 -16.82966 -16.38216 -16.08632 -16.02551 -15.17014 -14.90490 -14.75007 -14.66069 -14.50823 -14.04500 -13.63236 -13.54411 -13.32680 -13.20872 -12.82034 -12.71482 -12.53675 -12.42154 -12.14738 -12.08301 -11.86915 -11.79441 -11.65935 -11.51292 -11.20587 -10.99385 -10.97901 -10.92217 -10.71018 -9.75027 -9.59643 -9.32523 -9.22935 -9.00107 -8.64727 -8.53429 -8.14528 -6.41584 -6.15334 -3.84760 0.40951 0.83703 3.15306 3.27001 3.28076 3.31543 3.32917 3.37339 3.45842 3.62535 3.91927 3.93186 4.21080 4.27092 4.31314 4.56591 4.64670 4.70625 4.85041 4.93609 4.94240 5.00065 5.07312 5.11773 5.19451 5.22072 5.29727 5.33790 5.36936 5.38668 5.49299 5.62163 5.69950 5.77048 5.84043 5.87099 5.98704 6.00865 6.04641 6.28595 6.68039 6.71676 6.93134 6.99302 7.49315 7.65585 8.05209 8.41568 8.84395 9.29781 10.92058 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002716 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.614970 B =10305.732052 C =11439.847023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.133 3.867 3 H 0.064 0.936 4 C 0.088 3.912 5 C 0.048 3.952 6 N -0.437 5.437 7 C 0.041 3.959 8 C 0.054 3.946 9 N -0.404 5.404 10 N -0.512 5.512 11 C 0.017 3.983 12 C 0.071 3.929 13 H 0.084 0.916 14 C -0.185 4.185 15 C 0.135 3.865 16 N -0.723 5.723 17 C 0.529 3.471 18 O -0.528 6.528 19 C -0.149 4.149 20 S -0.062 6.062 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.410 0.590 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.730 22.938 -16.687 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.023 3.977 3 H 0.082 0.918 4 C -0.053 4.053 5 C -0.113 4.113 6 N -0.152 5.152 7 C -0.119 4.119 8 C -0.106 4.106 9 N -0.119 5.119 10 N -0.236 5.236 11 C -0.131 4.131 12 C -0.038 4.038 13 H 0.102 0.898 14 C -0.244 4.244 15 C 0.010 3.990 16 N -0.378 5.378 17 C 0.315 3.685 18 O -0.404 6.404 19 C -0.300 4.300 20 S 0.164 5.836 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.200 1.200 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.247 0.753 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.634 22.704 -14.967 27.585 hybrid contribution -1.285 -0.560 -1.908 2.368 sum -5.919 22.144 -16.875 28.463 Atomic orbital electron populations 1.21900 0.92354 1.03735 1.02196 1.20496 0.96079 0.94317 0.86791 0.91837 1.22172 0.95976 0.91454 0.95746 1.23483 0.97157 1.01475 0.89138 1.68455 1.07625 1.09783 1.29301 1.23802 0.97376 0.91138 0.99540 1.23983 0.95313 1.02056 0.89238 1.68396 1.06188 1.08359 1.28936 1.62066 1.05300 1.54827 1.01360 1.22524 1.00619 0.97319 0.92639 1.21949 0.87797 0.94203 0.99809 0.89792 1.22410 1.02615 0.97113 1.02312 1.21215 0.98279 0.82342 0.97181 1.45839 1.54250 1.07917 1.29787 1.20279 0.79999 0.86082 0.82153 1.90682 1.37208 1.83515 1.28974 1.23488 1.04164 0.95777 1.06580 1.85351 1.67179 1.01432 1.29600 1.22845 1.36671 0.94877 1.13836 0.91027 1.24981 0.95179 0.98813 0.94609 1.70014 1.36719 1.29046 1.14642 0.86246 0.79551 0.81346 0.78472 1.19969 1.20875 1.19963 0.90862 0.91337 0.92036 0.81899 0.81440 0.81063 0.90855 0.90520 0.95249 0.91560 0.92349 0.91579 0.91645 0.91788 0.75341 0.89354 0.89501 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.46 37.16 0.31 -0.57 16 2 C 0.13 0.93 2.19 -68.87 -0.15 0.78 16 3 H 0.06 0.36 6.37 -51.93 -0.33 0.03 16 4 C 0.09 0.72 4.77 -82.41 -0.39 0.33 16 5 C 0.05 0.36 10.90 -17.37 -0.19 0.18 16 6 N -0.44 -3.87 10.50 -13.06 -0.14 -4.00 16 7 C 0.04 0.31 11.23 -17.37 -0.20 0.11 16 8 C 0.05 0.43 11.22 -17.37 -0.20 0.24 16 9 N -0.40 -3.85 9.05 -9.28 -0.08 -3.94 16 10 N -0.51 -4.41 3.66 -228.30 -0.84 -5.24 16 11 C 0.02 0.13 7.78 60.07 0.47 0.60 16 12 C 0.07 0.66 2.18 -67.71 -0.15 0.51 16 13 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16 14 C -0.19 -1.35 8.39 37.16 0.31 -1.04 16 15 C 0.13 1.68 4.87 -4.04 -0.02 1.66 16 16 N -0.72 -10.73 5.39 -60.29 -0.32 -11.05 16 17 C 0.53 10.46 7.85 -10.99 -0.09 10.38 16 18 O -0.53 -12.48 15.86 5.55 0.09 -12.39 16 19 C -0.15 -3.18 6.16 36.00 0.22 -2.95 16 20 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 21 C -0.53 -15.52 9.50 30.94 0.29 -15.23 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.59 13.22 55.49 0.73 -25.86 16 25 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.36 6.85 -51.93 -0.36 0.00 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.07 0.55 6.74 -51.93 -0.35 0.20 16 36 H 0.08 0.74 6.18 -51.93 -0.32 0.42 16 37 H 0.03 0.19 6.94 -51.93 -0.36 -0.17 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.36 6.45 -51.93 -0.33 0.03 16 40 H 0.07 0.47 6.84 -51.93 -0.35 0.12 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 43 H 0.41 5.60 8.14 -40.82 -0.33 5.26 16 44 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 45 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 46 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -35.99 386.73 -8.59 -44.59 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.76 Total: 2.33 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 0.14 Total: -2.98 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.65 Total: -50.09 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.99 -8.59 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725159982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.305 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds