Wall clock time and date at job start Tue Mar 31 2020 21:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47689 * 2 1 4 4 C 1.53008 * 109.47381 * 239.99926 * 2 1 3 5 5 N 1.46505 * 109.46823 * 294.75898 * 4 2 1 6 6 C 1.34778 * 119.99712 * 174.87548 * 5 4 2 7 7 O 1.21283 * 119.99742 * 0.27326 * 6 5 4 8 8 C 1.50694 * 119.99762 * 180.27931 * 6 5 4 9 9 S 1.80998 * 109.46938 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00306 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99389 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00299 * 180.02562 * 10 9 8 13 13 N 1.31630 * 120.00245 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 120.00012 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47263 * 59.99340 * 14 12 10 16 16 H 1.48493 * 109.47003 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46656 * 299.99481 * 14 12 10 18 18 N 1.46901 * 109.47008 * 120.00021 * 2 1 3 19 19 C 1.46906 * 111.00066 * 177.04221 * 18 2 1 20 20 C 1.46903 * 110.99794 * 300.99655 * 18 2 1 21 21 H 1.08994 * 109.47333 * 44.56824 * 20 18 2 22 22 C 1.53000 * 109.47018 * 284.56868 * 20 18 2 23 23 C 1.50703 * 109.46815 * 164.57244 * 20 18 2 24 24 C 1.38393 * 119.99732 * 203.37400 * 23 20 18 25 25 N 1.32121 * 119.99938 * 179.97438 * 24 23 20 26 26 C 1.32161 * 119.99701 * 359.97438 * 25 24 23 27 27 C 1.38342 * 120.00452 * 0.02562 * 26 25 24 28 28 N 1.32124 * 120.00434 * 23.09517 * 23 20 18 29 29 H 1.08997 * 109.47686 * 300.00116 * 1 2 3 30 30 H 1.09000 * 109.47128 * 60.00337 * 1 2 3 31 31 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46916 * 174.76038 * 4 2 1 33 33 H 1.08997 * 109.46700 * 54.75780 * 4 2 1 34 34 H 0.97002 * 119.99834 * 355.15493 * 5 4 2 35 35 H 1.09001 * 109.46874 * 299.99597 * 8 6 5 36 36 H 1.08991 * 109.47612 * 59.99935 * 8 6 5 37 37 H 0.96997 * 120.00393 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.46788 * 56.45943 * 19 18 2 39 39 H 1.08995 * 109.46907 * 176.45663 * 19 18 2 40 40 H 1.08999 * 109.47302 * 296.46082 * 19 18 2 41 41 H 1.09003 * 109.47293 * 60.00199 * 22 20 18 42 42 H 1.08998 * 109.47293 * 180.02562 * 22 20 18 43 43 H 1.09003 * 109.47616 * 300.00029 * 22 20 18 44 44 H 1.08000 * 119.99785 * 359.97438 * 24 23 20 45 45 H 1.08000 * 119.99399 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.00044 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 1.6574 -2.1342 -1.1878 6 6 1.9106 -2.9469 -2.2327 7 8 2.4596 -2.5097 -3.2219 8 6 1.5114 -4.3987 -2.1720 9 16 1.9834 -5.2192 -3.7147 10 6 1.4163 -6.8532 -3.3782 11 1 0.9422 -7.0764 -2.4339 12 6 1.5799 -7.8536 -4.3263 13 7 2.1583 -7.5817 -5.4770 14 14 0.9781 -9.5858 -3.9697 15 1 -0.4862 -9.5603 -3.7240 16 1 1.2691 -10.4603 -5.1340 17 1 1.6726 -10.1134 -2.7679 18 7 2.0196 -0.6925 1.1994 19 6 3.4864 -0.7737 1.1986 20 6 1.5291 -0.0402 2.4210 21 1 0.4699 0.1909 2.3092 22 6 2.3112 1.2533 2.6575 23 6 1.7205 -0.9648 3.5955 24 6 0.9376 -0.8171 4.7271 25 7 1.1050 -1.6280 5.7567 26 6 2.0197 -2.5805 5.7057 27 6 2.8024 -2.7282 4.5746 28 7 2.6319 -1.9200 3.5429 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1260 -0.6407 -1.2974 33 1 1.6021 -0.2645 -2.1367 34 1 1.2183 -2.4837 -0.3967 35 1 2.0177 -4.8801 -1.3353 36 1 0.4326 -4.4736 -2.0355 37 1 2.2723 -8.2807 -6.1397 38 1 3.9057 0.2291 1.1166 39 1 3.8253 -1.2345 2.1264 40 1 3.8165 -1.3759 0.3521 41 1 2.1728 1.9221 1.8079 42 1 1.9476 1.7371 3.5641 43 1 3.3706 1.0223 2.7693 44 1 0.1898 -0.0390 4.7685 45 1 2.1562 -3.2436 6.5472 46 1 3.5496 -3.5068 4.5328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725159984.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:34 Heat of formation + Delta-G solvation = 30.558961 kcal Electronic energy + Delta-G solvation = -26872.649297 eV Core-core repulsion = 23117.536180 eV Total energy + Delta-G solvation = -3755.113117 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57466 -39.65236 -38.43679 -35.23654 -34.21488 -32.66816 -32.37911 -31.20283 -29.93822 -29.22455 -26.64483 -25.72399 -25.35090 -24.85940 -24.75058 -21.95358 -20.38211 -19.53473 -18.00879 -17.81315 -17.33590 -16.75703 -16.46100 -15.92695 -15.64601 -15.30489 -15.07794 -14.76455 -14.66562 -14.57870 -14.15419 -13.85691 -13.70996 -13.23515 -13.08814 -12.87041 -12.76448 -12.52234 -12.49142 -12.24605 -12.01139 -11.90374 -11.63853 -11.53486 -11.32767 -11.10974 -11.00446 -10.99435 -10.90274 -10.72108 -9.76907 -9.61390 -9.29767 -9.27516 -9.01566 -8.68706 -8.53450 -8.16991 -6.43603 -6.16785 -3.86527 0.41165 0.81308 3.12891 3.23639 3.26701 3.29044 3.30975 3.36746 3.49941 3.62617 3.89696 3.92779 4.19948 4.25561 4.31167 4.46429 4.67893 4.72613 4.75387 4.89749 4.94097 5.01070 5.07201 5.12218 5.18058 5.23077 5.29480 5.38020 5.49255 5.53837 5.62131 5.66702 5.67424 5.72263 5.88148 5.93595 5.99434 6.01671 6.23180 6.24724 6.68313 6.76607 6.89282 6.99122 7.46096 7.64071 7.94521 8.40018 8.78040 9.28352 10.90621 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012808 B = 0.002572 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.579269 B =10882.574968 C =12436.797936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 H 0.056 0.944 4 C 0.131 3.869 5 N -0.724 5.724 6 C 0.530 3.470 7 O -0.525 6.525 8 C -0.151 4.151 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.516 5.516 19 C 0.011 3.989 20 C 0.126 3.874 21 H 0.108 0.892 22 C -0.181 4.181 23 C 0.098 3.902 24 C 0.050 3.950 25 N -0.436 5.436 26 C 0.039 3.961 27 C 0.054 3.946 28 N -0.412 5.412 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.405 0.595 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.020 0.980 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 18.505 23.140 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.043 4.043 3 H 0.074 0.926 4 C 0.006 3.994 5 N -0.379 5.379 6 C 0.316 3.684 7 O -0.400 6.400 8 C -0.302 4.302 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.200 1.200 18 N -0.240 5.240 19 C -0.137 4.137 20 C 0.016 3.984 21 H 0.126 0.874 22 C -0.241 4.241 23 C -0.043 4.043 24 C -0.110 4.110 25 N -0.151 5.151 26 C -0.120 4.120 27 C -0.106 4.106 28 N -0.127 5.127 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.240 0.760 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.039 0.961 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.183 0.817 45 H 0.185 0.815 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.822 18.675 21.299 28.338 hybrid contribution -0.859 -1.057 1.843 2.292 sum -1.681 17.617 23.142 29.133 Atomic orbital electron populations 1.21944 0.93806 1.03168 1.01806 1.22000 0.96195 0.96084 0.90033 0.92573 1.21265 0.99842 0.82134 0.96169 1.45842 1.63480 1.09078 1.19523 1.20270 0.78128 0.87667 0.82334 1.90689 1.41228 1.76452 1.31657 1.23499 1.04391 0.94696 1.07578 1.85355 1.78681 1.05709 1.13713 1.22838 1.45375 0.94827 1.05235 0.91050 1.24982 0.94919 0.99205 0.94473 1.70010 1.40449 1.33885 1.06052 0.86238 0.79200 0.82221 0.77924 1.19970 1.20844 1.19959 1.62068 1.11449 1.50705 0.99784 1.22782 0.86002 0.99695 1.05226 1.20649 1.00809 0.89821 0.87101 0.87436 1.22437 1.01705 0.97248 1.02662 1.22161 0.92463 0.94239 0.95481 1.23461 0.99168 0.98569 0.89833 1.68454 1.16174 1.02854 1.27571 1.23764 0.92648 0.96286 0.99351 1.23930 0.98920 0.97928 0.89806 1.68367 1.15939 1.02077 1.26351 0.92448 0.91616 0.91352 0.91907 0.91042 0.75954 0.89373 0.89481 0.92190 0.96102 0.88265 0.91068 0.91347 0.91781 0.91541 0.81733 0.81500 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.86 37.16 0.33 -0.78 16 2 C 0.07 0.54 2.18 -67.71 -0.15 0.39 16 3 H 0.06 0.41 6.90 -51.93 -0.36 0.05 16 4 C 0.13 1.54 4.65 -4.03 -0.02 1.52 16 5 N -0.72 -10.17 5.08 -60.29 -0.31 -10.47 16 6 C 0.53 10.23 7.85 -10.99 -0.09 10.15 16 7 O -0.53 -12.21 15.86 5.55 0.09 -12.12 16 8 C -0.15 -3.17 6.16 36.00 0.22 -2.95 16 9 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 10 C -0.53 -15.53 9.50 30.94 0.29 -15.23 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 13 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 14 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 N -0.52 -4.41 3.76 -228.29 -0.86 -5.27 16 19 C 0.01 0.10 7.69 60.07 0.46 0.56 16 20 C 0.13 0.86 2.41 -68.86 -0.17 0.69 16 21 H 0.11 0.60 5.58 -51.93 -0.29 0.31 16 22 C -0.18 -1.03 8.32 37.16 0.31 -0.72 16 23 C 0.10 0.79 5.84 -82.41 -0.48 0.31 16 24 C 0.05 0.38 10.91 -17.37 -0.19 0.19 16 25 N -0.44 -3.83 10.50 -13.06 -0.14 -3.96 16 26 C 0.04 0.28 11.22 -17.37 -0.19 0.08 16 27 C 0.05 0.40 11.22 -17.37 -0.20 0.21 16 28 N -0.41 -3.81 7.16 -9.29 -0.07 -3.88 16 29 H 0.06 0.32 6.08 -51.93 -0.32 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.59 7.30 -51.93 -0.38 0.21 16 32 H 0.06 0.80 6.75 -51.93 -0.35 0.45 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.40 5.10 7.42 -40.82 -0.30 4.80 16 35 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 36 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 37 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.02 0.18 6.69 -51.93 -0.35 -0.17 16 39 H 0.10 1.00 5.33 -51.93 -0.28 0.72 16 40 H 0.07 0.81 6.58 -51.93 -0.34 0.47 16 41 H 0.07 0.36 6.94 -51.93 -0.36 0.00 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.45 6.48 -51.93 -0.34 0.12 16 44 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -36.06 382.37 -8.56 -44.63 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.59 Total: 1.91 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.63 Total: -49.42 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.09 Total: -12.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.06 -8.56 -44.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725159984.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.187 kcal (2) G-P(sol) polarization free energy of solvation -36.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds