Wall clock time and date at job start Tue Mar 31 2020 21:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47240 * 2 1 4 4 C 1.50706 * 109.46912 * 240.00622 * 2 1 3 5 5 O 1.21274 * 119.99688 * 239.99643 * 4 2 1 6 6 N 1.34775 * 119.99887 * 59.99911 * 4 2 1 7 7 C 1.46506 * 119.99693 * 180.02562 * 6 4 2 8 8 H 1.08996 * 112.84606 * 336.18925 * 7 6 4 9 9 C 1.53775 * 113.61531 * 107.50126 * 7 6 4 10 10 C 1.53775 * 87.08097 * 89.11408 * 9 7 6 11 11 H 1.08998 * 113.69240 * 270.86624 * 10 9 7 12 12 C 1.53002 * 113.61376 * 139.98137 * 10 9 7 13 13 N 1.46504 * 109.47477 * 87.49789 * 12 10 9 14 14 C 1.36932 * 120.00450 * 179.97438 * 13 12 10 15 15 H 1.08003 * 119.99843 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00354 * 180.02562 * 14 13 12 17 17 N 1.31625 * 119.99860 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00158 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47449 * 60.00439 * 18 16 14 20 20 H 1.48504 * 109.47234 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47446 * 300.00299 * 18 16 14 22 22 C 1.53777 * 87.08356 * 25.43295 * 10 9 7 23 23 C 1.50698 * 109.47435 * 120.00259 * 2 1 3 24 24 C 1.38232 * 119.98282 * 59.72451 * 23 2 1 25 25 C 1.38185 * 120.04527 * 179.76587 * 24 23 2 26 26 C 1.38498 * 120.02557 * 0.50820 * 25 24 23 27 27 F 1.35100 * 120.01174 * 179.76553 * 26 25 24 28 28 C 1.38392 * 119.97573 * 359.74471 * 26 25 24 29 29 C 1.38439 * 119.94827 * 0.02562 * 28 26 25 30 30 F 1.35107 * 120.01272 * 180.02562 * 29 28 26 31 31 H 1.09002 * 109.46952 * 299.99627 * 1 2 3 32 32 H 1.09003 * 109.47662 * 59.99416 * 1 2 3 33 33 H 1.09002 * 109.46992 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00190 * 359.97438 * 6 4 2 35 35 H 1.09003 * 113.61160 * 203.66277 * 9 7 6 36 36 H 1.09002 * 113.61807 * 334.56510 * 9 7 6 37 37 H 1.09003 * 109.47196 * 207.50308 * 12 10 9 38 38 H 1.09006 * 109.47259 * 327.50254 * 12 10 9 39 39 H 0.97003 * 119.99646 * 0.02562 * 13 12 10 40 40 H 0.96997 * 119.99920 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.61538 * 220.02028 * 22 10 9 42 42 H 1.08996 * 113.69047 * 89.12574 * 22 10 9 43 43 H 1.07997 * 119.97959 * 0.02562 * 24 23 2 44 44 H 1.07999 * 119.98894 * 180.25359 * 25 24 23 45 45 H 1.07998 * 120.02409 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7295 -1.6963 -1.1194 6 7 1.7066 -0.2497 -2.4546 7 6 2.1945 -0.9406 -3.6509 8 1 3.0996 -1.5190 -3.4660 9 6 1.1025 -1.7239 -4.3983 10 6 0.8291 -0.4340 -5.1896 11 1 0.0928 0.2193 -4.7215 12 6 0.5516 -0.6735 -6.6751 13 7 -0.8778 -0.9286 -6.8700 14 6 -1.3650 -1.1712 -8.1265 15 1 -0.6954 -1.1749 -8.9739 16 6 -2.7194 -1.4124 -8.3113 17 7 -3.5356 -1.4074 -7.2786 18 14 -3.3838 -1.7440 -10.0253 19 1 -2.7249 -2.9505 -10.5868 20 1 -4.8500 -1.9687 -9.9530 21 1 -3.1050 -0.5759 -10.8989 22 6 2.2841 -0.0359 -4.8912 23 6 2.0324 -0.7104 1.2304 24 6 1.6936 -2.0322 1.4516 25 6 2.1575 -2.6863 2.5770 26 6 2.9539 -2.0151 3.4898 27 9 3.4034 -2.6535 4.5923 28 6 3.2894 -0.6902 3.2719 29 6 2.8280 -0.0373 2.1418 30 9 3.1551 1.2559 1.9275 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.1486 0.5387 -2.5435 35 1 1.4906 -2.5379 -5.0106 36 1 0.2719 -2.0302 -3.7623 37 1 0.8447 0.2075 -7.2461 38 1 1.1244 -1.5354 -7.0174 39 1 -1.4793 -0.9250 -6.1090 40 1 -4.4821 -1.5756 -7.4078 41 1 2.4077 1.0206 -4.6530 42 1 2.9963 -0.3876 -5.6376 43 1 1.0693 -2.5553 0.7424 44 1 1.8956 -3.7202 2.7468 45 1 3.9107 -0.1662 3.9831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725372757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:29 Heat of formation + Delta-G solvation = -95.377613 kcal Electronic energy + Delta-G solvation = -28364.149321 eV Core-core repulsion = 24017.442047 eV Total energy + Delta-G solvation = -4346.707274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.10565 -50.04458 -41.56708 -40.24381 -39.09763 -36.32387 -35.31106 -34.21837 -32.71832 -31.83981 -30.12505 -28.46624 -26.60427 -26.00194 -25.16927 -24.24986 -23.54158 -22.77340 -21.21886 -20.29620 -19.32322 -19.04966 -18.61967 -17.82335 -17.36018 -17.01124 -16.75695 -16.74480 -16.38897 -16.35569 -16.11347 -15.75427 -15.58746 -15.46580 -15.10380 -15.00618 -14.82930 -14.41470 -13.88728 -13.85534 -13.70721 -13.40968 -13.30213 -13.10828 -13.00513 -12.88511 -12.78723 -12.65482 -12.27381 -12.23185 -12.17740 -11.91152 -11.71367 -11.33002 -11.12429 -10.86195 -10.82024 -10.09023 -10.01607 -9.68556 -8.96254 -7.94004 -5.21848 -0.14825 -0.00918 1.47699 1.50463 1.56415 1.56609 2.03322 2.41559 2.57057 2.79558 3.25713 3.38767 3.39711 3.50085 3.61585 3.62731 3.75701 3.90641 3.95679 3.98361 4.06061 4.12090 4.26422 4.35797 4.58637 4.64886 4.75124 4.78977 4.83511 4.84696 4.87311 4.89344 4.93148 4.94829 5.00815 5.03025 5.17999 5.19713 5.26354 5.29830 5.38795 5.50321 5.70144 5.70808 6.29011 6.53147 7.20917 7.35082 8.13330 8.35828 9.29280 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022579 B = 0.001935 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.785855 B =14469.585109 C =14830.369418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.066 4.066 3 H 0.125 0.875 4 C 0.521 3.479 5 O -0.570 6.570 6 N -0.698 5.698 7 C 0.127 3.873 8 H 0.093 0.907 9 C -0.141 4.141 10 C -0.110 4.110 11 H 0.088 0.912 12 C 0.159 3.841 13 N -0.744 5.744 14 C -0.246 4.246 15 H 0.074 0.926 16 C -0.077 4.077 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.277 1.277 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.036 4.036 25 C -0.161 4.161 26 C 0.119 3.881 27 F -0.136 7.136 28 C -0.193 4.193 29 C 0.126 3.874 30 F -0.132 7.132 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.414 0.586 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.018 0.982 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.144 0.856 44 H 0.159 0.841 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.782 4.630 22.696 26.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.087 4.087 3 H 0.143 0.857 4 C 0.308 3.692 5 O -0.448 6.448 6 N -0.349 5.349 7 C 0.021 3.979 8 H 0.111 0.889 9 C -0.179 4.179 10 C -0.129 4.129 11 H 0.106 0.894 12 C 0.033 3.967 13 N -0.387 5.387 14 C -0.378 4.378 15 H 0.091 0.909 16 C -0.269 4.269 17 N -0.620 5.620 18 Si 0.801 3.199 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.204 1.204 22 C -0.157 4.157 23 C -0.117 4.117 24 C -0.054 4.054 25 C -0.179 4.179 26 C 0.100 3.900 27 F -0.115 7.115 28 C -0.212 4.212 29 C 0.106 3.894 30 F -0.110 7.110 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.036 0.964 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.161 0.839 44 H 0.177 0.823 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.340 3.946 22.613 27.066 hybrid contribution -0.909 0.051 -0.636 1.111 sum 13.431 3.997 21.977 26.065 Atomic orbital electron populations 1.21859 0.89676 1.03646 1.04671 1.20225 0.99377 1.00745 0.88368 0.85697 1.20764 0.79314 0.84071 0.85075 1.90705 1.39301 1.27721 1.87118 1.45592 1.53025 1.31870 1.04376 1.21739 0.97011 0.94850 0.84250 0.88893 1.23394 0.98773 0.97284 0.98497 1.22676 0.97816 0.97864 0.94510 0.89351 1.20836 0.84375 0.96821 0.94707 1.42557 1.04408 1.85713 1.05974 1.19615 0.92081 1.38869 0.87253 0.90854 1.25558 0.96649 1.03737 1.00984 1.69801 1.03366 1.58218 1.30572 0.85226 0.76665 0.78207 0.79755 1.20554 1.22129 1.20357 1.23232 0.95692 1.00724 0.96082 1.19562 1.00320 0.95590 0.96229 1.20806 0.96750 0.92440 0.95448 1.21410 0.99616 1.02435 0.94461 1.17405 0.97328 0.90524 0.84780 1.91523 1.87456 1.81621 1.50867 1.21107 1.05758 0.94623 0.99757 1.17120 0.97847 0.79138 0.95273 1.91506 1.90925 1.33941 1.94642 0.89628 0.90050 0.91957 0.74878 0.89956 0.92645 0.96198 0.96375 0.79456 0.94032 0.89047 0.87853 0.83859 0.82288 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.90 71.98 0.64 -1.09 16 2 C -0.07 -1.03 2.88 -12.29 -0.04 -1.07 16 3 H 0.13 1.60 7.12 -2.39 -0.02 1.58 16 4 C 0.52 11.09 7.03 87.66 0.62 11.70 16 5 O -0.57 -16.44 14.73 -3.01 -0.04 -16.48 16 6 N -0.70 -13.18 5.16 -440.04 -2.27 -15.45 16 7 C 0.13 2.83 4.32 45.51 0.20 3.03 16 8 H 0.09 2.27 7.46 -2.39 -0.02 2.26 16 9 C -0.14 -3.89 7.43 31.12 0.23 -3.66 16 10 C -0.11 -3.10 3.63 -10.27 -0.04 -3.14 16 11 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 12 C 0.16 6.05 6.10 86.38 0.53 6.58 16 13 N -0.74 -37.25 5.60 -343.43 -1.92 -39.17 16 14 C -0.25 -13.73 9.99 84.03 0.84 -12.89 16 15 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 16 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 17 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 18 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C -0.12 -2.44 7.39 31.12 0.23 -2.21 16 23 C -0.12 -2.06 4.40 -19.82 -0.09 -2.15 16 24 C -0.04 -0.64 7.93 22.26 0.18 -0.46 16 25 C -0.16 -2.59 10.03 22.32 0.22 -2.36 16 26 C 0.12 2.03 7.30 22.37 0.16 2.19 16 27 F -0.14 -2.43 17.27 44.97 0.78 -1.66 16 28 C -0.19 -3.13 10.01 22.35 0.22 -2.91 16 29 C 0.13 2.22 7.24 22.37 0.16 2.38 16 30 F -0.13 -2.34 16.19 44.97 0.73 -1.61 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.85 7.56 -2.39 -0.02 0.84 16 33 H 0.06 0.85 7.37 -2.39 -0.02 0.83 16 34 H 0.41 5.89 8.12 -92.71 -0.75 5.13 16 35 H 0.08 2.40 7.90 -2.39 -0.02 2.38 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.02 0.71 7.84 -2.38 -0.02 0.69 16 39 H 0.37 19.81 7.67 -92.71 -0.71 19.09 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 2.00 8.10 -2.39 -0.02 1.98 16 43 H 0.14 2.44 7.51 -2.91 -0.02 2.42 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -69.63 382.58 3.69 -65.94 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: -0.43 Total: 29.03 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 4.54 Total: -9.99 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -3.91 Total: -113.20 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.04 Total: -16.48 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 1.50 Total: -3.26 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -69.63 3.69 -65.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725372757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.433 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds