Wall clock time and date at job start Tue Mar 31 2020 21:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47194 * 2 1 4 4 C 1.50702 * 109.46850 * 240.00211 * 2 1 3 5 5 C 1.38394 * 120.00228 * 86.14193 * 4 2 1 6 6 N 1.32122 * 119.99469 * 180.27424 * 5 4 2 7 7 C 1.32154 * 120.00462 * 359.49605 * 6 5 4 8 8 C 1.38349 * 119.99707 * 0.50209 * 7 6 5 9 9 N 1.32123 * 120.00205 * 266.16600 * 4 2 1 10 10 N 1.46892 * 109.47088 * 120.00251 * 2 1 3 11 11 C 1.46904 * 111.00168 * 307.77292 * 10 2 1 12 12 C 1.46906 * 110.99884 * 183.82401 * 10 2 1 13 13 H 1.08998 * 109.46922 * 310.07198 * 12 10 2 14 14 C 1.52998 * 109.47130 * 70.07397 * 12 10 2 15 15 C 1.52995 * 109.47152 * 190.07350 * 12 10 2 16 16 N 1.46500 * 109.47265 * 54.99661 * 15 12 10 17 17 C 1.34779 * 120.00488 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99579 * 0.02562 * 17 16 15 19 19 C 1.50698 * 120.00357 * 180.02562 * 17 16 15 20 20 S 1.80998 * 109.47146 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99856 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00195 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99580 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00564 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99748 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47152 * 60.00271 * 25 23 21 27 27 H 1.48498 * 109.47297 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.47169 * 300.00409 * 25 23 21 29 29 H 1.08998 * 109.47367 * 186.22322 * 1 2 3 30 30 H 1.09003 * 109.47018 * 306.22452 * 1 2 3 31 31 H 1.09005 * 109.47287 * 66.21771 * 1 2 3 32 32 H 1.08001 * 120.00241 * 359.97438 * 5 4 2 33 33 H 1.07994 * 120.00055 * 180.25394 * 7 6 5 34 34 H 1.08001 * 119.99528 * 179.72721 * 8 7 6 35 35 H 1.09005 * 109.46849 * 66.21027 * 11 10 2 36 36 H 1.08995 * 109.46984 * 186.21035 * 11 10 2 37 37 H 1.08999 * 109.47139 * 306.21480 * 11 10 2 38 38 H 1.09001 * 109.47139 * 184.58871 * 14 12 10 39 39 H 1.08998 * 109.47227 * 304.58243 * 14 12 10 40 40 H 1.08996 * 109.47297 * 64.58101 * 14 12 10 41 41 H 1.09003 * 109.47565 * 174.99668 * 15 12 10 42 42 H 1.09001 * 109.47500 * 294.99873 * 15 12 10 43 43 H 0.97001 * 119.99755 * 0.02562 * 16 15 12 44 44 H 1.09008 * 109.46618 * 299.99901 * 19 17 16 45 45 H 1.08993 * 109.47353 * 59.99773 * 19 17 16 46 46 H 0.97001 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1869 -0.0144 -2.4167 6 7 2.6221 -0.6386 -3.4968 7 6 2.9192 -1.9251 -3.4420 8 6 2.7647 -2.6208 -2.2562 9 7 2.3246 -1.9978 -1.1771 10 7 2.0197 -0.6925 1.1993 11 6 1.4031 -0.1419 2.4138 12 6 3.4853 -0.6334 1.2799 13 1 3.9144 -0.9453 0.3277 14 6 3.9216 0.7997 1.5910 15 6 3.9732 -1.5672 2.3893 16 7 3.4550 -2.9172 2.1543 17 6 3.7578 -3.9137 3.0098 18 8 4.4589 -3.6926 3.9745 19 6 3.2252 -5.3025 2.7678 20 16 3.8022 -6.4072 4.0803 21 6 3.0531 -7.9154 3.5621 22 1 2.4503 -7.9391 2.6664 23 6 3.2378 -9.0731 4.3053 24 7 3.9721 -9.0442 5.3973 25 14 2.4430 -10.6721 3.7563 26 1 2.9377 -11.0317 2.4031 27 1 2.7908 -11.7522 4.7142 28 1 0.9681 -10.5033 3.7155 29 1 -0.3634 -1.0216 0.1114 30 1 -0.3633 0.6073 0.8291 31 1 -0.3634 0.4144 -0.9404 32 1 1.9472 1.0377 -2.4607 33 1 3.2789 -2.4343 -4.3239 34 1 3.0034 -3.6732 -2.2126 35 1 0.3350 -0.3595 2.4096 36 1 1.8629 -0.5950 3.2920 37 1 1.5539 0.9372 2.4406 38 1 5.0097 0.8608 1.5703 39 1 3.5055 1.4763 0.8445 40 1 3.5604 1.0830 2.5796 41 1 5.0629 -1.5915 2.3908 42 1 3.6166 -1.2038 3.3531 43 1 2.8946 -3.0940 1.3826 44 1 2.1354 -5.2785 2.7665 45 1 3.5818 -5.6655 1.8040 46 1 4.1008 -9.8532 5.9168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725159982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:27 Heat of formation + Delta-G solvation = -3.047792 kcal Electronic energy + Delta-G solvation = -27147.219243 eV Core-core repulsion = 23390.648828 eV Total energy + Delta-G solvation = -3756.570415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14030 -40.70002 -39.52379 -35.99993 -35.00987 -34.56893 -33.86872 -32.14963 -30.84056 -29.82077 -27.72864 -27.52383 -26.81802 -25.64610 -24.88194 -22.48658 -21.57957 -20.61833 -19.73558 -18.59529 -17.90167 -17.68636 -17.47528 -17.34885 -16.89779 -16.86153 -16.30984 -16.00550 -15.70367 -15.29557 -15.19898 -14.72759 -14.54948 -14.39433 -14.14516 -13.95065 -13.81996 -13.47978 -13.21189 -13.14968 -13.07664 -12.85821 -12.74741 -12.68349 -12.57634 -12.45171 -12.38875 -12.21844 -11.85723 -11.74057 -11.65642 -11.11402 -10.90102 -10.26033 -10.13895 -9.98536 -9.89758 -9.18812 -8.64480 -8.32739 -6.10704 -0.13403 0.25298 1.28939 1.44924 1.48228 1.58782 1.68651 2.28681 2.38549 2.74601 2.83785 3.00950 3.10866 3.36144 3.42819 3.65401 3.73224 3.82211 3.96419 4.11380 4.20092 4.24112 4.28365 4.32225 4.36392 4.47368 4.49418 4.53598 4.57923 4.62798 4.67315 4.72045 4.77991 4.82092 4.95942 5.03264 5.13479 5.23372 5.32810 5.43034 5.47355 5.55552 6.07157 6.10572 6.21414 6.43856 6.65788 6.93067 7.08101 7.34376 8.76330 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002716 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.614970 B =10305.732052 C =11439.847023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.136 3.864 3 H 0.085 0.915 4 C 0.080 3.920 5 C 0.048 3.952 6 N -0.460 5.460 7 C 0.040 3.960 8 C 0.042 3.958 9 N -0.430 5.430 10 N -0.526 5.526 11 C 0.019 3.981 12 C 0.085 3.915 13 H 0.077 0.923 14 C -0.180 4.180 15 C 0.132 3.868 16 N -0.697 5.697 17 C 0.530 3.470 18 O -0.572 6.572 19 C -0.125 4.125 20 S -0.148 6.148 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.912 5.912 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.262 1.262 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.188 0.812 33 H 0.191 0.809 34 H 0.184 0.816 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.419 0.581 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 23.957 -18.889 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.026 3.974 3 H 0.102 0.898 4 C -0.062 4.062 5 C -0.112 4.112 6 N -0.174 5.174 7 C -0.119 4.119 8 C -0.117 4.117 9 N -0.145 5.145 10 N -0.250 5.250 11 C -0.129 4.129 12 C -0.024 4.024 13 H 0.095 0.905 14 C -0.239 4.239 15 C 0.008 3.992 16 N -0.350 5.350 17 C 0.316 3.684 18 O -0.452 6.452 19 C -0.277 4.277 20 S 0.079 5.921 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.205 0.795 33 H 0.208 0.792 34 H 0.201 0.799 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.257 0.743 44 H 0.121 0.879 45 H 0.123 0.877 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.061 23.763 -17.218 29.964 hybrid contribution -0.861 -0.757 -1.291 1.727 sum -6.921 23.005 -18.509 30.327 Atomic orbital electron populations 1.21864 0.91722 1.02696 1.03376 1.20587 0.96459 0.94894 0.85438 0.89756 1.22376 0.96124 0.91222 0.96431 1.23858 0.96279 1.02517 0.88564 1.68502 1.08463 1.10461 1.30004 1.24162 0.96670 0.90918 1.00163 1.24250 0.95454 1.02775 0.89269 1.68351 1.07008 1.09290 1.29884 1.61994 1.04735 1.56006 1.02255 1.22487 1.00515 0.98304 0.91548 1.21737 0.88435 0.94444 0.97789 0.90465 1.22365 1.02768 0.95776 1.03010 1.21409 0.97856 0.81356 0.98609 1.45642 1.52889 1.07978 1.28527 1.20046 0.79738 0.86352 0.82292 1.90669 1.39448 1.84035 1.31017 1.23320 1.04794 0.95192 1.04359 1.85512 1.68585 1.04006 1.33963 1.23180 1.36890 0.95174 1.14309 0.90062 1.26128 0.95521 1.03017 0.94420 1.70179 1.38239 1.30301 1.16083 0.85010 0.78773 0.75835 0.78406 1.18582 1.20317 1.18695 0.92998 0.90171 0.90813 0.79465 0.79221 0.79856 0.90465 0.92581 0.93318 0.91539 0.90517 0.91348 0.92459 0.92241 0.74285 0.87872 0.87725 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.46 71.98 0.61 -0.78 16 2 C 0.14 1.56 2.19 44.17 0.10 1.65 16 3 H 0.08 0.64 6.37 -2.39 -0.02 0.63 16 4 C 0.08 1.15 4.77 42.55 0.20 1.35 16 5 C 0.05 0.62 10.90 84.69 0.92 1.55 16 6 N -0.46 -7.32 10.50 -195.22 -2.05 -9.37 16 7 C 0.04 0.53 11.23 84.67 0.95 1.48 16 8 C 0.04 0.63 11.22 84.67 0.95 1.58 16 9 N -0.43 -7.64 9.05 -183.29 -1.66 -9.30 16 10 N -0.53 -8.12 3.66 -876.20 -3.21 -11.33 16 11 C 0.02 0.27 7.78 127.69 0.99 1.26 16 12 C 0.09 1.44 2.18 44.91 0.10 1.54 16 13 H 0.08 1.46 6.40 -2.39 -0.02 1.44 16 14 C -0.18 -2.21 8.39 71.98 0.60 -1.61 16 15 C 0.13 3.24 4.87 86.38 0.42 3.66 16 16 N -0.70 -20.37 5.39 -463.06 -2.49 -22.87 16 17 C 0.53 21.14 7.85 87.66 0.69 21.83 16 18 O -0.57 -27.83 15.86 -3.04 -0.05 -27.87 16 19 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 20 S -0.15 -8.47 20.57 -56.49 -1.16 -9.64 16 21 C -0.55 -32.05 9.50 67.95 0.65 -31.40 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.80 5.49 84.86 0.47 1.27 16 24 N -0.91 -56.85 13.22 21.65 0.29 -56.56 16 25 Si 1.00 44.21 29.55 68.60 2.03 46.24 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.61 6.85 -2.39 -0.02 0.60 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 33 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.08 1.04 6.74 -2.38 -0.02 1.02 16 36 H 0.06 1.04 6.18 -2.39 -0.01 1.02 16 37 H 0.05 0.50 6.94 -2.39 -0.02 0.49 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.69 6.45 -2.39 -0.02 0.67 16 40 H 0.07 0.83 6.84 -2.39 -0.02 0.81 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.56 6.59 -2.39 -0.02 1.54 16 43 H 0.42 11.00 8.14 -92.71 -0.75 10.25 16 44 H 0.10 4.07 8.14 -2.39 -0.02 4.05 16 45 H 0.10 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -79.87 386.73 0.02 -79.85 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.24 Total: 22.36 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 8.09 Total: -1.51 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -9.13 Total: -109.43 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -1.16 Total: -9.64 kcal Total: -79.87 0.02 -79.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725159982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.806 kcal (2) G-P(sol) polarization free energy of solvation -79.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds